-------------------------------------------------------------------------------- GrailEXP v3.31 [March, 2002] http://compbio.ornl.gov/grailexp/ Authors: Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and Edward C. Uberbacher, 1996-2001 Reference: "Automated Gene Identification in Large-Scale Genomic Sequences", Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4, Number 3, 1997 Sequence: >GrailEXP Input Sequence (86122 bp) -------------------------------------------------------------------------------- PERCEVAL Exon Candidates (19 predicted) Index Std Begin End Frm Type Len Scr Quality Exon 1 + 5218 5265 0 Initial 48 95 Excellent ggttagggaaacttgggcacagaatttacattttcaacttggtgataagatgggtttaag gtaagaatcaaataggagaaagccttagctgttccagcggcccatgtttaaaagaatgtg cttctttttccaagtatttctgccgcttgcatgcactgagcttctttggaaaggagcacc ATGCAGGCATATTTTCCAGACAGGACCGGATTTGCTCGTTACTCAGAG gtgtgtgcattctttgcttttaggatatttaattagcatcttttaatagtgatattacgg tgtcttaaaagtttatgcatttgaaaagaaaagaacttactccttgccaggtctcaacct atcatggttatctttgcagctgagctgcgttggttttgaggctcacatatggtaaaagtg Exon 2 + 6766 6825 2 Internal 60 93 Excellent ggtcaccacagtactgagatgtaggtgggagctggctgaagggggaggcacctaaacagg agcgcagacagcggcacctacggatgatggcccgctccatcccaccgcagcgaaattgtc ccagacctctgcagctccccccacacctagactgagagagagctcttcttccttctgtag GGAGCAGGTGTTTCCTCCAGATGTCCAATATGTACCTCCCATTACAGCGGTGTTAGGAAG gtgagggctgccgctgaaagggtccccttcataatcatcactagatttggggtatattat ggattaaatagaatttttataagatgacctggggatctatttaaataaaatcctctttct ttctgcaagatcatggatttaaattcaacacaactgacttcatagggaaggggtatggtg Exon 3 + 18155 18321 0 Initial 167 64 Marginal aaaagatgttcatgtgcctttccctcattagtcactagggaaatgcaagttcatagacat ctctcttggtagaaagatatcactacacacccacaagagtggctgtaattaagcagtctg accaagtatgcgtaagaatgtggaataagaactctcatacactgctgatgggaatgtaaa ATGATAGCCACTTTGGAAAACATTTTGGCAAATAATACCACTTACATTATTATCGAAAAT ATTGTATACCTGAAAGAACTCAAAGTGAAAAAGCTATATACTGTCTGCTTCCAAGGCTAC ACATTATGGGAAAGGCAAAACTATGAAGACAGTAAAAAGATGCGCCA gtggttgccaggggctcatggggagggaaagaggaatgaataggtggaacacagggcatg tttagggcagtgaaactattctgtatggtaccgtaacgatgaatacatgttattaggcat ttgtcaatacccataaaatgtacaacacaaagagtgaaaatgaaaactgtgggcttcagt Exon 4 + 26064 26114 1 Internal 51 58 Marginal aatttgttgaggtttgtttaatggtcaaagacatggtctgtctaggtgaatgttccatgg gcttttagggaaaaaagtatattctagtgttgttgaatggtgtcttagtccattcaagct gctataacaaaataccgtaaactgggtgatttataaacaacagaaatttttctctcacag TTCTGGAGGCTGGGAAGTTCAAGATCAAAGTGCCAGCAGATTCAGTGTCAT gtgaggacgtgcttcctgcttcatagataagaggtacatacacgtttaggagcatcgtgt cttcctggtggatgaattctgttatcattaggtgatcctttgagcacttttaaaaagaat ctgttggccgggcgcagtggctcacgcctgtaatcccaggactttggggggccaaggcgg Exon 5 + 26951 27162 0 Initial 212 82 Good tctcaaaaaaaaaaaaaaaaaaatcgatagtatcatatcctccaggattcaaagtgaact tcaaacagtcttatgtagtctaaattttggaatgcatcccagtattgagttgcagcaggg atttgagtttttgtgaagagagagaggtatatcagaatcttgggcataaactaaggagcc ATGTCAGAACCTCAGGTGTATGCCAATGAGATAGATCAGAACCTCAGGCATGTACCCGAT GAGACAGATCAGAACCTCAGGCGTGTACCCGGTGAGACAGGTCAGAACCTCAAGCGTGTA CCTGTTGAGACAGGTCAGAACCTCAGGCGTGTAGCCAGTGAGACAGGTCAGAACCTCAGG TGTGTACCCAGTGAGACAGATGAGAACCTCAG gtgtgtaaccagtgagatatatcagaatcttgggtatttacccaaagaggtatagcagag tctcaggtatatactcaagaaggcatatcttgaggctttaagtatctagctaaggattta tatcaggatctcaggtttatacccagggaggtatagcagaatttggggtatagatctaag Exon 6 + 27892 28084 0 Initial 193 59 Marginal tcaggcagtgaagggcactgatggttgtaagacaaggtgagaggtgtggcttgagagagt ttccaggttgcagtgcagggagaggggaaactgaggcagatcttggcagacttcctcagt tgacaaaatagagctgagagtccagggagaccatggtgtatagattatccaaagcaaagt ATGAGAGGTGCAAGCCATATACAGAGGGACTCCAGAGATCTACCAAAGTACTTCTTGGTG CATCCATATGAGCAAAACTACTTGAGGCCAGGAAAAGAACCATCTGAGAGGATTAGAAGG AACAGTGCCCAGTACTTGTGCCAGCCAGGAATGGTGCCTGATACTCACGCAGGGCCAGGA ACAGTGCAGGGAT gtgagtgtttgttaggagagggaggtatatcagaatcttgggcataaagacaagaaacca tatcagaacatcaggtgtgtaccaatgagatagatcagaatctcgggtgtatacacagtg agatagatcagaatctcagatgtgtacacagtgaagcagatcagaatctcagatgtatac Exon 7 + 34802 34873 0 Terminal 72 47 Marginal tgatagcatactcttcctttttcatgagtgcagtgtttctgcatggctctcatcagaaca tgctagtgtctcccatttctcataactttctagagtgaggaccatttgaacttggagtgc cctcattttaaaactctgtggttgaccttgttcccctcttttgctgctgcttttcaccag ACTTTGAAGAAGCAGAAGTACATTCAGAACTTGTCTGCTCTGGCAAAAGACAATACTGTT GGCTTAATCTAA aaattgaagaagaaagctcaaggagagaagtttaaaaatataccacctctggctgggcgc ggtggctcacatctgtaattccagcactttgggaggctgaggcaggtggatcacctgagg tcaggagttcaagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaa Exon 8 + 41530 41585 2 Internal 56 56 Marginal tggtgacagagtgagactccatctcaaaaaaaagagaaagaaagaaatagacattgaaca cctgctacacagcagggattgtgctagaagtatggatgcaaagattaggtgaatatgttc cctagcctcacaaagcatacagtctagtaggagagacagacacgtaaaaagtttcaacag CACAGATAATCAGGGCTACACCAGAATTGGGCCCAAGATGCTGCAGGAATCTATAG gtgaatgggtttcatgaaggaagagcttcttctcccatttataactcattttagcctaat cttccaaacagtcacgcatctaagagcaggtgatgcagaaaataccctcgtgttagttat gaattaccgttggaatccttccagtgtttgcacctgccctgtgctcgggtaacataaaac Exon 9 + 47785 47906 0 Initial 122 84 Good gaacgttgttatacgtcagtcttaccaattgttcctctttcctcccagtagcttggagct cggcggcacaaccagcaccatctggtcgcgatggtggacacggaaagcccactctgcccc ctctccccactcgaggccggcgatctagagagcccgttatctgaagagttcctgcaagaa ATGGGAAACATCCAAGAGATTTCGCAATCCATCGGCGAGGATAGTTCTGGAAGCTTTGGC TTTACGGAATACCAGTATTTAGGAAGCTGTCCTGGCTCAGATGGCTCGGTCATCACGGGT AA gtgtgccgtttcctagaaagttttatttagaaatgtttcttcctccaagaaaactgttct ctcttttttttttttttttttttgagacggagtctcgctctgtcgcccaggctggagtgc aatggctcgatctcggctcactgcaggctccacctcctgggttcacaccattctcctgcc Exon 10 + 49653 49763 0 Initial 111 41 Marginal ggggactgtaattctctctaggttgtatatttttaaaagacttcagcagtgtgataaacc tgggtggtgtgtacatgggtattacagtcatgttgcttaatgacagggacaggttgtgag aaatgcatccttaggtgatttcatcattgtgtgaaagtcatagagtacacttaaacccag ATGGTAGAGCCTGCTGCACACCGAGGCTCTGCGGTGCAGCCTGTTGCTCCAAGGCACGCA CCTGTACAGCGTGTTACTGTACTGAACGGCGTAGGCCCCTGTGACACAATG gtaagtatttgtgcgtctaaacataccaaaacatatagtagaaaaggttacagcaaaaat acagtattatcatcttatgggaccatgataccacagttgaacttatggtctattgttgac caaaatgtcactgtgcagtgtgtgactatacagaaataagctcagagaaattaagtaact Exon 11 + 53461 53560 2 Terminal 100 65 Marginal agtttacttgtgctgtttctaattcctctttccccagccccgtgcctccctgcctccctc ccccagtaaaccatgaatccactttctatcattctaggttgctttatatttcctagaatt ttatataaatggaatcatacagcacgtactctttctaggctggcttctttcactctgcag AATGGCTGTGAGACTCATCTGCATTGCAGCAAGCATCAATAGTTCATTCTTCATCCATCA TGTGGACATAGCACAGTTTGCTGATTCACGCACCTGTTGA tgagcatttaggttgtttctagcttatggctattacaaataaagctgctatgaacattca cgtacaagtctctgtacaaccctctgctttcatttcttttgaataaatacctaggagtat gacggctggaacagatggcaggtgtttgtgtaactttttaagaaactgccaaaatctttt Exon 12 + 62443 62560 0 Initial 118 57 Marginal gccactccactccagcctgggtgacagagtgagactctgtcccaaaaagaaaaagaataa actgctgtatacatgtgtaggttttgtgtggacagaagttttcaaatcagttggacaaat acctaagagtgtgattccatcatacagtaaaactgctttgctttgtcagaaactgccaga ATGTCCTCCAAGGGGGCTGTCTCATGTTGCATTCCCACCAGCAATGAATGGGGGTTCCTG TTGCTCCACATCCTCACCAGATTTGATGATGTCAGTTTTGTGGATTTTAGTCATCCTA gtaggtgtgtggtgacaccacattgttgttctcattctcagtgccccgatgacatatcat gctgagcattgtttcatatgcttacttgccatctgtatatcgtccttgctgaagtgactg ttcagatgttcagatcttttgcccattttctttctttttttttttttttttccttttgat Exon 13 + 63565 63723 0 Initial 159 65 Marginal tggtgttgcccacacagatttttatactgtattctggtgccatttactgagttaacaatt gcggaagaactggaagaaaggaagcaaacaaaacgagttctgcgtggcactgtcagtgcg ggggcatggggagtcctgcagggtgaggtatgggcggtatggcaaggcgcgggcccatag ATGTGCAGGTCTGGAGATGTGTGCAGCGGAGATGTGCGGGCCCGAGATGTGCGGGTCCGA TGTGTGGGTCCGGAGATGTGCGCGTACCCAGAGGTGCAGATCGGAAATGTGGGGGTCCGG AGGAAATGTGCGGATCAGGAGAAGTGCCAGTCCCGAGAT gtgcggatcggagatgtggagggctaggagatgcgtgggtccggagatgcgcagatcagg agatgggcgaatcggagatgcgcgggtccggaaatgtgcagagcggagatgtgtggatca ggagatgttggggggtcaggagatgcgggggtccagagatgtgggggtccggagatgtgc Exon 14 + 64484 64644 1 Internal 161 71 Good gcagctgtaggagtgcaagagggtgtgacccagaggcagggcccggccccgcatgggtgt tctgaggtttatgcctcagcactagaagcctcgtatgcgaaatcacatcctcatagaccc ggttcagacacaggatagtgatgcctggactattcatccgtctctcctctttttccccag ACACGCTTTCACCAGCTTCGAGCCCCTCCTCGGTGACTTATCCTGTGGTCCCCGGCAGCG TGGACGAGTCTCCCAGTGGAGCATTGAACATCGAATGTAGAATCTGCGGGGACAAGGCCT CAGGCTATCATTACGGAGTCCACGCGTGTGAAGGCTGCAAG gtagaggggagctggaacagggcctggtggccgccaccatcaactacttatggtcacttt tatagcaaatggcagtcattactgagagattgcagaaagtcccggataagaaactgactt caggccaggcgcggtatctcatgcctataattccagcactttgggagaccgagatgggtg Exon 15 + 67574 67712 0 Internal 139 100 Excellent agcctcctaaagtgctgggattacaggcatgatcaccatgcctggcctggaataactttt ctctaaattttgttcatttaaaaagaaacaataaatgagcaacaaaaaaggtgagtaaag caagtgcgctggtttctcagtggcccaggtctttaaatccactgtgtattaccctcacag GGCTTCTTTCGGCGAACGATTCGACTCAAGCTGGTGTATGACAAGTGCGACCGCAGCTGC AAGATCCAGAAAAAGAACAGAAACAAATGCCAGTATTGTCGATTTCACAAGTGCCTTTCT GTCGGGATGTCACACAACG gtaggtaaggtggccctgcacattttcccagttcgttcctcagttccccttccttgctcc aagggaacagatcaagctatggatgaatgtgcttcaacatttcacacccaagtcattttg taatcagagtggcctaagaaaataaaagtcgcccaggcgcggtggttcacgcctgtaatc Exon 16 + 69123 69329 1 Internal 207 91 Excellent tatggagtttgagtttttcatctctccatagtggaaagccgaatagtaatgaaggatggg tctgaactgcctgtgaattttcattcctggtttaaagtcctgggggagcccctcgtccag ccctgtccgcgcagtcatgacctcactgctcatgcctgtgtttccccctccaaaccctag CGATTCGTTTTGGACGAATGCCAAGATCTGAGAAAGCAAAACTGAAAGCAGAAATTCTTA CCTGTGAACATGACATAGAAGATTCTGAAACTGCAGATCTCAAATCTCTGGCCAAGAGAA TCTACGAGGCCTACTTGAAGAACTTCAACATGAACAAGGTCAAAGCCCGGGTCATCCTCT CAGGAAAGGCCAGTAACAATCCAGTAG gtgtttgcggctgttctgggttctcttggcaacatggaaccagtgtcgtagaggacgatt aaggacacatgtgttgaatgttgagaaaattatatttatcccacagttaagcaaaggaca gcgaagatggaaacagttcattctgagactctgagctgtagcttaacaacaactcctttc Exon 17 + 79125 79294 1 Internal 170 72 Good cagaattatctccaaactttaacaaacaatggtcagaactgtttttaaggtcttggagag agatcattttcagtctttattaatcggacttgagattatttagaaacttggctctgaata ttgtattcagaatgttttcactcatttgtgagtaattttttaaatatcccctttcctcag ATGCAGAATCAGGGCTTTTTGTCCAGCATTATGTTGCAAGTCCTGGTTCTGTTGAAACAT TCCATACCATCTGTGTGATGGTTATCGGCACCTCCACCGGTGCCCTGAAGACAGTTTTGT GCTGTGAGTCCAGAAACAGGAAACACTTCAGGCTGTGTGTCAGAAGCATT gtcagtggttgtgttttgcccactggcagggggcattctttaaatcctgggatgcttctg cgctttgggctccactgttccagcagtgattagaaataacgctgtaggccgggcgcggtg gctcacccctgtaatcccagcactttgggaggctgaggtgggcagattacctgaggtcag Exon 18 + 81103 81567 0 Terminal 465 89 Good tgtcttattttccccaaccgattttgaagttgagtaaggactatgttccgcgggtatctt gagtcctctgaggcactgagcttggtgatttggacgcaggagctgctcattagtgagctg atagctgggagcatagcgcatcccacatcacctgacttaccttggtgtcctcctttgtag CCTTTTGTCATACATGATATGGAGACACTGTGTATGGCTGAGAAGACGCTGGTGGCCAAG CTGGTGGCCAATGGCATCCAGAACAAGGAGGCGGAGGTCCGCATCTTTCACTGCTGCCAG TGCACGTCAGTGGAGACCGTCACGGAGCTCACGGAATTCGCCAAGGCCATCCCAGGCTTC GCAAACTTGGACCTGAACGATCAAGTGACATTGCTAAAATACGGAGTTTATGAGGCCATA TTCGCCATGCTGTCTTCTGTGATGAACAAAGACGGGATGCTGGTAGCGTATGGAAATGGG TTTATAACTCGTGAATTCCTAAAAAGCCTAAGGAAACCGTTCTGTGATATCATGGAACCC AAGTTTGATTTTGCCATGAAGTTCAATGCACTGGAACTGGATGACAGTGATATCTCCCTT TTTGTGGCTGCTATCATTTGCTGTGGAGGTGAGTGGTTGATTTAA tctgctggtatcatgtcactgacaggctcctgtcttgaaaaatttgacaatgggaaatcc agtaccagcctgagctgttccagtggaggggacactcacatggtgggaagacgtctgacc cccagtcactgctgagaattcagtgggaattataacaatattgtataatattatagtata Exon 19 + 84482 84691 0 Single 210 85 Good agtcaagttgacaatatctaaaggcagctcagtttttttctaagaaaggccacataaaat aggcatgtttggttcctgaaactgataagcagttcttgggtgattatcacactcaaacct ctctctcttctttcgagactagatcgtcctggccttctaaacgtaggacacattgaaaaa ATGCAGGAGGGTATTGTACATGTGCTCAGACTCCACCTGCAGAGCAACCACCCGGACGAT ATCTTTCTCTTCCCAAAACTTCTTCAAAAAATGGCAGACCTCCGGCAGCTGGTGACGGAG CATGCGCAGCTGGTGCAGATCATCAAGAAGACGGAGTCGGATGCTGCGCTGCACCCGCTA CTGCAGGAGATCTACAGGGACATGTACTGA gttccttcagatcagccacaccttttccaggagttctgaagctgacagcactacaaagga gacgggggagcagcacgattttgcacaaatatccaccactttaaccttagagcttggaca gtctgagctgtaggtaaccggcatattattccatatctttgttttaaccagtacttctaa --------------------------------------------------------------------------------