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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (4146 bp)
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PERCEVAL Exon Candidates (3 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1206       1341   0    Initial    136    65    Marginal
gagactccgtctcaaaaaaaaaaaaagaaaagaaaggggggccccaggcgagctcggtcc
cacccagcaggcgggggcggggcagggcagagtgctccccccgccccccgcttcctcccc
gagggccccggagcccagctcagcctcagtccccgcagcttgtgcggcggcgtcggcacc
ATGAGGCGAGGGCCCCGGAGCCTGCGGGGCAGGGACGCGCCAGCCCCCACGCCCTGCGTC
CCGGCCGAGTGCTTCGACCTGCTGGTCCGCCACTGCGTGGCCTGCGGGCTCCTGCGCACG
CCGCGGCCGAAACCGG
gtaagggggacccacggggcgcgcggcgccggcagctgcggggagaacggggccccgatc
gccagggcgcaggcagagccccgacccccgggggcgccgagggctgaaaggaccctgtgg
gcagggcctggaggggcccgcgatcaccgcgtggccctcaccgccgcctctctccctccc

Exon  2 +       1648       1878   1   Internal    231    86        Good
cctggaggggcccgcgatcaccgcgtggccctcaccgccgcctctctccctccccttgtc
caccgccccccggctgtccctcccctccccggccagcctcgcccccctccgcccctcccc
gtccccgctcctccctcccctcggccccctggcctccctccctgtcccctcccgaagcag
CCGGGGCCAGCAGCCCTGCGCCCAGGACGGCGCTGCAGCCGCAGGAGTCGGTGGGCGCGG
GGGCCGGCGAGGCGGCGCTGCCCCTGCCCGGGCTGCTCTTTGGCGCCCCCGCGCTGCTGG
GCCTGGCACTGGTCCTGGCGCTGGTCCTGGTGGGTCTGGTGAGCTGGAGGCGGCGACAGC
GGCGGCTTCGCGGCGCGTCCTCCGCAGAGGCCCCCGACGGAGACAAGGACG
gtgagttccgtgtgtaggggaaccagtctgagcggggcgcaggggctggggtgtcgggac
ggtctagggggagatgcatggcccctgagggggagagaagggctttaaggggaaacggag
acagagtggaaaagagtttgcgctgaggagctcaggctggggagggagacatagtcctgc

Exon  3 +       2425       2612   1   Terminal    188    69    Marginal
ctccctgccctgccagctccccactggccaggcctctggactcagggtcagccaggtgcc
acccctccccaccctgcattgggcttcatttgacggaggactgcccctccagaggagtct
tctaggggagggagggaaggctgtgactgagtacggagcctctaccccctctgcctgcag
CCCCAGAGCCCCTGGACAAGGTCATCATTCTGTCTCCGGGAATCTCTGATGCCACAGCTC
CTGCCTGGCCTCCTCCTGGGGAAGACCCAGGAACCACCCCACCTGGCCACAGTGTCCCTG
TGCCAGCCACAGAGCTGGGCTCCACTGAACTGGTGACCACCAAGACGGCCGGCCCTGAGC
AACAATAG
cagggagccggcaggaggtggcccctgccctccctctggacccccagccaggggcttgga
aatcaaattcagctcttcactccagcatgcacatgccctctttctgggaccaggctaact
ctgcagaagcacagacactacagaccacagcattcagcccccatggagtttggtgtgctt

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