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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (43816 bp)
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PERCEVAL Exon Candidates (16 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       2652       2710   2   Internal     59    91   Excellent
gctggcacagtgcctacaacacccccacccctcactgtgagtcagtgttgttatggttga
tactgcaggcacaagtgcaggattttctcacactggaaggcacacacacacagacacaca
cacacacacacacacacacacacacacacacacttctaagcttgccccgcctgcctctag
AGCACTTTTTGGAGTTGCTCATGTGGAAGCCCAGAAGGCTCTGGCTTCTCCAAGCTCAG
gtaggtaccttgcaattaccatgtttgtccagccctaatgacagcacagctctaggctgc
atttcctaaatgagtaagacctggtctcatccattttgctttgtaataagcttttctgca
aggacaagagtttgcttaaggtaatcatagctttttacttgaaaactgctgaaacacaga

Exon  2 +       6022       6225   1   Internal    204    99   Excellent
cccaaaactggggagaaggggagcttatttgctactccatcttagaagtgtgggtctcgc
taacaccagagaaggtggtttatgcacctgattatggggccagtccatcaattctacaaa
gaataccagtgcctggtttttacctccccctcaagtgtcttctgggtcttctcattttag
GCCTCAAGGCCCTCTACCGAACTCCAACCATCATTGCCTTGGTGGTCTTGCTTGTGAGTA
TTGTGGTACTTGTGAGTATCACTGTCATCCAGATCCACAAGCAAGAGGTCCTCCCTCCAG
GACTGAAGGTAAGTGTGAAGGGACTGGCAACAAAGGGAAGAAATGAGCATAAAGGGGAAG
AAATCAATTATTCCAAAACCATGA
gttagaagagcagaaaatcctttccccccatctctggctgaagccaggagaagttagtgt
aagacgcaagggagaaggtctggacatgctgggtttgtgatatttgaggctacaaattga
gggtagtgactgacaccttctccaaggactgtgtagtcttgctttgacttctgacttcaa

Exon  3 +       7167       7201   0    Initial     35    45    Marginal
gcaaaaaaaaaaaaaaaattactcaggaccttgtgcttagtcccagaggcccctcttagt
tctcaacaagtccatccccaaatgatctttaggctcagaatcataatatatccccaggct
tggctctgagggtgcccttggagacaggaggtgattccatgagaggctgacaagggaaag
ATGAAGCAAGTTGATGAGTCCTTCAATCATTTTGG
gtaggggtcagcaaacatttctcataaagggtcaaatagtatatattttaggctttgagg
tccatttatagtctctgttttataactcttctttgttttttgactcattaagaatgtaca
aacccttcttagctgtgccatagggaccaggtaattcagccatgttctttgaatctcatt

Exon  4 +       8958       9085   1   Internal    128    85        Good
gaaggtttgttgaattgaaggagaggagttaagcctagtaccacccttagaccctgatag
ctgggctgcctgccctgggccccacatttcagaaggaccagctctagttgcacttcaggc
ttatctctctctatgacccaaacgaatgtgtttacccagagcccatgtttccccttctag
AACACACTGTGGTGCCCAAGACTTCAGAATCTAGGGTCTTCGTGGACCTCCAGAAGGTGG
ACATCACCAATGGTCTGAGGGGTGGCCAAGAGGCAGCTGCTTACAGGGAGTGTAAACAGA
GCATAGCT
gtgtggtctgaactgtccacacacaggtgcatgggctctttattctgtgagaacaggttt
gggaaagggacagggcagaagcctctattcataaaattttgtctctaatcctacaaatgt
tagaaatgggctggttaaggcagttgccagctgatggcttctacttgttctggacagtaa

Exon  5 +      14361      14573   0   Terminal    213    55    Marginal
ttgaacccgggaggcagagtttgcagtgagctgagatcgtgccactgcaatccagcctgg
gtgataagagtgaactgcatctcaaaaaaaaaaaaaaaaagaaaaaaggaaatgcctcta
ccctgtgaaaaacttcttataacttcttcctatgcttttattttggttgtttatttttag
ACTGATAAGCCTAGAAGTTTGGAAATAGAGGGCATCCAGGTGACTATTCATTTTCCGTCT
GAGACGAAGATGGCTTTTGTACCTCTCCCCAGAGGTCTGAATGAGGAAGAATCAGGCAAC
TCAATTGTATGCAAGATCCATCATGAAGTACAATTCTCAACCTTGGCTGAGTGTTGGACT
CACCTGGGACTTTTAAAACCTGTTGATGCCTGA
gtccactctcagagattctgatttaattggtatggggtgtagacttggcattgggggatt
ttttaagctctccaggtgattctaatgcattgcaaagtgataattatttcctagaacctg
ccctacctttcctcattcccttccctcacaatccaaggagacaaaattggtttggagaaa

Exon  6 +      14893      15010   0   Internal    118   100   Excellent
cttccctcacaatccaaggagacaaaattggtttggagaaaataatttttcttattgatt
agcccttccctaagcgaagcagtgtggattaaggtactcagggttctcagtggcccactg
agaaagcagtcctcagaggagtcccgcccattctgactctccctttccctttttattcag
TATGGTATTGTGCTGGATGCCGGGTCTTCAAGAACCACAGTCTACGTGTATCAATGGCCA
GCAGAAAAAGAGAATAATACCGGAGTGGTCAGTCAAACCTTCAAATGTAGTGTGAAAG
gtaaggactgaagtgtgtctgggagtcacaatgggcagcaaggtagagttctaagtgttt
tggaggcctggagaggtcctgagatgttgcttggaggcagggaatgagcattggactggg
agtcaggaaataggagatcgtgtgctagtgctgctactcatcagtggaataaacttgctc

Exon  7 +      17104      17259   0    Initial    156    59    Marginal
cttcctcgttcgagcattaggatcttcagttggcctgtagcctcccaaccagggtgttct
gaatgtgcccagtgtatccttgagcccacaggacaacaggttagagactccagacctgtc
ctcccagcccgagcagcctcctttgtttccctccgtgagctgccaaaacattgtaagttc
ATGGGGATCATGGCATTGAAAAACTTGGAAAGCAGAGTTAGTCTTTCTCACCGGGAGACC
AAGAGTCTTCTTTGGCTAATCAGAGTGAATTCTGATCATCTGCCCTCCGAGGAGGGCAGC
CAGGAGCTTGCCTACCCTGATGCACAGGTGTTCCAG
gttaggctctccagaagcagatgtagagacagattatggagtgcaaggtggttattagag
atgcactattatagcagaaagtgggcagagagaagtactggacaaaaaaagagaagtcaa
acttcaactcaggcctgatgaagcttcagctgatccgttatgctgcactgggttgaaatg

Exon  8 +      20778      20944   1   Internal    167    75        Good
caatttgcccttgactagtgcttctcaacacaaggtgaatttgtctcccgggaaacattt
tgcaatgtctggagatcttttcgattgtcatgactgggtccgtggtgctactagcatcta
gtgtatagaagacatttctcatctttcttccagccacactggccccttggcttttcctag
AAAATGCTGAGCAGCTTCCACACTTGGCCTTTTCCCTTGCCATTCTACAATGTTCTAAGC
ATTGTACAATGCACAGAACAGCCTCCACAACAAAGAATTATCTACCCCAAAATGTCAGTA
GCACCAAGGTTAAGAAACCTTGGTTTACGATGGTTCTGGGGAAGGGG
gtgagaagtgcttagatttgcgaggtattttgaaggtaggaccaacatgattttatgatg
gacttgatgtgaggcatctgagttcataatgcatgagcaagagtttggatatgagcaact
gtgtgcatcacaacaccatttactgagattggggaacactgggagtggagcatattgggg

Exon  9 +      25811      25961   1   Internal    151    62    Marginal
cttttagaggttgcaagtatactgatcagtgtgaccatacgggacttaccacatccagct
gttttcgaccccctaccaaaccccaataattttcaaagccaatttgttttttatttaaaa
gttgtatcactgcgattggttcctggaaatgctgacagatgctgactgcttgcttttcag
GCTCTGGAATCTCCAGCTATGGAAATAACCCCCAAGATGTCCCCAGAGCCTTTGAGGAGT
GTATGCAAAAAGTCAAGGGGCAGGTTCCATCCCACCTCCACGGATCCACCCCCATTCACC
TGGGAGCCACGGCTGGGATGCGCTTGCTGAG
gtaaaggctaagtggcacaaaggagcccatttgaccaaaataaccaagaatatgttgaat
cttgccaagaatgtaactctatttctgggaacaaccctcgccccccaaaaagaagcccac
attctgccataaatttgggctttaaaggttgggaaacttttagtttttattttaataccc

Exon 10 +      26545      26728   2   Terminal    184    65    Marginal
tgaaatctgctttaaaacaatggcatgtctgcacctcaaatcagtcaaagcttttggagt
tgttatgaaacaagcatctaatttcactcactcaaattagttccttctaaatttgtagtc
atggcttttagcccagttgcattgtttttgaatgtcttttctcttttttctccattatag
CATTTCCTTGACCTTGAAATTTCAAAAAAAAATTCCAAAAAGAAACACCAAACTTAAATC
TACTCAGAGTAAAGGCTACTACTCCAAGTGTTGGAATAAGGTTTTATCACAAGAAAACAA
CACTCATTCTGCTTCAGAGCCACTTTATCTACGATTCCAAGCACGCAAAATTATCTATGT
CTGA
gcattaataaaaaaagaacaaacagagctcctttaacatgataatgaaaagaaatcatga
tgtgctctccattagactgggccttttccttatagtctcataattcttgtttctaatctg
atttcctggttgaccacattgaatgtggaaggaagtcagatttctctgctcactcttgga

Exon 11 +      28680      28839   2   Internal    160    91   Excellent
agttgccccagaaggcttcaacttgcaaaagggattgtggtgtacagcacacatctggaa
aatcattcatccccaccagcagggagacggtgaagtttgcattttcacctgagtgagact
atgtattttaagactgtattgtctgggcactcagacttgtttgttctgtgccttgtacag
GTTGCAAAATGAAACAGCAGCTAATGAAGTCCTTGAAAGCATCCAAAGCTACTTCAAGTC
CCAGCCCTTTGACTTTAGGGGTGCTCAAATCATTTCTGGGCAAGAAGAAGGGGTATATGG
ATGGATTACAGCCAACTATTTAATGGGAAATTTCCTGGAG
gtgtgtgcaaacaaatgcatggtttttaatcttactgtttatcctatcccctgtgagtga
tagcctaagtagaggtacatgccatcagggatatctgccctgtatcactcctaccatgta
acgcattagggaaatacctatgagacaatagctaagaaagacatatatagctggggagaa

Exon 12 +      29839      30087   0   Internal    249   100   Excellent
ctgcccagttcctgtaagcattttaattcaccacctctaaaagaaaaggaaagaattggc
ctcacatgctccctctgtcctacttcttagtaataggagacgaggcttgggtggagaact
ctgggcaaacagagatggtgcctttggctttctttctcacttccttttcccactgtgcag
AAGAACCTGTGGCACATGTGGGTGCACCCGCATGGAGTGGAAACCACGGGTGCCCTGGAC
TTAGGTGGTGCCTCCACCCAAATATCCTTCGTGGCAGGAGAGAAGATGGATCTGAACACC
AGCGACATCATGCAGGTGTCCCTGTATGGCTACGTATACACGCTCTACACACACAGCTTC
CAGTGCTATGGCCGGAATGAGGCTGAGAAGAAGTTTCTGGCAATGCTCCTGCAGGTACTT
GAGTCGGGG
gtagggggtggcaggtgttctcttgagggtttgagctgaggggagaatgccctgccttct
ggggtctgtcctctccacttcaattgaaaggtagatggaaataacagcattttccaattt
actcctgggggtccaagtccctttcctctctgtctctttcttcccctccgtctccctctc

Exon 13 +      36849      37121   0   Internal    273    98   Excellent
ctacaaaggacatgaactcatcatgttttatggcttcatagtattccatggtgtatatgt
gccatattttcttaatccagtctatcactattggacatttgggttgattccaagtctttg
ctattgtgaatagtgccgcaataaacatacgtgtctaacaccttactcttatacctacag
AATTCTCCTACCAAAAACCATCTCACCAATCCCTGTTACCCTCGGGATTATAGCATCAGC
TTCACCATGGGCCATGTATTTGATAGCCTGTGCACTGTGGACCAGAGGCCAGAAAGTTAT
AACCCCAATGATGTCATCACTTTTGAAGGAACTGGGGACCCATCTCTGTGTAAGGAGAAG
GTGGCTTCCATATTTGACTTCAAAGCTTGCCATGATCAAGAAACCTGTTCTTTTGATGGG
GTTTATCAGCCAAAGATTAAAGGGCCATTTGTG
gtaagagcaaaaccttctgaaagattcctttccccattgaatattcatttctcacttttc
tgtttctcctctgctgacttgttagccaccttcttattcctcacccataaacctttctat
tataccccattctgagaactaattttcttctgtattacttatttccaggcttttgcagga

Exon 14 +      37290      37400   0   Internal    111    76        Good
gggccatttgtggtaagagcaaaaccttctgaaagattcctttccccattgaatattcat
ttctcacttttctgtttctcctctgctgacttgttagccaccttcttattcctcacccat
aaacctttctattataccccattctgagaactaattttcttctgtattacttatttccag
GCTTTTGCAGGATTCTACTACACAGCCAGTGCTTTAAATCTTTCAGGTAGCTTTTCCCTG
GACACCTTCAACTCCAGCACCTGGAATTTCTGCTCACAGAATTGGAGTCAG
gtcagtatttaaagagaagggatcaatgtcagtacaaaaaaatatggtagaatctattct
atgtgtgtgtattctgaatttagcctttatgctcttctatttccatcacatctgtaaaat
aaaaggaataagggaatctactcccacacctgtggtgtgaattaatgttataactacatg

Exon 15 +      37825      37962   0   Internal    138    99   Excellent
gtgatattatatagggatattttcataattatattgtgtgattatatgattgtattataa
agtattttctattatgaaattatgggtgataagattctttaaaacatgacttttaaccca
aggtgttcattttaaaacatacctgcctgccctgcctctcagatgttttaaacctttcag
CTCCCACTGCTGCTCCCCAAATTTGATGAGGTATATGCCCGCTCTTACTGCTTCTCAGCC
AACTACATCTACCACTTGTTTGTGAACGGTTACAAATTCACAGAGGAGACTTGGCCCCAA
ATACACTTTGAAAAAGAA
gtaagttaagcacaaatcattttctcttcttcttcccaacagagaggtttgtatgtgtgt
gtggaacaaatgtagaaggtaaaagggtattaatgagttaaactcactgggtggaagctg
atcagactgatcccttgtgagtttcccagaagaggtcatggagaatttagaagagttgct

Exon 16 +      40961      41133   1   Terminal    173   100   Excellent
ctatgaagattgcaaaggtgaaacatttatacacctaataaaacaccctaaaaacatgta
aagcaaaaatagatagaactaccagaataaattgacagtcagcttcccatttgggctgat
tttctattcttaggaactggtcctgggatcagtaaaccactcattagcctctttctctag
CCACAAACACTCCTGTGCTCCTGGACAACAGGAACACTTTCACTGTTATTAACTGTGCCG
TCTTCACTCTTGGCTGTGACAAGATTGTGAGAATTTGTTCTTTTGACTATTTCTTCTGCA
GCGCTGGAGGTGAGATTTCCCCAAGCCTTTGTGGCTACAGTGTGGTGTCTTAA
cttgggcaagtcctttgacctctttgggccacaatttcccatgggagctttgtgaggttg
atagcagtatgactccggtatgtgattgcagccttgagccttgccctgagcgctgagcca
tctcctctactccacaggtggggaatagcagcatagcctggtctcttggctacatgctca

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