-------------------------------------------------------------------------------- GrailEXP v3.31 [March, 2002] http://compbio.ornl.gov/grailexp/ Authors: Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and Edward C. Uberbacher, 1996-2001 Reference: "Automated Gene Identification in Large-Scale Genomic Sequences", Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4, Number 3, 1997 Sequence: >GrailEXP Input Sequence (8411 bp) -------------------------------------------------------------------------------- PERCEVAL Exon Candidates (5 predicted) Index Std Begin End Frm Type Len Scr Quality Exon 1 + 1249 1475 0 Initial 227 74 Good tccatagccacggtcctgaaacgccccgccgggcaggccggaccaatggacgccgagctc ggccgtgcgtcacgcgacgctggccaatcgcggagggccacgaccgtagaaaggccgggc gcggcgaggctgggcgctgggcggctgcggcgcgcggtgcgcggtgcgtagtctggagct ATGGTGGTGGTGGCAGCCGCGCCGAACCCGGCCGACGGGACCCCTAAAGTTCTGCTTCTG TCGGGGCAGCCCGCCTCCGCCGCCGGAGCCCCGGCCGGCCAGGCCCTGCCGCTCATGGTG CCAGCCCAGAGAGGGGCCAGCCCGGAGGCAGCGAGCGGGGGGCTGCCCCAGGCGCGCAAG CGACAGCGCCTCACGCACCTGAGCCCCGAGGAGAAGGCGCTGAGGAG gtgggcgaggggccggggtctggggccagatctgaagccgggactagggacaggggcagg ggcaggggctgggagcggggacccagcactggccgccccgcagggctccgtcgcctttgg cctggcgggtcggtgccagcgtggcgcggggcggggcaggaagcccggactgaccggatc Exon 2 + 2620 2731 2 Internal 112 99 Excellent attgacagaagactgtattttttattttgttttattgaggggaggagcctgaagtgtatt ttatcattagtctgtcttatactgtaaataaaaatgaaagcaccagctggtaaagttttc aaataaagacataaataaggtttgatatgactcagtgtggtatgttccttctcttcctag GAAACTGAAAAACAGAGTAGCAGCTCAGACTGCCAGAGATCGAAAGAAGGCTCGAATGAG TGAGCTGGAACAGCAAGTGGTAGATTTAGAAGAAGAGGTAAAACTACTTAAG gtcaaactcttttatccattgtatacccttccttggtgaatgttctgatatttgcttccc atcccaagttgtttcagcccctattagaatacaattgaatatatgattaaaagttaaact aggctgggcatggtggctcatgcctgtaatcccagcactttgggagcctgagttgggcag Exon 3 + 4568 4726 0 Internal 159 100 Excellent ttattaagtagcttgcttttccataattatggcctagctttttaaaacctactatgaaca ccacaagcatagagttttccaaaagttcaagaaggaaaggaaaccaattatactgaatca ggtagattcttaactgaaataattagatgttttaatagcctcttatgaactttcttccag AACCAAAAACTTTTGCTAGAAAATCAGCTTTTACGAGAGAAAACTCATGGCCTTGTAGTT GAGAACCAGGAGTTAAGACAGCGCTTGGGGATGGATGCCCTGGTTGCTGAAGAGGAGGCG GAAGCCAAGGTAAATCATCTCCTTTATTTGGTGCCTCAT gtgagtactggttccaagtgacatgacccagcgattatgtttacagtctggacttctgat caagagcgttcttgaaattttccttcagttttaagacattttcatgcaggcagagtgttc ttcccctaaaggcacttgacactcattttttaagtgtgtagtgaacagtactaagatcta Exon 4 + 5581 5726 0 Internal 146 74 Good gcaaatatcttatcttgctcttctcaataataataatgttgttagataataaagttctat agcaatttaaccctagaatctttttgaaaagtaattctttaaagttgagaatcacagctg tctagcaagcatttccttgggcacttgaagctgtttattcactttggtctttcctcccag GGGAATGAAGTGAGGCCAGTGGCCGGGTCTGCTGAGTCCGCAGCACTCAGACTACGTGCA CCTCTGCAGCAGGTGCAGGCCCAGTTGTCACCCCTCCAGAACATCTCCCCATGGATTCTG GCGGTATTGACTCTTCAGATTCAGAG gtagggatcattctgacttattaaagagctatataaccagttaattccatctgtttgatg cttgacatccctaactagacagatgagggttgaagttagtttttggtggggttggaggtg aacatcaactaccttcctagttccaggtaatatagaacatggagtgaagtgtagataaat Exon 5 + 6041 6598 0 Terminal 558 85 Good tcctagttccaggtaatatagaacatggagtgaagtgtagataaatgggtctggtgggtc ccgaggtcatcttatcacataatgactaatttacattatggaacccagtacaaagtgttc cagttagattttccattgtattctgacagttgtacttcatttaatttttgcctcttacag TCTGATATCCTGTTGGGCATTCTGGACAACTTGGACCCAGTCATGTTCTTCAAATGCCCT TCCCCAGAGCCTGCCAGCCTGGAGGAGCTCCCAGAGGTCTACCCAGAAGGACCCAGTTCC TTACCAGCCTCCCTTTCTCTGTCAGTGGGGACGTCATCAGCCAAGCTGGAAGCCATTAAT GAACTAATTCGTTTTGACCACATATATACCAAGCCCCTAGTCTTAGAGATACCCTCTGAG ACAGAGAGCCAAGCTAATGTGGTAGTGAAAATCGAGGAAGCACCTCTCAGCCCCTCAGAG AATGATCACCCTGAATTCATTGTCTCAGTGAAGGAAGAACCTGTAGAAGATGACCTCGTT CCGGAGCTGGGTATCTCAAATCTGCTTTCATCCAGCCACTGCCCAAAGCCATCTTCCTGC CTACTGGATGCTTACAGTGACTGTGGATACGGGGGTTCCCTTTCCCCATTCAGTGACATG TCCTCTCTGCTTGGTGTAAACCATTCTTGGGAGGACACTTTTGCCAATGAACTCTTTCCC CAGCTGATTAGTGTCTAA ggaatgatccaatactgttgcccttttccttgactattacactgcctggaggatagcaga gaagcctgtctgtacttcattcaaaaagccaaaatagagagtatacagtcctagagaatt cctctatttgttcagatctcatagatgacccccaggtattgtcttttgacatccagcagt --------------------------------------------------------------------------------