-------------------------------------------------------------------------------- GrailEXP v3.31 [March, 2002] http://compbio.ornl.gov/grailexp/ Authors: Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and Edward C. Uberbacher, 1996-2001 Reference: "Automated Gene Identification in Large-Scale Genomic Sequences", Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4, Number 3, 1997 Sequence: >GrailEXP Input Sequence (37107 bp) -------------------------------------------------------------------------------- PERCEVAL Exon Candidates (3 predicted) Index Std Begin End Frm Type Len Scr Quality Exon 1 + 2731 2859 1 Internal 129 93 Excellent ttcatcattcacctagccaaaaagatgtttccttaacagcttttcttcccccttcagtgc tatacataagaggagaacagagttggggaaagactcatgcttcgagaagcagacattttc ttaaaaaaattataggcttttagatcataacaagtattttttttcttttgttccctccag CCAACATCCCATGCACCATCGTGGAGACTGGCTGGATGCCCTGTGCTCTATCAGGGCATG TCAGACCAACAGAGGGGCAAATCAGAGTGAAGAGGAAGCCAGAAGATGGGAGAGACATTT TTGAAGTGA gtaacctgcatgtataatgtgtactctcaaaactgcaaacaaattattttcctcaaatat ttcacactggtggtcaccttctaatacattcagcctaaatgatctttgtttccattaatg tttttttgagggggaggggtagttagcacctgcaaaaaaaatgtgtcctggttaacaaaa Exon 2 + 12644 12751 2 Internal 108 84 Good cctcctgagttattgtgttctatgtttcctttcaagacatggctaaggttatagaaccaa aactgcaaccctcaatagctgcctatctctggaaattaaaaaaaaaaaaaagccttttca cctcattgtgtatgaataaaaccttgtgaaataaggattttctgtttttattatttatag ATTTGATTACTTATATCAATATTCTCAGGATTCTCATGTTGCAGAGAAACTGAAGTTTAA ATACATTGTATTGCTACCCTTGAAAAAGTTCACAGAAATTGCTTGTAT gtaaaaatgcaagttcatgtaaccaaagtgcatatttgaccacatttaattgattttttt aaaaattagcttaaatagcattacatatctctcccttaatattatcactctgaattatag agttctgatgtacttttttgttttacagatttgtttttggtttcctgaaaagaggctagt Exon 3 + 15581 15672 1 Terminal 92 53 Marginal ggtagggtgaataaatgtcatgcttttccccattgtccatgttctaatcactggaaccta gaaggtagcaacagaagctacacagatgggatcaagttaaggatcttaaagtggggagat catcccggattatctgggtgggcctaatgtaaccacagggtccttataaaagggacccag GAAGGGTCAGAGAGACAGAAGATGATGTGATGACAGAAATAGAAGACAGAGAGAAAGAGA CTGAAAAATTGAAAGATGCTACTTTCAATTGA aagattgctggctttgaggatggaggaaagggtccataagccaaggattacaggaatccc tggaccttgtgaaaggcaagggaactgatttccctctacagcatccagaaagaatcggcc ttaccaacatcttgactttagcccaatgagacttgtgttagagttctgactgccaaagca --------------------------------------------------------------------------------