GENSCAN 1.0 Date run: 16-Jan-104 Time: 04:59:55 Sequence PPARA_1 : 86122 bp : 46.25% C+G : Isochore 2 (43 - 51 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.01 Init + 89 494 406 1 1 39 55 187 0.560 5.26 aacgcgcgcgggggtccgcggtccgggcttcccaggtcccgggacccggagggcggcgga cgggggaggggcaggggctgggcggcgcATGCGCGGGGCCCGGGGTCTCGGGGTCTCCGGGTCCCGGGGACCCGGGGGCCCGGGGTGC GCGGCTGGGGACCTGAGGGCGAGGAGCGAGGACACACACCGAGGACTCTTGCGAGGGATC TCGGGGCCCAGCTCGGCCTCCCTCCTAGCGCTGGGGGCCTGCCCGGAACCCGAGTCCGCG GCTGTCCCTGGGGTTTGGCGCTGCGCGGAGGTCGGGTCTGGGGACCGCAGCGACTCTGGG TCTTCGGGTTGTCCCCTCGGAGGGAGGGCCCACGGGCGGGGACATCGGGACTTGCCCTTT CCTCGGCGCAGCGGAGCTGGGGCGTCGCCGACTCAGAAGGTGCTTTCCGAGACCTCCAGG GATCTCCGAGGCGAGGAAACCCGGGCCCCGGACAGACCGACCCTGG gtgggtgcgcccggcttctgccgtcggacggagacgcgcgtgtttgttcctccagctgcg accacctttgaggaacggttcccactttgtgccccaacgcggcggggcgaccccggacag gctgcgctgggccgggtggcttctctgcggaagccgcgccacgtcgctcccggtcggggc 1.02 Term + 550 680 131 2 2 54 55 72 0.467 -1.16 acatcgggacttgccctttcctcggcgcagcggagctggggcgtcgccgactcagaaggt gctttccgagacctccagggatctccgaggcgaggaaacccgggccccggacagaccgac cctgggtgggtgcgcccggcttctgccgtcggacggagacgcgcgtgtttgttcctccag CTGCGACCACCTTTGAGGAACGGTTCCCACTTTGTGCCCCAACGCGGCGGGGCGACCCCG GACAGGCTGCGCTGGGCCGGGTGGCTTCTCTGCGGAAGCCGCGCCACGTCGCTCCCGGTC GGGGCCGCTGA gggtcgggcgcccaggtctttccggagtcccgggctgcgcggcccgcgtggtgcgggtga agctggaggggcgcggggtggtgccagtggaagtcaggagggtcggccctgccccctcac gcaccccaaccgggcacaactgcacgcctgtgcttttctgaagtcttttttaaaagttaa 2.04 PlyA - 3988 3983 6 1.05 2.03 Term - 21020 20888 133 1 1 156 42 20 0.435 1.76 2.02 Intr - 21518 21415 104 2 2 100 91 41 0.483 4.57 2.01 Init - 22162 21956 207 1 0 64 0 140 0.314 1.62 2.00 Prom - 33521 33482 40 -3.16 3.01 Init + 47695 47902 208 0 1 94 114 187 0.946 20.88 ctccagcctgggcaacagactgagactctgtctcaaaaaaaaaaaaaaaagaataaataa ataaataataaaaaataaaaacaaacaagtgaacgttgttatacgtcagtcttaccaatt gttcctctttcctcccagtagcttggagctcggcggcacaaccagcaccatctggtcgcg ATGGTGGACACGGAAAGCCCACTCTGCCCCCTCTCCCCACTCGAGGCCGGCGATCTAGAG AGCCCGTTATCTGAAGAGTTCCTGCAAGAAATGGGAAACATCCAAGAGATTTCGCAATCC ATCGGCGAGGATAGTTCTGGAAGCTTTGGCTTTACGGAATACCAGTATTTAGGAAGCTGT CCTGGCTCAGATGGCTCGGTCATCACGG gtaagtgtgccgtttcctagaaagttttatttagaaatgtttcttcctccaagaaaactg ttctctcttttttttttttttttttttgagacggagtctcgctctgtcgcccaggctgga gtgcaatggctcgatctcggctcactgcaggctccacctcctgggttcacaccattctcc 3.02 Intr + 64484 64644 161 0 2 109 75 203 0.983 20.81 gcagctgtaggagtgcaagagggtgtgacccagaggcagggcccggccccgcatgggtgt tctgaggtttatgcctcagcactagaagcctcgtatgcgaaatcacatcctcatagaccc ggttcagacacaggatagtgatgcctggactattcatccgtctctcctctttttccccag ACACGCTTTCACCAGCTTCGAGCCCCTCCTCGGTGACTTATCCTGTGGTCCCCGGCAGCG TGGACGAGTCTCCCAGTGGAGCATTGAACATCGAATGTAGAATCTGCGGGGACAAGGCCT CAGGCTATCATTACGGAGTCCACGCGTGTGAAGGCTGCAAG gtagaggggagctggaacagggcctggtggccgccaccatcaactacttatggtcacttt tatagcaaatggcagtcattactgagagattgcagaaagtcccggataagaaactgactt caggccaggcgcggtatctcatgcctataattccagcactttgggagaccgagatgggtg 3.03 Intr + 65125 65311 187 0 1 62 53 98 0.618 2.96 cgagaggcaaagacaggagaattgcttgaacccaggagccagaggttgcagtgagccaag attgcgccactgcactccagcctgggcaacaagagtgagactccatcttaaaaaaaaaga aagaaaaaaagaaaaagaaaaagaaactgacctcagtgatagattagcctctctttatag CACAGAACCCCTGAGAGCGTAAGCCCTGTTGTGAACTGCGTATTTGAGGAATCTAGCTTG TACGCCCCTTATGAGAATCTAATACTTGATGTTCCAAGGTGGAACACTTTCATCCTGAAA CTATCCCTCCCCACCCCCATCTGTGGAAAAATTGTCTTCCATGAAACCGGTCCCTGGTGG CAAAAAG gttggggattgctgctttagagagtctaggacaaatggttcctctgtgctttgtaaatac ttagagaagtgcattctttaaaagaaaataagtcacattggaccgggtgcagtggctcac gcctataatctcagcactttgggaggccgaggcggctggatcacctgaggtcaggagttc 3.04 Intr + 65956 66125 170 2 2 60 9 88 0.533 -2.23 cgttgatctctggagcctccctgaaggccaggtggggcaggtgttctcatgctcctgcca gggaaattggccatcagagacacagagtatcttgcttagggtcccacagcccccagcagc agggactggaaccagagactggctgctcctgctccccagcagttccttcctgcacatcag GGGCTTCTCCACCTGATTCAAGCGACAGGAACCCCCTGTGCATCTTCATCCTCCTGCTGG CTCAGCCTGCCCTAAACAGATGTGACCTGGGCCAGGAGTGCATGAAGGCAGGCCCTGTTG TCCTGCATGCTGCCAGCTGGACTGGTGGCCCTTCCGTGTTTGTCAGCGTG gtgatgaggagagctcctgtagcagcgtccctttagggttgcacagacgtgctcaagtct ggcgccttatgtacgtgatatgtgggagatcatcatctgaatgtttggtttgaatcagaa atcccttctcacggtgcacgctgcaggtgttcactaacttggaaaatgccaccgcctttc 3.05 Intr + 67574 67712 139 1 1 92 90 172 0.997 17.84 agcctcctaaagtgctgggattacaggcatgatcaccatgcctggcctggaataactttt ctctaaattttgttcatttaaaaagaaacaataaatgagcaacaaaaaaggtgagtaaag caagtgcgctggtttctcagtggcccaggtctttaaatccactgtgtattaccctcacag GGCTTCTTTCGGCGAACGATTCGACTCAAGCTGGTGTATGACAAGTGCGACCGCAGCTGC AAGATCCAGAAAAAGAACAGAAACAAATGCCAGTATTGTCGATTTCACAAGTGCCTTTCT GTCGGGATGTCACACAACG gtaggtaaggtggccctgcacattttcccagttcgttcctcagttccccttccttgctcc aagggaacagatcaagctatggatgaatgtgcttcaacatttcacacccaagtcattttg taatcagagtggcctaagaaaataaaagtcgcccaggcgcggtggttcacgcctgtaatc 3.06 Intr + 69123 69325 203 1 2 77 50 287 0.200 22.80 tatggagtttgagtttttcatctctccatagtggaaagccgaatagtaatgaaggatggg tctgaactgcctgtgaattttcattcctggtttaaagtcctgggggagcccctcgtccag ccctgtccgcgcagtcatgacctcactgctcatgcctgtgtttccccctccaaaccctag CGATTCGTTTTGGACGAATGCCAAGATCTGAGAAAGCAAAACTGAAAGCAGAAATTCTTA CCTGTGAACATGACATAGAAGATTCTGAAACTGCAGATCTCAAATCTCTGGCCAAGAGAA TCTACGAGGCCTACTTGAAGAACTTCAACATGAACAAGGTCAAAGCCCGGGTCATCCTCT CAGGAAAGGCCAGTAACAATCCA gtaggtgtttgcggctgttctgggttctcttggcaacatggaaccagtgtcgtagaggac gattaaggacacatgtgttgaatgttgagaaaattatatttatcccacagttaagcaaag gacagcgaagatggaaacagttcattctgagactctgagctgtagcttaacaacaactcc 3.07 Intr + 81103 81550 448 0 1 100 105 608 0.666 56.62 tgtcttattttccccaaccgattttgaagttgagtaaggactatgttccgcgggtatctt gagtcctctgaggcactgagcttggtgatttggacgcaggagctgctcattagtgagctg atagctgggagcatagcgcatcccacatcacctgacttaccttggtgtcctcctttgtag CCTTTTGTCATACATGATATGGAGACACTGTGTATGGCTGAGAAGACGCTGGTGGCCAAG CTGGTGGCCAATGGCATCCAGAACAAGGAGGCGGAGGTCCGCATCTTTCACTGCTGCCAG TGCACGTCAGTGGAGACCGTCACGGAGCTCACGGAATTCGCCAAGGCCATCCCAGGCTTC GCAAACTTGGACCTGAACGATCAAGTGACATTGCTAAAATACGGAGTTTATGAGGCCATA TTCGCCATGCTGTCTTCTGTGATGAACAAAGACGGGATGCTGGTAGCGTATGGAAATGGG TTTATAACTCGTGAATTCCTAAAAAGCCTAAGGAAACCGTTCTGTGATATCATGGAACCC AAGTTTGATTTTGCCATGAAGTTCAATGCACTGGAACTGGATGACAGTGATATCTCCCTT TTTGTGGCTGCTATCATTTGCTGTGGAG gtgagtggttgatttaatctgctggtatcatgtcactgacaggctcctgtcttgaaaaat ttgacaatgggaaatccagtaccagcctgagctgttccagtggaggggacactcacatgg tgggaagacgtctgacccccagtcactgctgagaattcagtgggaattataacaatattg 3.08 Term + 84468 84691 224 1 2 32 44 280 0.594 15.08 tatgtctatcttccagtcaagttgacaatatctaaaggcagctcagtttttttctaagaa aggccacataaaataggcatgtttggttcctgaaactgataagcagttcttgggtgatta tcacactcaaacctctctctcttctttcgagactagatcgtcctggccttctaaacgtag GACACATTGAAAAAATGCAGGAGGGTATTGTACATGTGCTCAGACTCCACCTGCAGAGCA ACCACCCGGACGATATCTTTCTCTTCCCAAAACTTCTTCAAAAAATGGCAGACCTCCGGC AGCTGGTGACGGAGCATGCGCAGCTGGTGCAGATCATCAAGAAGACGGAGTCGGATGCTG CGCTGCACCCGCTACTGCAGGAGATCTACAGGGACATGTACTGA gttccttcagatcagccacaccttttccaggagttctgaagctgacagcactacaaagga gacgggggagcagcacgattttgcacaaatatccaccactttaaccttagagcttggaca gtctgagctgtaggtaaccggcatattattccatatctttgttttaaccagtacttctaa Predicted peptide sequence(s): >PPARA_1|GENSCAN_predicted_peptide_1|178_aa MRGARGLGVSGSRGPGGPGCAAGDLRARSEDTHRGLLRGISGPSSASLLALGACPEPESA AVPGVWRCAEVGSGDRSDSGSSGCPLGGRAHGRGHRDLPFPRRSGAGASPTQKVLSETSR DLRGEETRAPDRPTLAATTFEERFPLCAPTRRGDPGQAALGRVASLRKPRHVAPGRGR >PPARA_1|GENSCAN_predicted_peptide_2|147_aa MGPSNLSKQRGFLLNKPCGHPASWRLYLKPGNSCQHALNPTGPDVTSVFYLRTKLRLMAV WTVWFVDRLVLTHGCQVPHLEENPDHLLGMGSSRAWLPSTQIHRTLLESHFLAVPLMSPP CCPPCQDAPILMSAPPALTCFQPFLRC >PPARA_1|GENSCAN_predicted_peptide_3|579_aa MVDTESPLCPLSPLEAGDLESPLSEEFLQEMGNIQEISQSIGEDSSGSFGFTEYQYLGSC PGSDGSVITDTLSPASSPSSVTYPVVPGSVDESPSGALNIECRICGDKASGYHYGVHACE GCKHRTPESVSPVVNCVFEESSLYAPYENLILDVPRWNTFILKLSLPTPICGKIVFHETG PWWQKGASPPDSSDRNPLCIFILLLAQPALNRCDLGQECMKAGPVVLHAASWTGGPSVFV SVGFFRRTIRLKLVYDKCDRSCKIQKKNRNKCQYCRFHKCLSVGMSHNAIRFGRMPRSEK AKLKAEILTCEHDIEDSETADLKSLAKRIYEAYLKNFNMNKVKARVILSGKASNNPPFVI HDMETLCMAEKTLVAKLVANGIQNKEAEVRIFHCCQCTSVETVTELTEFAKAIPGFANLD LNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGFITREFLKSLRKPFCDIMEPKFDF AMKFNALELDDSDISLFVAAIICCGGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQK MADLRQLVTEHAQLVQIIKKTESDAALHPLLQEIYRDMY