GENSCAN 1.0 Date run: 16-Jan-104 Time: 07:15:03 Sequence PPARG_1 : 148823 bp : 38.80% C+G : Isochore 1 ( 0 - 43 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.01 Term + 311 587 277 2 1 32 39 257 0.332 9.15 ctgaatattttcccttgtgatacccatcctcgcaaaactttgcttcaaccacaaacgagg accttctgtaccagaggggcaataaccacaatgaagctaggaagaaatgcagagcacccc agcatacagtccataagcttcctgaagtggggggcctcaggcatcgctgcctccccaaag AGGATCAGGCCCAGAACAGTATGCTCCAGAAATAAGACTGGAAAAAGGGAAAGAGGGGCC TCAAGTCCAGGAGACCAGCGGCTTTCTGAACGCGCACCTGCCAACCCACTTTGGACAGGT CACGATGGACAGCGTGGCAGGAAAAGAAAAGGTCACTGTCTACCCAACACATGAGAAACT GTTTCTCGTGCCTCACGTCCCCACTCCGTCCCCACCCATGTTGTCTGAGTCCCTCGGTGT CAGAAACACTGCTAAGAAATTTAAGAAATTCTGTTAA tgagtttaagaaatgtttttaatgattaaaagtcagtgacttgtgaataaccatgtaact tacaaacgcaaggaactctgaaagtgtgcagcaccaccgatcagaagagaaaaccaaggg acccgaaatatgctttaattaaattttcttttaaaatgtcactggaaagaacatcttggg 2.06 PlyA - 610 605 6 -1.95 2.05 Term - 956 688 269 0 2 70 43 189 0.300 7.27 2.04 Intr - 2166 1423 744 1 0 114 31 273 0.143 14.69 2.03 Intr - 6991 6922 70 1 1 50 61 92 0.139 0.54 2.02 Intr - 16275 16155 121 2 1 89 80 87 0.057 7.58 2.01 Init - 56643 56510 134 0 2 61 33 160 0.058 7.46 2.00 Prom - 57005 56966 40 -4.55 3.01 Init + 64869 64997 129 2 0 50 64 86 0.050 2.60 gcccagtcctttctgtgtttattcccatctctcccaaatatttggaaactgatgtcttga ctcatgggtgtattcacaaattctgttacttcaagtctttttcttttaacggattgatct tttgctagatagagacaaaatatcagtgtgaattacagcaaacccctattccatgctgtt ATGGGTGAAACTCTGGGAGATTCTCCTATTGACCCAGAAAGCGATTCCTTCACTGATACA CTGTCTGCAAACATATCACAAGGTAAAGTTCCTTCCAGATACGGCTATTGGGGACGTGGG GGCATTTAT gtaagggtaaaattgctcttgtagtttgtcttccaggttgtgtttgttttaatactatca tgtgtacactccagtattttaatgcttagctcgttgctatcgcgttcatttaaaaacatg ttcagaaccttaaaaaaggaaacctaacctaatctattttatctctgtgcatggctccca 3.02 Intr + 83296 83368 73 0 1 128 78 43 0.028 5.36 tcactaattcatcctcaaactctctgacagagtaataaaaactcctctgaaagtggtcag acatatcgggcattctggtttctcaggtgatcccacctggccttcttcctcctgcatttt ctctaggctgctctgtatctgtagcctgggactaccttccacctctctcctgtctttcag ATCCTTTGTTTCCTGGTCCCATCTTTTCTCTTCTTGGTTCTGGTGGAGAACTCTGGGAAA GAGTACGTGGGAG gtaacttttctggatgccttatcattctgaaaatgtctttactctcatacttgatggacg atttggatgagtctaaaattctaggttggaaatttttttttctcttgaattttggcaaca ttgttctattgattttctagcttccagtgttactgttgagaagttcagtgtcattctgat 3.03 Intr + 92980 93207 228 2 0 92 16 205 0.529 10.62 ctttctatcataaaacagcctagacagcactaagaaggtggttatgttcttttctgttgt tgtgagcgcccagatgagattactttgccaaagactcttttcatttctctttctgaaact ctgtgagattgctgtgttctctaggacttaacttcacagctagtctatttttcctttcag AAATGACCATGGTTGACACAGAGATGCCATTCTGGCCCACCAACTTTGGGATCAGCTCCG TGGATCTCTCCGTAATGGAAGACCACTCCCACTCCTTTGATATCAAGCCCTTCACTACTG TTGACTTCTCCAGCATTTCTACTCCACATTACGAAGACATTCCATTCACAAGAACAGATC CAGTGGTTGCAGATTACAAGTATGACCTGAAACTTCAAGAGTACCAAA gtatgatgtttattttcacttttcagactactaggactagaattggactcatctctcagt aaccctgtaataaataatgctccagagactagaaatctaatagagaaggcattcaccatt catttattcacccatttatccatgaaatattaggtatctatgaaatgccaggaagggagc 3.04 Intr + 94598 94767 170 0 2 88 86 247 0.999 23.24 cctgtgattacaaacctttctttttcttgccttaactccagtgttttttcatgttccact gtgcttttacactgaaacaatacaaatacagcatgaaggtgtactatggtggcttgccct gttgcctttttaggactgttttcatgggataattatcctctcacatgtctccatacacag GTGCAATCAAAGTGGAGCCTGCATCTCCACCTTATTATTCTGAGAAGACTCAGCTCTACA ATAAGCCTCATGAAGAGCCTTCCAACTCCCTCATGGCAATTGAATGTCGTGTCTGTGGAG ATAAAGCTTCTGGATTTCACTATGGAGTTCATGCTTGTGAAGGATGCAAG gtaattaaaaaaaaagtcttcaaagaaattgttgaaactttattatttcatttcagcaga accccttttttaggtgatacaatatatgaattttttttcttcatggaagagtatcttgct ctgtcacccagaccagagtgcagtggtgctatcctagcacactgcagccttgagcttctg 3.05 Intr + 105890 106028 139 1 1 125 115 36 0.927 9.12 tttatagcagagaacatttagttccagagaggttaagtgacttgtctaaagtcaccagtg acagaatcgtgtcaagaacctgccttttctgattcccaggccagtatacctttcgctgta ggttgctgcttccatgtgtcataaagacttaaaatttgcttcttttttatccctttgcag GGTTTCTTCCGGAGAACAATCAGATTGAAGCTTATCTATGACAGATGTGATCTTAACTGT CGGATCCACAAAAAAAGTAGAAATAAATGTCAGTACTGTCGGTTTCAGAAATGCCTTGCA GTGGGGATGTCTCATAATG gtaagtaaacagtcatcaccatatactttattattctcattatagctgccagaccagtgg acactaaagccattgccaaaaatgtgtacagtttttccaccaaatgccagaatttagaat attgcatggcgataaaacatttctcttttaggtcagtgtttttaaagttttattatagaa 3.06 Term + 108161 108375 215 0 2 11 50 115 0.245 -3.59 agaaaataaacatcagactaacaacaaggttttgattagttttgcctgttagctgtatga agaaaacatttctaaatacaaagttttctaggaagttgagtcactatttaaaatccattg ctttgaccaatgtgaagccaacagggttttcattcatatagaatgcctttttatcaaaag AGGCTCTGAGTGTTATACCAAAATCAGCACCCAGCTGTTTTCAGTATGCGCAAGAAAACA TGAACGTCCCCCAAAGCAAATGTACTCCATTCCGTGTTAACCTTATTTCTGCTCCCTGGT CTCTGATTAGTCTGGTTGATGAATGTAGCTTCCCCTTTGGCCATGCACTCACAGCTTTGA AGGAGGCTTCTGAAGGAACTGGTAGGGAACCCTAG gggctcttgctaatgttgttggatagtcactgaaatcagtgatcaccatgtcctttcact ttgaaaattctatgattctgtataatcaaacaacctaactcactggatttttcacttttc aaccagctattccgtgtcttacagtgctctggtcttcacagataggtaggcacctggcat 4.01 Init + 111996 112122 127 2 1 87 55 100 0.573 6.97 tgaagagagagcaggaatcatcagcacccattgtaggttagagaggtcacactagggacc acagaatacaagctaagggagaggcaccatcagagagatctggagagcagctggcagaat gttagaggacccagaacagcaggaaccaggacaagaaattttggaaataagagggcggag ATGGTCACCAGAATTAAAGGCTGGGAGAATACTGAAGAGCTCAAGTCTATTGAGAACTTA GAAGAGGCCATTAGTTCTGGCCGAGAGAAAAGCATTCAGGATTTTTACAAAGTTTTGGTA AATCCCA gtgagcgcaaagctagactgcagtagatcgagaagtgaatagaaagtgacaaacacagac ggagtgaaaacaactctttcagtaagttcagtggtggaggaaagatagcttaaagaggag gtaatagtagagtcagaaccttcaacctgggcagaaaggccagagccagtacagagaggc 4.02 Intr + 119158 119357 200 2 2 94 13 186 0.059 9.85 atggtctgtgctacttttgtgaaataaaaacatgagcaaagtggtagacagaaaccagga ctcaagagcagtggaggaggagggcttctactgtgtgggaacgagggctgggagagcaca gtgtgtgttcagagcagtagtaatccaatgattcatcctgtcattcctcttcctctatag CCATCAGGTTTGGGCGGATGCCACAGGCCGAGAAGGAGAAGCTGTTGGCGGAGATCTCCA GTGATATCGACCAGCTGAATCCAGAGTCCGCTGACCTCCGGGCCCTGGCAAAACATTTGT ATGACTCATACATAAAGTCCTTCCCGCTGACCAAAGCAAAGGCGAGGGCGATCTTGACAG GAAAGACAACAGACAAATCA gttagttctcttctgctgtcttcattgggggaggcgggaagttgttttgggtttttgttt ctttgagtaaatggtttactgcgctacaaatgcacacacagaatattgttcaactgttgg ctgttaacatattgcaggctgagtctgaaacgcaggaagtgttttcagatagcacaagtc 4.03 Intr + 129980 130430 451 1 1 89 94 503 0.323 42.95 agaagataattaagatgaataaaagaacttgagagtattttctcattattaagcatcttc agctttaaagattttagttagcaaagcaagtttacataaacagttttctgaacctgggat ggcattcactgtgagttagaaatctccaagtcatccacgttttccctgttttatttgcag CCATTCGTTATCTATGACATGAATTCCTTAATGATGGGAGAAGATAAAATCAAGTTCAAA CACATCACCCCCCTGCAGGAGCAGAGCAAAGAGGTGGCCATCCGCATCTTTCAGGGCTGC CAGTTTCGCTCCGTGGAGGCTGTGCAGGAGATCACAGAGTATGCCAAAAGCATTCCTGGT TTTGTAAATCTTGACTTGAACGACCAAGTAACTCTCCTCAAATATGGAGTCCACGAGATC ATTTACACAATGCTGGCCTCCTTGATGAATAAAGATGGGGTTCTCATATCCGAGGGCCAA GGCTTCATGACAAGGGAGTTTCTAAAGAGCCTGCGAAAGCCTTTTGGTGACTTTATGGAG CCCAAGTTTGAGTTTGCTGTGAAGTTCAATGCACTGGAATTAGATGACAGCGACTTGGCA ATATTTATTGCTGTCATTATTCTCAGTGGAG gtaagatttgtcttttgatcttctatgaaagagggtgggatgatggtggggtggccaaaa gaattttggatttccttagtgttagtctgcattgtcactttaagtgccagtggcatgatg ccatgaatcatcactacacgtgcaaaacactgtaccaagaaagagtgtcataggtttgcg 4.04 Intr + 130738 130774 37 2 1 122 95 -11 0.494 -0.60 tcatcactacacgtgcaaaacactgtaccaagaaagagtgtcataggtttgcggtgtgaa ggttataagtaacccaggatcttctctttcatccctcaacaatatattttttccagtcaa atgccctcttctcctttttctttttcttttcttttctttgtctctttcttttccttccag AAAGGAAGATTAGAGGCCAGTCTAATCTTTGGTTCCT gtaagtaatggcatgtataactttgcttaagacaatgctcacttgatgtagagaagggac cactaagtatttctggtcaaatcatgctcctgccccaccatcagtaagatactactttga attgcttttgtgatatcaggaattaaggaatacctactgacctccacccactctcttgtg 4.05 Term + 136575 136710 136 0 1 96 37 163 0.590 8.51 cagaactccccacaaaaatggacagtcaactttaaataactaagtaaacacatctctgct taatcagataccatcttatactaggttctaatatagataagtggttgcagaaacatttat gagaggaatgttaaattgtcgaaataccatccagtcccttcatttcttcctgcccttcag AAACAAACAGAATAACCCTGATGCAGCTGTCACGGCAGAACACTCATTCCAGCTCACAGA ACACCAGTGTTCAATCAGCACTGAGTTTGAGGAGCACCGGGTTTGGGAGTATTCATCTCT CTTCCCTGTCCCATAG ctgcccttcaaactcttgagactgttcccagctctaaaatggaaagggtcgtcttctctc tggaacaaaagacaggatgtacttgcttgaataggccagtgctttcctggaggaaactcc ggcttatggagcctctgcttctgcacagcccagtgccttccaccccctcttcatctgcta 5.01 Init + 144213 144279 67 2 1 78 98 84 0.996 9.69 ttcaggatggaatcccaccacaggctgtattttgaagaaatggttgaagtcaataagaag agtgaagggaaggtgagaatgtttcaggcaggaagaataaaatctgaataagtgcagagt cctgacagaacatagggtgtttgaggaacttggtatggaaatagattaatatggcttaac ATGGAGCAAAATGAAACAGAACTGAGACTAGAGGATGACCAGGACCAGGTCATGAAGGAC ATTAAAG gtgggtaaaactcataccatgaaggagagaagagttacagtttttaaaagaaaataaata gccttcaggagctcaaatttgaaatcaatacgagatagatgatcaagtgaatgttctgtc ttcttgatgagcctgactgagaaaaccttataatctaacccaaggcaacaaactgagaaa 5.02 Term + 147174 147421 248 1 2 84 43 286 0.951 18.67 ccatccttagttcttacccattatctgcttacccttcctccccacctatttaagatacaa agcaaaacaaaccaaaaatacagatgagttgcttggtagagctgcctaggcctccaaggc ggggcccagaggattttttgactgaaccccctgttgtgttttccatatgtgcttccccag ACCGCCCAGGTTTGCTGAATGTGAAGCCCATTGAAGACATTCAAGACAACCTGCTACAAG CCCTGGAGCTCCAGCTGAAGCTGAACCACCCTGAGTCCTCACAGCTGTTTGCCAAGCTGC TCCAGAAAATGACAGACCTCAGACAGATTGTCACGGAACACGTGCAGCTACTGCAGGTGA TCAAGAAGACGGAGACAGACATGAGTCTTCACCCGCTCCTGCAGGAGATCTACAAGGACT TGTACTAG cagagagtcctgagccactgccaacatttcccttcttccagttgcactattctgagggaa aatctgacacctaagaaatttactgtgaaaaagcattttaaaaagaaaaggttttagaat atgatctattttatgcatattgtttataaagacacatttacaatttacttttaatattaa Predicted peptide sequence(s): >PPARG_1|GENSCAN_predicted_peptide_1|92_aa XGSGPEQYAPEIRLEKGKEGPQVQETSGFLNAHLPTHFGQVTMDSVAGKEKVTVYPTHEK LFLVPHVPTPSPPMLSESLGVRNTAKKFKKFC >PPARG_1|GENSCAN_predicted_peptide_2|445_aa MEGIQKAFRKERKSEMSLKDREALDGRNKEREQSEERQDSTKREESVTNTCGAASSHGPH FEHHSLLQSIVHICPSTSLLQALLMYRARKNNSAKWQTEMSYNVTKKQVRLPGGVVSAWH LQEPTKQRLRLSSPPGCGWGSWLRAPSAEARRHPVPVPSPSAGRRASTTRQGTGPGQLQA RPSLNGPPVPKRRSPLGSGQRTGPPPQQGCRAASGRTHADLRFPGSRHPAPKFPRSGSRR LRTSAGDAEVPVSPAPRPPGALPRGAVLEAGTHRLASTRVGTGRGSLCPRPPPLVRAPVD ATLSPGALSPRPLHPVTREPPARDPSVRVLPDHDPASAPDPSAETPFSPALIRLGPRYLV SFAPRHHRWEAAQRGSHFRGGIRSLGGCPRPGPVWGDRGVGLPLGQSGLPFTRRSARPSS QDVLSSDILKENLIKAYFGSLGFLF >PPARG_1|GENSCAN_predicted_peptide_3|317_aa MGETLGDSPIDPESDSFTDTLSANISQGKVPSRYGYWGRGGIYILCFLVPSFLFLVLVEN SGKEYVGEMTMVDTEMPFWPTNFGISSVDLSVMEDHSHSFDIKPFTTVDFSSISTPHYED IPFTRTDPVVADYKYDLKLQEYQSAIKVEPASPPYYSEKTQLYNKPHEEPSNSLMAIECR VCGDKASGFHYGVHACEGCKGFFRRTIRLKLIYDRCDLNCRIHKKSRNKCQYCRFQKCLA VGMSHNEALSVIPKSAPSCFQYAQENMNVPQSKCTPFRVNLISAPWSLISLVDECSFPFG HALTALKEASEGTGREP >PPARG_1|GENSCAN_predicted_peptide_4|316_aa MVTRIKGWENTEELKSIENLEEAISSGREKSIQDFYKVLVNPTIRFGRMPQAEKEKLLAE ISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVIYDMNSLM MGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVT LLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNA LELDDSDLAIFIAVIILSGERKIRGQSNLWFLNKQNNPDAAVTAEHSFQLTEHQCSISTE FEEHRVWEYSSLFPVP >PPARG_1|GENSCAN_predicted_peptide_5|104_aa MEQNETELRLEDDQDQVMKDIKDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFA KLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPLLQEIYKDLY