GENSCAN 1.0	Date run: 16-Jan-104	Time: 06:04:25

Sequence TRIM42_1 : 25510 bp : 41.67% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   1492   1617  126  0  0   74   93   135 0.171  12.56
ccactggagaactgatagcagtattctggtagaggaggcatcaagagtcctgggaggccg
gtggtaatcatgtaggcaccatggaaactgctatgtgcgtttgctgtccatgttgtacat
ggcagagatgttgtcctcagttatgctcctgtctgtgctgcaagttcatcttcacctcag
AGCGGAACTGCACCTGCTTCCCCTGCCCTTACAAAGATGAGCGGAACTGCCAGTTCTGCC
ACTGCACCTGTTCTGAGAGCCCCAACTGCCATTGGTGTTGCTGCTCTTGGGCCAATGATC
CCAACT
gtaagtgctgctgcacagccagcagcaatctcaactgctactactatgagagccgctgct
gccgcaataccatcatcactttccacaagggccgcctcaggagcatccatacctcgtaag
tgccaggcaccagatgtggggccgcattgggtcatgaaaactagggaccacttgccagct

 1.02 Intr +   1623   1732  110  2  2  -27   99   135 0.610   1.26
tgtcctcagttatgctcctgtctgtgctgcaagttcatcttcacctcagagcggaactgc
acctgcttcccctgcccttacaaagatgagcggaactgccagttctgccactgcacctgt
tctgagagccccaactgccattggtgttgctgctcttgggccaatgatcccaactgtaag
TGCTGCTGCACAGCCAGCAGCAATCTCAACTGCTACTACTATGAGAGCCGCTGCTGCCGC
AATACCATCATCACTTTCCACAAGGGCCGCCTCAGGAGCATCCATACCTC
gtaagtgccaggcaccagatgtggggccgcattgggtcatgaaaactagggaccacttgc
cagctgtgaagtctacagggcaggccagtgagcctctgagttcatttctttatctaaaag
gaggagccaagaattttgtagcaattaattgtatcctaaatggtcactatgtatgtagac

 1.03 Term +   5624   6392  769  2  1  126   33  1008 0.909  90.98
gtcaccccgctgaaaaacggtggagacagattgagaacgcaggcaccttagcgcccagct
caggctcctcaccaccacactagactgcccctcaggaaccaagagttctttcagaggtag
agaagcagagcaagctcttgagcctgcctcctgaaaccctgcctttgcttctcctttcag
CTCCAAGACTGCCCTGCGCACTGGGAGCAGCGATACCCAGGTGGATGAAGTAAAGTCAAT
ACCAGCCAACAGTCACCTGGTGAACCACCTCAATTGCCCCATGTGCAGCCGGCTGCGCCT
GCACTCATTCATGCTGCCCTGCAACCACAGCCTGTGCGAGAAGTGCCTGCGGCAGCTGCA
GAAGCACGCCGAGGTCACCGAGAACTTCTTCATCCTCATCTGCCCAGTGTGCGACCGCTC
GCACTGCATGCCCTACAGCAACAAGATGCAGCTGCCCGAGAACTACCTGCACGGGCGTCT
CACCAAGCGCTACATGCAGGAGCACGGCTACCTCAAGTGGCGCTTTGACCGCTCCTCCGG
GCCCATCCTCTGCCAGGTCTGCCGCAACAAGCGCATCGCTTACAAGCGCTGCATCACCTG
CCGCCTCAACCTGTGCAACGACTGCCTCAAGGCCTTCCACTCGGATGTGGCCATGCAAGA
CCACGTCTTTGTGGACACCAGCGCCGAGGAACAGGACGAGAAGATCTGCATCCACCACCC
ATCCAGCCGCATCATCGAGTACTGCCGCAATGACAACAAATTGCTCTGCACCTTCTGCAA
GTTCTCTTTCCACAATGGCCACGACACCATTAGCCTCATCGACGCCTGCTCCGAGAGGGC
CGCCTCACTCTTCAGCGCCATCGCCAAGTTCAAAGCAGGTCCTCCCCTTTTCCACTCCTT
CAGCCTAACTTCTAGTTCAGGAACACATGGGGAAGATGGCGTGGGGTAA
tctgttaagtgagtgccttaacagattccacctagtggagcaatcaaggcaccaggaaac
actgtgctaccctgcaagtcactatcctggtgtccgctcctggcaaccaccaccagccac
ttaacttccccgtgccttgcttttctcacctatgaaacgggaatagtagtgaccccctca

 2.01 Init +   9390   9474   85  2  1   45   28    93 0.397   0.03
tgtggcttcctctgtcttttttctcctcctggagatgcctttttcctctcatctaagaaa
tttttatcctgcttctcaggactttgctctacataagcctaatcaatccctaatacagca
agaaatttcctatccaagtatctttaacagtaggtaactattgaatagtcaaagaaaata
ATGCGCAAAGTAGAATTCTGGCTGCCACAGTCACAGTGCATTGGGGAAGGCAAGAAGCAC
TTCTCAGCACTGAAATCGGACCCTG
gtagtttccctttcagtctcacctgcatcacctcatcttttctgagccagtgtgaggaag
gaggtggcaagaaaacactggggcttcagggagttagccagagagtgacactgctggcat
tcaccaatgagttgttagaagacaggaaagaatggcttttactcaacaaatacatttgct

 2.02 Intr +  10884  11704  821  1  2   54  116   799 0.781  69.51
taaggaggaccaaattcatttcataaacctattccagcctgtttcagcccaactacaagt
gccttccctccctcttcattcacctccttggagcctagggtaatttgttctagtttgcta
ctgactttgacacctggggagatgaaaattttaaaagtaactaacttggcatttttgcag
TCCGATATGAAATTGATAATGACCTAATGGAATTCAACATCTTAAAAAACAGCTTTAAAG
CTGACAAGGAGGCAAAGCGAAAAGAGATCAGAAATGGCTTTCTCAAGTTGCGCAGCATTC
TTCAGGAGAAAGAGAAGATCATCATGGAGCAGATAGAGAATCTAGAAGTGTCCAGGCAGA
AGGAAATTGAAAAATATGTGTATGTTACAACCATGAAAGTGAACGAGATGGATGGTCTGA
TCGCCTACTCCAAGGAAGCCCTGAAGGAGACTGGCCAGGTGGCATTCCTGCAGTCAGCCA
AGATCCTGGTGGACCAGATCGAGGACGGCATCCAGACCACCTACAGGCCTGACCCACAGC
TCCGGCTGCACTCAATAAACTACGTGCCCTTGGACTTTGTTGAGCTTTCCAGTGCCATCC
ATGAGCTCTTCCCCACAGGGCCCAAGAAGGTACGCTCCTCAGGGGACTCCCTGCCCTCCC
CCTACCCCGTGCACTCAGAAACAATGATTGCCAGGAAGGTCACTTTCAGCACCCACAGCC
TCGGCAACCAGCACATATACCAGCGAAGCTCCTCCATGTTGTCCTTCAGCAACACTGACA
AGAAGGCCAAGGTGGGTCTGGAGGCCTGTGGGAGAGCCCAGTCAGCCACCCCCGCCAAAC
CCACAGACGGCCTCTACACCTACTGGAGTGCTGGAGCAGACAGCCAGTCTGTACAGAACA
GCAGCAGCTTCCACAACTGGTACTCATTCAACGATGGCTCTGTGAAGACCCCAGGCCCAA
TTGTTATCTACCAGACTCTGGTGTACCCAAGAGCTGCCAAG
gtaagaaaggttctgggcccagtggggaagtgggagggtgtggggcacagagtagaagtg
agtagtcaggaaaggttgcacttacctctttgacctctaggatctggtcactcatatctg
ctcctctagactctttgtggtcatcccattcaaaagggataagctcctggaatcttaagt

 2.03 Intr +  14130  14354  225  2  0   87   67   231 0.967  18.16
aggcctcatcacacagtcttccaagacttgtgcatggtctaattaaaagtcttcggtagc
tacaggggatggggtcagcttaaactcaccccacagatagtcaacatcacaaatctttaa
gggaaagaaagctgaatgatgtatactagtaccacaccagtatgttcatttcttccatag
GTTTACTGGACATGTCCAGCAGAAGACGTGGACTCTTTTGAGATGGAATTCTATGAAGTC
ATTACTTCTCCTCCTAACAACGTACAAATGGAGCTCTGTGGACAAATTCGGGACATAATG
CAGCAAAATCTGGAGCTGCACAACCTGACCCCCAACACAGAATACGTGTTTAAAGTTAGA
GCCATCAATGATAATGGTCCTGGGCAATGGAGTGATATCTGCAAG
gtattgtgtgcgttatttctcagacagatttttttttctatggtaggttctggatgaggc
cctgttaagatgatcgtgagattatagaactcactatgggactcttcctctaagcacaga
acatttgttaacttgaggccaaagagagggctgctggcctcaaccagactttgcagatgt

 2.04 Intr +  15406  15564  159  0  0   47   55   105 0.483   2.36
tatgcatctgatctgatacccaagggaactggagagtcatcagtttctctccctctccct
ctttctcttctcttcctctctccctgcttccttctctctctcactctctcattctctttg
cttctctctggatctgcaccatttttggctagcccttagtttctgctcccttaaattcag
CTTGTATATGGTTTTGAATTGTCATGGCCCAACCCCTGTGTGACCTTAAAGCTCCAATGC
CCAACAGCATCTGACCAACCATACTCTGTTTCCTTAGTAAAATGTTCGAGGAAAAGAATC
CGAGTGGTTGCTACCTCTAGTAATAAAGGCAAAGCAGGA
gtaagggtggtcagtataccaatagcaaatctcctagggtgggaccactcatcctggttg
ccagccccagggggacatgctttacctcatagagtccagcacccatggacacacacacac
atacacatacacacacacacacacacacacacacacacacagagagagatagagagagag

 2.05 Term +  24050  24136   87  1  0  103   52   122 0.305   6.78
ggaaaccttcctggtccttctgagcctcagcttcttcatctataaagtggcaccaacagc
cactgtggtggtcgtgaggagttaatgaaatgatgtgtgtagtgtctgacatgcagaagg
gcccaggctactgggagctgttgtctattgggtgtcatgactcttcgcttctgattgcag
GTGGTAACACCAGATGGACATGGGAAGAACCGAGCTAAGTGGGGCCTGCTGAAGAATATC
CAGTCTGCCCTCCAGAAGCACTTCTGA
gccccttcagagcaggaaacaacctcagactcatcacaaagtagacatatacacacacat
atatgtatgtatatttttctcaccacattcttcaaggaggttgtagacaaatgtttccat
gacctctcagctttccaacaggaatcttgtaagagctaataaaaggaaatacctgacatg

Predicted peptide sequence(s):


>TRIM42_1|GENSCAN_predicted_peptide_1|334_aa
SGTAPASPALTKMSGTASSATAPVLRAPTAIGVAALGPMIPTCCCTASSNLNCYYYESRC
CRNTIITFHKGRLRSIHTSSKTALRTGSSDTQVDEVKSIPANSHLVNHLNCPMCSRLRLH
SFMLPCNHSLCEKCLRQLQKHAEVTENFFILICPVCDRSHCMPYSNKMQLPENYLHGRLT
KRYMQEHGYLKWRFDRSSGPILCQVCRNKRIAYKRCITCRLNLCNDCLKAFHSDVAMQDH
VFVDTSAEEQDEKICIHHPSSRIIEYCRNDNKLLCTFCKFSFHNGHDTISLIDACSERAA
SLFSAIAKFKAGPPLFHSFSLTSSSGTHGEDGVG

>TRIM42_1|GENSCAN_predicted_peptide_2|458_aa
MRKVEFWLPQSQCIGEGKKHFSALKSDPVRYEIDNDLMEFNILKNSFKADKEAKRKEIRN
GFLKLRSILQEKEKIIMEQIENLEVSRQKEIEKYVYVTTMKVNEMDGLIAYSKEALKETG
QVAFLQSAKILVDQIEDGIQTTYRPDPQLRLHSINYVPLDFVELSSAIHELFPTGPKKVR
SSGDSLPSPYPVHSETMIARKVTFSTHSLGNQHIYQRSSSMLSFSNTDKKAKVGLEACGR
AQSATPAKPTDGLYTYWSAGADSQSVQNSSSFHNWYSFNDGSVKTPGPIVIYQTLVYPRA
AKVYWTCPAEDVDSFEMEFYEVITSPPNNVQMELCGQIRDIMQQNLELHNLTPNTEYVFK
VRAINDNGPGQWSDICKLVYGFELSWPNPCVTLKLQCPTASDQPYSVSLVKCSRKRIRVV
ATSSNKGKAGVVTPDGHGKNRAKWGLLKNIQSALQKHF