-------------------------------------------------------------------------------- GrailEXP v3.31 [March, 2002] http://compbio.ornl.gov/grailexp/ Authors: Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and Edward C. Uberbacher, 1996-2001 Reference: "Automated Gene Identification in Large-Scale Genomic Sequences", Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4, Number 3, 1997 Sequence: >GrailEXP Input Sequence (26778 bp) -------------------------------------------------------------------------------- PERCEVAL Exon Candidates (7 predicted) Index Std Begin End Frm Type Len Scr Quality Exon 1 + 528 764 0 Terminal 237 84 Good tgataaactgagacaaggacagcctcttagtaaatgttccagaaattgagactgactgga taacacatcctttggcaagtcaagtagtttctaatcctttgctttcaaaacacttgaatg aaaaaccgagttgatagctgataaagcattaaactaatttttacagttttaaaatttcag ATCATCATCGGATTTAGGAACTATTACTCAGAAGAGTTCAGAACACAATTGAGGGCCATT GCTATACTATACCTCCTTATCTACATATTCATGCAAACAAAGTTTCCTAACATGGTCTAT AAAAATGAAGAGAAAAATATACTTGAGACTGAAGCCTGCCTCACTGGAGCTGAGTCCTCC TGTTCCTTGAGTGTGGGAACCAATCGGCTGGAAAAACAGCCCCACTCTTCTCATTAA cgaggcagtttcaatcaaatgtgtttatgtgttaatagttatctatcagtttgtaacata catatgttttctgaaaaactgaagtgatactacttgtgaaaataactcaggagatattaa aagcttttgatcacaaaataaattttaaatttttgaccccatttaaagctttttgttgta Exon 2 + 1092 1200 2 Terminal 109 48 Marginal aatttttgaccccatttaaagctttttgttgtagagaagtagggcgaggtaagcacaaaa gacttccaggaggcaaagtagatggcactggggtcaaattttgtgacagaagccgaatca cgtccaggaacgaccaaaacttccaaaggagcaaaagctagtccttttgcgggggcgcag GCAGAAGCGGCGGCAGAAGCGGCGGCAGAAGCGGCAGGCGGAAGCGGCAGGCGGAAGCGG CAGGCGGAAGCGGAAGGCGTCCATCTTTACCGTGTTCAGACCCGGATGA gtcctagtccccgccacacacaggtcgtgggttctcctttgagagtgaccactggttcct agagcttttcctaaactggagacggatcctgccctgggggtctcagtcaccgcgaggact cgagggtaactgccagaggtcccaggtggcccgaggtgatgccgggcgcagggaggggct Exon 3 + 3984 4086 2 Internal 103 95 Excellent agtgttttcaacaaatggcgctcgatgttcacatgaaaaaataaaagcatgtaaacacaa atcataaacccttcacaacagctaactctaaatagatcacagaaactacaaacgacaaaa tttctagaaagtgacattagagaaaacctagatggcttgggtttggtgatgactttttag GTACAACACCAAAGGCAACATCTATGAAGGAAACAATAGGCTGGACTTCATTAAAATTAA AAACTGCTCTGCAAAAGATAAAGCCAAGAGGCTGAAAAGACAG gtcatagactgggagaatatgtttgcaaaagacacatcttataaagggtcattatctaaa atcaataaagactcttaaagctcaacaataagaaaatgatctgattttttaaatgggcaa aataatttaagagattcctcacccaagaagatatacagatggcaaataagcatatgaaaa Exon 4 + 5666 5750 0 Initial 85 49 Marginal aaaagggcaagagtaagtctttaacttatcaataataacagtgaaagtaaatgaactaaa ctctccaacaaaagattaaaaaacaagacccaccagtctgttgcctgcaagaaacacact tcacctataaagacacacagtggctgaaaataaagttatggaaaaagatattccatgcaa ATGGAAAACCCAAAAAAGAGCAGGAGGCCCTATACTTACGTCAAACAAAATAAATTTCAA GACAAAAACTATAATAAGAGAAAAA gtaggtaattatataatgataaaggggttaattcagcaagatgatataacaattgtaagt acatatgcacccaacactgaagcacccagatatataaaatattattagaactgaagagag agatagaccccaatacaataatagctggagacttaacaccccaccttcagcactggacag Exon 5 + 15289 15384 0 Terminal 96 74 Good atagggctgagcgtggattcacgtcagctgggctaaagccagagccggtgctttggcttt atccaattgtgttaggactctgtgctactgatcaatgagctatcgatgaatatcagaaaa tcgattgattaaggacacctgacagtgaggtcttaggagtcacttttcctcttggtacag ATGAATACCTACAACAGAGAGAAGGACAAAGCTGTCCTGCAGTGCCGGGCTCACCTGCGC CACCGCCTGCAGCCTTTGCTTCCTGACTCAGCCTAA ctcccaatgtcagaataaatgcaggagagggcagtttggtgataaaaggagaggaactat acttggaaatgatatttttctgcatatttagaaccaaaaaccccactggttcattgatct ctgtgagtaaagggttaataaagctccctttctggaattgaatctgacctctgctcacct Exon 6 + 19221 19284 0 Initial 64 45 Marginal gggacgtgttggcagtggggggaggggaggggccgatagccttgcagcctcttgcgggcc cagggctgtccgctctccgtaccactcacatggccaccctgagggcagtgaacccggggc cgtgaagctgctctggtgtgtcctgaaaaggcctttccataggagcgagaggtggccgta ATGGCTGATGGGTCTGGAACGCATGGTCCCGCAGAGAGGCACGGCTCCACGGCGCCCCCA AAAT gtgagcccctccattcactcctgtcattcccgcttgtcggggccgggtcactgaactccc aggcccgcttgggctgccccccgctccctgaagactccgtggcagagggctggagtgcag ggaggagatggccccagcagtggggggtctggaaacatctcccttcatcatctttggggt Exon 7 + 25304 25497 1 Terminal 194 77 Good tcccgcggtcctgggtcatccacctgctggcctcactctgcccacgcggccaggtcccac cggcccctgagctcaacagaccaaagctggcccgaccccacccccaagaagaatgaaaca atttttttttacctcttgcagaaaagtaaaagatcatttattcattctgtttctagatag CAAAACTAAGTGTCAAAAGCACCTTCTGCACACAGTCTGCACACACTGGCCGGTGGTCCT GTTCCCGCAAGGTTGAGCTGTGTTCCAGAGACATGGGTCCTCCGGGTGATGAGGAGCCGC TGGAGGGCCCTGAGCTGCACGTGCTAATGATTAACGCCCCGTCCGTGCTGGCCGGTTTCT CAAATGCCTCCTGA cgattgcgcacagccggacatcatttgtactgagagacaaaaggaaatcactgaggcttt ctgaggtgagctgggcggccgcggggggactggactcacacctgctaacggccagtccac aggacctgcccagaggctcggacacacagctgaagtcacatcccacggggagcatcctca --------------------------------------------------------------------------------