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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (59758 bp)
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PERCEVAL Exon Candidates (23 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1261       1376   0    Initial    116    86        Good
acagagttgagaaatttgactggcattcaagctgtccaatcaatagctgccgctgaaggg
tggggctggatggcgtaagctacagctgaaggaagaacgtgagcacgaggcactgaggtg
attggctgaaggcacttccgttgagcatctagacgtttccttggctcttctggcgccaaa
ATGTCGTTCGTGGCAGGGGTTATTCGGCGGCTGGACGAGACAGTGGTGAACCGCATCGCG
GCGGGGGAAGTTATCCAGCGGCCAGCTAATGCTATCAAAGAGATGATTGAGAACTG
gtacggagggagtcgagccgggctcacttaagggctacgacttaacgggccgcgtcactc
aatggcgcggacacgcctctttgcccgggcagaggcatgtacagcgcatgcccacaacgg
cggaggccgccgggttccctgacgtgccagtcaggccttctccttttccgcagaccgtgt

Exon  2 +       4332       4422   2   Internal     91    97   Excellent
cctctctctcacacaatatgtaaactcatacagtgtatgagcctgtaagacaaaggaaaa
acacgttaatgaggcactattgtttgtatttggagtttgttatcattgcttggctcatat
taaaatatgtacattagagtagttgcagactgataaattattttctgtttgatttgccag
TTTAGATGCAAAATCCACAAGTATTCAAGTGATTGTTAAAGAGGGAGGCCTGAAGTTGAT
TCAGATCCAAGACAATGGCACCGGGATCAGG
gtaagtaaaacctcaaagtagcaggatgtttgtgcgcttcatggaagagtcaggaccttt
ctctgttctggaaactaggcttttgcagatgggattttttcactgaaaaattcaacacca
acaataaatatttattgagtacctattatttgctgggcactgttcaggggatgtgtcagt

Exon  3 +       8668       8766   0   Internal     99    91   Excellent
agcctgggtgacagagcaagactctgtctcaaaaaaaaaaaaaacaaaaaccaagaaaag
aaaaaaaaactcttctaagaggatttttttttcctggattaaatcaagaaaatgggaatt
caaagagatttggaaaaatgagtaacatgattatttactcatctttttggtatctaacag
AAAGAAGATCTGGATATTGTATGTGAAAGGTTCACTACTAGTAAACTGCAGTCCTTTGAG
GATTTAGCCAGTATTTCTACCTATGGCTTTCGAGGTGAG
gtaagctaaagattcaagaaatgtgtaaaatatcctcctgtgatgacattgtctgtcatt
tgttagtatgtatttctcaacatagataaataaggtttggtaccttttacttgttaaatg
tatgcaaatctgagcaaacttaatgaactttaactttcaaagactgagaattgttcataa

Exon  4 +      12114      12175   0   Internal     62    60    Marginal
ctacagattgatcatttctttttcaacatgtcatcaaagcaagtgagcaaagtgctcatc
gttgccacatattaatacaaaatggaagcagcagttcagataacctttccctttggtgag
gtgacagtgggtgacccagcagtgagtttttctttcagtctattttcttttcttccttag
GCTTTGGCCAGCATAAGCCATGTGGCTCATGTTACTATTACAACGAAAACAGCTGATGGA
AA
gtgtgcatacaggtatagtgctgacttcttttactcatatatattcattctgaaatgtat
tttttgcctaggtctcagagtaatcctgtctcaacaccagtgttatcttttttggcagag
atcttgagtacgttttcttttctccttattgataaattgataatcctcaaggatgattat

Exon  5 +      14704      14776   2   Internal     73   100   Excellent
aaaaatccaattcaaatgattatggaagtagtggagaaataaacaggaaaatgataaata
attaagataatatataatatggctatattttaatctattgttgatatgattttctctttt
ccccttgggattagtatctatctctctactggatattaatttgttatattttctcattag
AGCAAGTTACTCAGATGGAAAACTGAAAGCCCCTCCTAAACCATGTGCTGGCAATCAAGG
GACCCAGATCACG
gtaagaatggtacatgggagagtaaattgttgaagctttgtttgtataaatattggaata
aaaaataaaattgcttctaagttttcagggtaataataaaatgaatttgcactagttaat
ggaggtcccaagatatcctctaagcaagataaatgactattggcttttgtggcatggcag

Exon  6 +      22145      22257   2   Internal    113    95   Excellent
acagacaaatggatggatgaatggacaggcacaggaggacctcaaatggaccaagtcttc
ggggccctcatttcacaaagttagtttatgggaaggaaccttgtgtttttaaattctgat
tcttttgtaatgtttgagttttgagtattttcaaaagcttcagaatctcttttctaatag
AGAACTGATAGAAATTGGATGTGAGGATAAAACCCTAGCCTTCAAAATGAATGGTTACAT
ATCCAATGCAAACTACTCAGTGAAGAAGTGCATCTTCTTACTCTTCATCAACC
gtaagttaaaaagaaccacatgggaaatccactcacaggaaacacccacagggaatttta
tgggaccatggaaaaatttctgatccataggtttgattaaacatggagaaacctcatggc
aaagtttggttttattgggaagcatgtataatttttgtcctaagtctgtgctcagccctc

Exon  7 +      24350      24541   0   Terminal    192    48    Marginal
gtagcccaggggcgggggtagggggtcacaccagtccttctgtcctcatgttggcagaga
tatctactctgaagcctttgtaggggcctgggcacctttgggagcctgagctggaactga
aggtggagctgcagcctgggccttggtttgatccttggccttggcctttggccggcacag
CCTGAGCCCCTTGGCAATACGGGCACGAGCACGCTTCCCAAGCTTGGGATGGGCAATGTA
GGCAAGTCGATCGAGCTTGCGGCTGACACCCTTTGGGATCTTGGGCTTAACCTCCTTGGG
CTTTACGAGGGCCTTGATAGCCTCGGCACGTGCACTCATGGCCTTGGCATTGTTGGCCTG
CATCTTCTTTAG
gcccttcttgttgtgcttcttggcaaagtgcatgttcctcaggaacttggggtccacccc
cttaagagattcgtatctttgtgatcggggtttcttgataccatttctgtgccattttcg
ggactggttgtgtgtggtgtggttcttggacttcgccatgtctacaccttaagccgcggc

Exon  8 +      27291      27338   1   Internal     48    78        Good
agcaccttatactggcaaagctttacattgcaaacctccattatcacagagcaagcaatg
aaagatggactcagagctgaggcgataaattgatagctagcatagcctctaaactgactt
ttatgactacattttatggatagaaagtgttcttatatatattgtttctttacataatag
GGGACTTATTCATGGCTGCAGATGAGAAAACAGATCCTAAGAAGTTAA
gtgacttgcccaaggtcacacaaagaattccactagttctaaaatgacagtaattacagt
taacatacattgtatgtggcagatacatataaagcacatggcattaatttttttttttga
gatggagtcttgctctgtcgccaagctggagtgcagtggcacgatctcggcttactgcaa

Exon  9 +      28028      28218   1   Terminal    191   100   Excellent
ctacacagctcttaagtagcagtgccaatatttgaacacactcagactcgatcctgaggt
tttgaccactgtgtcatctggcctcaaatcttctggccaccacatacaccatatgtgggc
tttttctccccctcccactatctaaggtaattgttctctcttattttcctgacagtttag
AAATCAGTCCCCAGAATGTGGATGTTAATGTGCACCCCACAAAGCATGAAGTTCACTTCC
TGCACGAGGAGAGCATCCTGGAGCGGGTGCAGCAGCACATCGAGAGCAAGCTCCTGGGCT
CCAATTCCTCCAGGATGTACTTCACCCAGGTCAGGGCGCTTCTCATCCAGCTACTTCTCT
GGGGCCTTTGA
aatgtgcccggccagacgtgagagcccagatttttgcctgttatttaggaactttctttg
caagtattacctggatagttttaacattttcttctttgaacctagttataaaggtattgt
gctgttgttcctaggcttagagtcataaggcctgagctcacttcctcactttgcctccat

Exon 10 +      28929      29077   0    Initial    149    76        Good
cttacctgagttctcagttttcctatctataagataagcaggttggataaaatgttctcc
aatatactcctggtcctgagatgatgtgattgtgggcagccctttaatcatggtgaagat
gttcatcataagcacactgaaactacaaaataggaatataaatattttctccattaaatt
ATGCTGGATCCTAGAAGCAAAAACTGGAACTGTGAAACCCTACTTCACAGAAAACTTAAA
ATTCCCAAGCAGATGAATGCTTCTCGGAAGGACACTGACAGTTACCTACCTGGAAAGAAT
CTAGATGGAGGTGGCATGGGCACTAAGCG
gtgagattaaacccagttagggcagccccaccagccttggaacccacacatctggagatt
gttgatgcagagagaaaggttcctactggtgagacctgaaagggatatgtggcaggtggg
aggaagaagttctgtctggaaaccaacccttgttcctccgttattgattgactcctggta

Exon 11 +      30217      30246   0    Initial     30    44    Marginal
atctgttagggcaagtggcggtgatggagttgaggctgcagaattcaggccaaatagaga
ggttttcatcaggatattaaagagtttagatttcaatttggtgggaatggatgggatctt
atttgcattttatgaagagctccctggttgcaatatcagaatggattggagaggagcaag
ATGGAAGCCTACAGTGATTTGGGAGAAGTG
gtgagggacttgagacacaggaagtagccccattcactaatagttgagtatgtagatttg
ctaggacctggaaatggtttggctggtggggagtgggaagaaaggcccaaagtgtgaaat
gaagatggagagcacattgcctagcccagagtgattgccatttgctctgtcccagttgag

Exon 12 +      33350      33720   0   Internal    371    87        Good
ttatacttcaaatttcgggcagaattgcttctataacaatgataattatacctcatacta
gcttctttcttagtactgctccatttggggacctgtatatctatacttcttattctgagt
ctctccactatatatatatatatatatatatatttttttttttttttttttttaatacag
ACTTTGCTACCAGGACTTGCTGGCCCCTCTGGGGAGATGGTTAAATCCACAACAAGTCTG
ACCTCGTCTTCTACTTCTGGAAGTAGTGATAAGGTCTATGCCCACCAGATGGTTCGTACA
GATTCCCGGGAACAGAAGCTTGATGCATTTCTGCAGCCTCTGAGCAAACCCCTGTCCAGT
CAGCCCCAGGCCATTGTCACAGAGGATAAGACAGATATTTCTAGTGGCAGGGCTAGGCAG
CAAGATGAGGAGATGCTTGAACTCCCAGCCCCTGCTGAAGTGGCTGCCAAAAATCAGAGC
TTGGAGGGGGATACAACAAAGGGGACTTCAGAAATGTCAGAGAAGAGAGGACCTACTTCC
AGCAACCCCAG
gtatggccttttgggaaaagtacagcctacctcctttattctgtaataaaactgccttct
aactttggcttttcatgaatcacttgcatcttctctctgcctgacttgccctctggaatg
gtgctggaatggtcctgtggccttgtccactgtctgcctttgaccataacttgaaagtca

Exon 13 +      36497      36602   2   Internal    106   100   Excellent
aagcagtctaccagagaacagactgatcttgttggccttctgccagcacaggggttcatt
cacagctctgtagaaccagcacagagaagttgcttgctcctccaaaatgcaacccacaaa
atttggctaagtttaaaaacaagaataataatgatctgcacttccttttcttcattgcag
AAAGAGACATCGGGAAGATTCTGATGTGGAAATGGTGGAAGATGATTCCCGAAAGGAAAT
GACTGCAGCTTGTACCCCCCGGAGAAGGATCATTAACCTCACTAGT
gttttgagtctccaggaagaaattaatgagcagggacatgagggtacgtaaacgctgtgg
cctgcctgggatgcatagggcctcaactgccaaggttttggaaatggagaaagcagtcat
gttgtcagagtggccactacagttttgctgggcaagctcctcttcctttactaacccaca

Exon 14 +      40611      40736   0   Terminal    126    77        Good
gagatctcctgagagggatggaagggtgtcttgatcatctctggtagcagcaaaggcact
ggcatacagtggccactggaagacaaccagcaggggatgggggcgtttacccttgcaagt
gagcattaggaactagaggactgattgccctttcttcagctttggtttcccttgctgcag
AAAAAGATGCTGAGACTCATGGCCTCGGTTATGAACTCAGATATGTGGTTTGGCTTTGAA
GCACAGATGGATTTTGTCCGATTTTGGCAGGGAAATGCCTACAGACAGCACTATGGGCAT
ATTTAG
gttagggacgaaatgcaagttgattaagtcctgataagaggctgtgaagaggtccaagaa
gcctcacaatgcccaatgaagaaaagccctgtgcttggtgctgccgcctcccttccccgt
cctgctggcagggctgcgcttcagtagctctggatgcgtcagagcagtccatgaacattc

Exon 15 +      44171      44371   0     Single    201    40        Poor
aagctacagaagaaaacttggaagccagcagagattgatgaggtttaagggaagaagcca
caagtgctgatgtagaagctgtagcaagttatccaaaagatctaattgatgaaggtggct
tacactaaacaacagattttcaatgtagacaaaacaatcttctattagaaggtgtcatct
ATGACTTACATAGTTAAAGAGGAAAAGTCACTGCCTGGCTTCAAAGCTTCAAAAGACAGG
TTGACTCTAATAGGTACTAATGCATCTGGTGACTTTAAGTTGAAGCCAGTGCTCATTTGC
TATTCCAAAAATCCCAGGGCCCTTAAGAATTATGCTAACTCTACTCTGCCTGTGCTCTAT
AAATGGAACAACAAAGCCTAG
atgacagcatctttttagaacatgatttactgaatattttaagcccattgttgagaccta
ctgttcagaaaaaaagattcctttcaaaatattactgctcattaacaatgtacctggcca
ccctagatctgtaatggagatatataaggacatgaacactaacacagcatccattctgca

Exon 16 +      44783      44917   0     Single    135    45    Marginal
atttcatagggctctagctgccatagatagtgattcttctgatggatctgagccaagtaa
attgaaaacctctggaaagaattcatcattttagatgtcctgagaaacattcgagattcc
tgggaagaagtcaaaatatcaacattaacaggagtttggaagaaattgcatccagccctc
ATGGATAACTTTGAGGGGTTCAAGACTTCAGTGGAGGAAGTAGCTGCAGATGTGGTGGAA
ATCACAAGAAAATTAGAATTAGAAGTGGAGCCTGAGGATATGACTGAATTGCTGCAATCC
CATGATAAAATTTGA
acagatgaggagttgcttcttatggatgagcatagaaagtagtttcttgagaaagaactt
aattctggtgaagatgctgttaatattgttgaaatggcaacaaaggatttagaatattat
ataaacttggtaaagcagcagcagggtttgagtggattgacactagttttggaagaattt

Exon 17 +      47770      47839   2   Internal     70    54    Marginal
ttcctgaggtttctctaatgtcttttaataaagttgacctcagagatctcgttacctctc
tgagttcctgctttgtcttagattttgatccttgagtgttctttaatcttttagcaattc
cttgttgcatgttaaaagattagttatattttattcctcatttgtgttcgttttcaccag
GAGGCTCAATTCAGGCTTCTTTGCTTACTTGGTGTCTCTAGTTCTGGTGCCTGGTGCTTT
GGTCAATGAA
gtggggttggtaggattctattacttacctgttttttggttttattttttgttttgcagt
tctccgggagatgttgcataaccactccttcgtgggctgtgtgaatcctcagtgggcctt
ggcacagcatcaaaccaagttataccttctcaacaccaccaagcttaggtaaatcagctg

Exon 18 +      47899      48011   1   Terminal    113    80        Good
tgttaaaagattagttatattttattcctcatttgtgttcgttttcaccaggaggctcaa
ttcaggcttctttgcttacttggtgtctctagttctggtgcctggtgctttggtcaatga
agtggggttggtaggattctattacttacctgttttttggttttattttttgttttgcag
TTCTCCGGGAGATGTTGCATAACCACTCCTTCGTGGGCTGTGTGAATCCTCAGTGGGCCT
TGGCACAGCATCAAACCAAGTTATACCTTCTCAACACCACCAAGCTTAGGTAA
atcagctgagtgtgtgaacaagcagagctactacaacaatggtccagggagcacaggcac
aaaagctaaggagagcagcatgaggtagttgggagggcacaggctttggagtcagacaca
tgtggtttcaaatccaagttcgaccatttcccatttatttgactgtagacaagttacatt

Exon 19 +      55232      55396   0   Internal    165   100   Excellent
acaagaggaggaaaggggttttgttgtggattgttcaggcacttcctttggggtatatgg
gggatgagtgttacatttatggtttctcacctgccattctgatagtggattcttgggaat
tcaggcttcatttggatgctccgttaaagcttgctccttcatgttcttgcttcttcctag
GAGCCAGCACCGCTCTTTGACCTTGCCATGCTTGCCTTAGATAGTCCAGAGAGTGGCTGG
ACAGAGGAAGATGGTCCCAAAGAAGGACTTGCTGAATACATTGTTGAGTTTCTGAAGAAG
AAGGCTGAGATGCTTGCAGACTATTTCTCTTTGGAAATTGATGAG
gtgtgacagccattcttatacttctgttgtattcttcaaataaaatttccagccgggtgc
ggtggctcatggctgtaatcccagcactttgggaggctgaggtgggcagataacttgggg
tcaggagttcaaaaccagctggccaacatgatgaaaccccgtctctactaaaaaaataga

Exon 20 +      55878      55929   2   Terminal     52    48    Marginal
ctagcctaggcgacagcgagactgcgtctcaaaaaaaaaaaaaaagaacgttccaaggtc
aggactaggcctcccctcagaagcagcaagtgacatatgtgacatcctctccactcccta
tttgcatttctaggttatataactgtactactatccatgcatgcctactcttgttcccag
GGTGAAGGACCCAGACATGGAGAGCCGAATCCCTGCAGGCCATTATAAATGA
gattatgccatttgctcccatttcttcttattctttcatttttggggctctccatcttga
tgtgttctttggatcgtgaacagatccaaagaaaaggttgttctgccgtgctgtttgtca
ggatgaaaaactcttttttaagtgtttaggtctgcccccagtgcccagcccaatcaagta

Exon 21 +      56230      56322   0   Internal     93    93   Excellent
ggatgaaaaactcttttttaagtgtttaggtctgcccccagtgcccagcccaatcaagta
acgtggtcacccagagtggcagataggagcacaaggcctgggaaagcactggagaaatgg
gatttgtttaaactatgacagcattatttcttgttcccttgtcctttttcctgcaagcag
GAAGGGAACCTGATTGGATTACCCCTTCTGATTGACAACTATGTGCCCCCTTTGGAGGGA
CTGCCTATCTTCATTCTTCGACTAGCCACTGAG
gtcagtgatcaagcagatactaagcatttcggtacatgcatgtgtgctggagggaaaggg
caaatgaccaccctttgatctggaatgataaagatgataagggtgggatagctgaaggcc
tgctctcatccccactaatattcattcccagcaatattcagcagtcccatttacagtttt

Exon 22 +      56617      56730   0   Internal    114    91   Excellent
aaggcctgctctcatccccactaatattcattcccagcaatattcagcagtcccatttac
agttttaacgcctaaagtatcacatttcgttttttagctttaagtagtctgtgatctccg
tttagaatgagaatgtttaaattcgtacctattttgaggtattgaatttctttggaccag
GTGAATTGGGACGAAGAAAAGGAATGTTTTGAAAGCCTCAGTAAAGAATGCGCTATGTTC
TATTCCATCCGGAAGCAGTACATATCTGAGGAGTCGACCCTCTCAGGCCAGCAG
gtacagtggtgatgcacactggcaccccaggactaggacaggacctcatacaatctttag
gagatgaaacttgcccatctctaaaatttcgggatttctttgtacccaacaaggttcaaa
cacaacagtcagcttttattcatgatttttacttccatctgctgatgtagaacatacctc

Exon 23 +      57329      57410   0   Internal     82    62    Marginal
cagcttgacacaaaaagggtgcctggattcctaatgtttcattgtcacttttcccagtca
gatgataatgcttttcaaatcaacatatattttgggggaggttggaagggagagttgaaa
tattctaagaatcaaagagtagcccactttaatcagagtatgacccctgattgctcacag
TCATCTCCTGAGCAGTGTGAGCGAGTTTCAGATGAGGAGGCTGAAGGCCAGTCAGGCATG
CTCGAGGATTCCAAGTCTGTAG
gtgggagggcagagatttagtcctgttggccaaagcctctagggaatttctcactccagt
ggagaaggcaacacacttaccaaactgtgtggaaactatctcatttgattagaaatttta
cctcaagaagaggaaggacagttgagaaagaacattttcttacacatgagacagctaagg

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