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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (24148 bp)
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PERCEVAL Exon Candidates (15 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1687       1936   0    Initial    250    81        Good
gatccgcccgcttcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccgg
ccctgctgcctctccttgggcctcgttttccctatctgtggaatgggtgggagggaggcc
ggccaaggggccccggcagccctgcctgttccagtgtcttctctctctcctgccaggacc
ATGGGTAGCAACAAGAGCAAGCCCAAGGATGCCAGCCAGCGGCGCCGCAGCCTGGAGCCC
GCCGAGAACGTGCACGGCGCTGGCGGGGGCGCTTTCCCCGCCTCGCAGACCCCCAGCAAG
CCAGCCTCGGCCGACGGCCACCGCGGCCCCAGCGCGGCCTTCGCCCCCGCGGCCGCCGAG
CCCAAGCTGTTCGGAGGCTTCAACTCCTCGGACACCGTCACCTCCCCGCAGAGGGCGGGC
CCGCTGGCCG
gtcagtgcgcgggcggcgcggggtcctcgcccacctggggccacggcggggaggcggcgg
ggctgtgtgcccggggtcgccccctctgcgcaggcccttcctctcgccaggggtagcgcc
cctgggtgacttgggtgtccggggggtgggggggcggccgtacacactgtgaagcgtccg

Exon  2 +       3421       3497   1   Terminal     77    52    Marginal
ttcttgagcacctactatgtgcctggctctggaaacaaaacaaagatgctggttattggc
gacttctgctcctagagcaagacaggcaccaaacagataagccagcacccagcactgccc
aaagccccggggacggacgcggacaggaagggatgctcccgctcccacacgcccttgcag
GGATGCGCAGATACACGGATGCAGTGGACACGTGCACAGGCCCATCTTCACTGAACCTGA
CTGTGTCTTTGGGCTGA
gcacttgcgtgtgggagacaaatccactcctcctgggtacagggccatcctgcccatgcc
ttccctggctgtggccccactgttctgacacaccccacccctctctgcaggtggagtgac
cacctttgtggccctctatgactatgagtctaggacggagacagacctgtccttcaagaa

Exon  3 +       3608       3707   1   Internal    100   100   Excellent
cagatacacggatgcagtggacacgtgcacaggcccatcttcactgaacctgactgtgtc
tttgggctgagcacttgcgtgtgggagacaaatccactcctcctgggtacagggccatcc
tgcccatgccttccctggctgtggccccactgttctgacacaccccacccctctctgcag
GTGGAGTGACCACCTTTGTGGCCCTCTATGACTATGAGTCTAGGACGGAGACAGACCTGT
CCTTCAAGAAAGGCGAGCGGCTCCAGATTGTCAACAACAC
gtgagtgcccccttccctattgcccctcagggctgggtggtgggacttcaaagcgggcag
gggctcatgcaggatctggcatcagggcagcacagtgcagagcccagggcagtgcgaagc
ccagggcagtgtggaggcaggcgcctgctgcactctcgccctgggcagcacctgctgttg

Exon  4 +       5563       5680   0   Internal    118    77        Good
aagttgcgttattttatttacgcatcaccatagcctcgagaaatgggaagtcttacttgc
accattttacagatgaggaaactgaggcccaaagaggtgaaataacttacccaaggtcac
atggctagtagtggcagagctggaagactaggctggccctccgacccatgatcctttcag
GAAGGCTCAGTGGAGGTGCAGCAGAGGCCACAGGAGGGAGAGGCCCGTGCAGGGGAGGGG
CGTCAGCAGGATGGCTCTGAAGTCCTGGTGGAGTCTCTACCAAGCGTCTCAGACTGGG
gtgacagctggggcagagctgtggaggcaggaagggctgggagaactttggttctgcctt
tttcacctggattcagagagtagccccatgcttgcctttttccagccctttccctccact
cttcttgtcttccagggagggtgggctgggggaggtttggccaggaggctggggctgcca

Exon  5 +      11428      11526   2   Internal     99    87        Good
gggaggagttccaggccagctggacctggcatgctgtggggactcacgctggccccacca
cctccctgggcctccctcagccactagagccctgagcacagcacctaggaggatggtggg
caccgggcttgtggctgacggctcccttctcctttcctccctccttctgtccctgctcag
AGAGGGAGACTGGTGGCTGGCCCACTCGCTCAGCACAGGACAGACAGGCTACATCCCCAG
CAACTACGTGGCGCCCTCCGACTCCATCCAGGCTGAGGA
gtgagtaccgtctctggctgcctctacccgtcgtccctggacactgccggtgcagagtgc
ctctcctgggctggggtgggaggtctggctgtccagcgccccagccatatccagggagaa
gcactgtgagtgggcagaagcctggacagtcagcaccatcctccgtcctcccacccccag

Exon  6 +      11707      11810   2   Internal    104    85        Good
gtgagtaccgtctctggctgcctctacccgtcgtccctggacactgccggtgcagagtgc
ctctcctgggctggggtgggaggtctggctgtccagcgccccagccatatccagggagaa
gcactgtgagtgggcagaagcctggacagtcagcaccatcctccgtcctcccacccccag
GTGGTATTTTGGCAAGATCACCAGACGGGAGTCAGAGCGGTTACTGCTCAATGCAGAGAA
CCCGAGAGGGACCTTCCTCGTGCGAGAAAGTGAGACCACGAAAG
gtacgagcgctcttgctggccaacggatactgagtcttctgtgagtggtttgagctgggt
gttgtggaatgagcaggagtttggtttgtggagtagggagggaagaaccttccgggtgga
ggtaatggcaggatcaaagtcagggaggtgcatttgaggaacactgagtaatccgcggtg

Exon  7 +      12248      12432   0   Internal    185    87        Good
tggaggtctgagtgtcacacagtaacaggctcgttcccagggtaggtgctgctacaatga
gccccgcttcttcctcttccccaggggtccctgggctgcactggatgctggaggctggtt
ttgccctcccccaactgcagtcctggtccctgcccctctcctgtccctcccctgagccag
AGAATGAAGACCATCCCCTTTCTCTCCAGCCCCTCTGAAAGTGGGTTGCAGGCGCCCGTC
ACCATGGCAGCCAAGCTGAGCTGCTTCCTGTGGGCCTGGGGCTCAGCGGGAGATGGGAAG
CAGAGCATCCATGTCGAGCCGTGCATTTACGAGCAGTCGTGCAGCCATGTGCGGGTGTGC
ATGCT
gtgtgtacatctgggcgtgtgtgtgtgtgcatgtggggtggaattgtctgtgtgttgctg
tgtgggaatggactgctgtggtttgtctggtgcctgagggcctagggagcgtgtacttgt
gtgagcgtgtggctactgggcatgggcatgcctgtgcgtgtatggacatgtggctggggt

Exon  8 +      13695      13844   1   Internal    150   100   Excellent
ggtcccttggccctgcctctgtggctgccccggggctggctgttgagagacagggtgggc
ctggggccccgcctgggcctcccttccctccaatgtcaggcaggcacagaacggtgtcca
gagcagcggcctgcggggggagagggcatggcggtcacggctcccctcggtgccccgcag
GTGCCTACTGCCTCTCAGTGTCTGACTTCGACAACGCCAAGGGCCTCAACGTGAAGCACT
ACAAGATCCGCAAGCTGGACAGCGGCGGCTTCTACATCACCTCCCGCACCCAGTTCAACA
GCCTGCAGCAGCTGGTGGCCTACTACTCCA
gtgagccagcctcggagggcggagggcgggcgggcaaagcctcagctgcagactctgggg
aggggccttggagcctagaagggtggggacttctgttatcctgcttctctccccacttcc
ccctcccccctcccttcctctctcctcccttttccctcctttccttgtctccttcttctt

Exon  9 +      15232      15436   1   Internal    205    98   Excellent
actgtgggcctgtgtgggggtggggctgtgtgcacacagatgtagatgcctggctttgag
ggcaccctgcgtgtcccctgaaatctgtgtgcatctggcatgtagggcgacacacactga
ggggcagggaggccccagggcagaagacccgcctaactgctcctcctgcctcctcctcag
AACACGCCGATGGCCTGTGCCACCGCCTCACCACCGTGTGCCCCACGTCCAAGCCGCAGA
CTCAGGGCCTGGCCAAGGATGCCTGGGAGATCCCTCGGGAGTCGCTGCGGCTGGAGGTCA
AGCTGGGCCAGGGCTGCTTTGGCGAGGTGTGGATGGGTAAGGCCTGGCCCCTGCCCTCGG
GAGAGGCATCCACCCCCCACCCCGT
gtggcagctccgggctcccttggtccctttgcctttagctgcctctgctggatgacgggg
ccctgttgtaaatctggagctccccagcggtggctggcaccgagttgggttgtggccacc
caagcactgtgccccggaccgtgcaaaccatagtgcctgattccaagatccgcacagggc

Exon 10 +      16383      16545   2   Terminal    163    58    Marginal
ctggtgagaggggagaggggtgagaagccagggtgtgggcacagccacaaagtgaggact
tgagcaacacctgggtgaatgcacagcgtcagccattatggtggctgcaaaactcatttc
tggcttgggtgagaggtgctgtccctgggaagggcctcacttcctccctgggtgctccag
GTCGACTCATGAAGTGCCACATGCAGATGGCCTGAGCCAGCAGGGCCACAGAGATTGGCC
TGAGCCCCAACCCTCGGACGGAGGCCCAGCGACTGGGAGGAACGGGCCCAAGGTCACACA
TCAAAGGAACCTCGAGGCCCACTGGGACAAGAACCTGGATTAA
acatgctggtctagaatgcagcttcccccagagccccacagttagaaaagcagatagtag
tgaaatgataaccacattacttactgagccctcacggtggggctggcccagtggttaaaa
tctcattcaatcctcaaacagctccacgggtaggcactatggaatccccattttccagat

Exon 11 +      17701      17827   0    Initial    127   100   Excellent
tgactgggtttgtcacatggctgtggaggccacagctgacactggcgcccaggtgggcag
atcctggatccctgtgtggtaggagttggggggctccactgagtcagcctgcatccctcc
tcaacagggacctggaacggtaccaccagggtggccatcaaaaccctgaagcctggcacg
ATGTCTCCAGAGGCCTTCCTGCAGGAGGCCCAGGTCATGAAGAAGCTGAGGCATGAGAAG
CTGGTGCAGTTGTATGCTGTGGTTTCAGAGGAGCCCATTTACATCGTCACGGAGTACATG
AGCAAGG
gtgagtcctgggcggccggggcagggggcaggggcactccggacagggcagggagcatga
gcctcatttcctctcatgtctagaatgggcatcttcaaaggtggaatgcagtagagccaa
attctctgttgcctgggccggagtgtggtggtgcaatcatagctcacttcagcctcaacc

Exon 12 +      19135      19211   1   Internal     77   100   Excellent
catcctgcttgccttttgagtgacaagcactgagtgagactttattcagagatgagttta
cgtaaaatctgctgtgctggttaaagcaaggccagccacctgggaggatgggttttggga
atcactgcatcctggcagagggacagggcaggagctggagctgggtctctctctgcccag
GGAGTTTGCTGGACTTTCTCAAGGGGGAGACAGGCAAGTACCTGCGGCTGCCTCAGCTGG
TGGACATGGCTGCTCAG
gtgagtcagcccctcccgcctccccacacccttggtcctcaagcacccagacccatctgg
tgcagccagttctggcctcttgagtgccccctccaagaagcctgccttgattgcctccac
actcactgatcttgccgcacgtatttaccaggtctgcttacaggtgccctgaggggtgat

Exon 13 +      19968      20121   0   Internal    154   100   Excellent
ccgcagagcactgctcctgctttcgatgccaacagcatttactgtgaactgacctcactt
gcctgaagaagtgtggggagggtggggaaggggtggttggctctccagccccagagtgct
ctgtggccctgggagggcatgggtggcacctgagccaggctcccacggttccgcctgcag
ATCGCCTCAGGCATGGCGTACGTGGAGCGGATGAACTACGTCCACCGGGACCTTCGTGCA
GCCAACATCCTGGTGGGAGAGAACCTGGTGTGCAAAGTGGCGGACTTTGGGCTGGCTCGG
CTCATTGAAGACAATGAGTACACGGCGCGGCAAG
gtgggcaggggctgtgtggtatgtcgcgcttggcctgggacaggtcacgtcccgctctga
gccccagttttttcctcagctgtcattcctcatggtgcttatctaacagagcggtcatga
caggaggtcagagctgccctgacctttctcgttcctgcaggtgccaaattccccatcaag

Exon 14 +      20282      20434   1   Internal    153    94   Excellent
tgagtacacggcgcggcaaggtgggcaggggctgtgtggtatgtcgcgcttggcctggga
caggtcacgtcccgctctgagccccagttttttcctcagctgtcattcctcatggtgctt
atctaacagagcggtcatgacaggaggtcagagctgccctgacctttctcgttcctgcag
GTGCCAAATTCCCCATCAAGTGGACGGCTCCAGAAGCTGCCCTCTATGGCCGCTTCACCA
TCAAGTCGGACGTGTGGTCCTTCGGGATCCTGCTGACTGAGCTCACCACAAAGGGACGGG
TGCCCTACCCTGGTAAGAAGGTCCTCATGGCCT
gtctgtggtccctgaatccctctgccctggtggccttgggcaagtcatgactcctgctgg
gcctgtttccccacccgtaaaacaaagaagttgagcgtctgatgttaggctctctcgatg
gtccatgctctcagcttcggggacaggacttatctatggtcactcccaacctgtcctagg

Exon 15 +      20704      20912   1   Terminal    209    96   Excellent
gttgagcgtctgatgttaggctctctcgatggtccatgctctcagcttcggggacaggac
ttatctatggtcactcccaacctgtcctaggcaggaagccctcgctgccctccccatcag
cttcccccaccccactttcctcaccggagccgggctccccatgcctcgctctgcccacag
GGATGGTGAACCGCGAGGTGCTGGACCAGGTGGAGCGGGGCTACCGGATGCCCTGCCCGC
CGGAGTGTCCCGAGTCCCTGCACGACCTCATGTGCCAGTGCTGGCGGAAGGAGCCTGAGG
AGCGGCCCACCTTCGAGTACCTGCAGGCCTTCCTGGAGGACTACTTCACGTCCACCGAGC
CCCAGTACCAGCCCGGGGAGAACCTCTAG
gcacaggcgggcccagaccggcttctcggcttggatcctgggctgggtggcccctgtctc
ggggcttgccccactctgcctgcctgctgttggtcctctctctgtggggctgaattgcca
ggggcgaggcccttcctctttggtggcatggaaggggcttctggacctagggtggcctga

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