-------------------------------------------------------------------------------- GrailEXP v3.31 [March, 2002] http://compbio.ornl.gov/grailexp/ Authors: Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and Edward C. Uberbacher, 1996-2001 Reference: "Automated Gene Identification in Large-Scale Genomic Sequences", Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4, Number 3, 1997 Sequence: >GrailEXP Input Sequence (33170 bp) -------------------------------------------------------------------------------- PERCEVAL Exon Candidates (8 predicted) Index Std Begin End Frm Type Len Scr Quality Exon 1 + 1250 1373 0 Initial 124 71 Good cgctcgggtcgtggagggggcggtgccgcgggatctctatggtcccgcccgcccgcgggc tagagcggccggggcggtgcgcgggcggcgcgcagggaccgctgggagcggggcgggcgc tcgcgtccctccttccctccccgactgtgcgccgcggctggctcgggttcccgggccgac ATGGGCGCCGCCGCGTGGGCACGGCCGCTGAGCGTGTCTTTCCTGCTGCTGCTTCTGCCG CTCCCGGGGATGCCTGCGGGCTCCTGGGACCCGGCCGGTTACCTGCTCTACTGCCCCTGC ATGG gtaaggcctcccaagccctctgctcagatggagaaactgaggccgggagaggaaaagcca ctcctcagatgcgcccagagacaccttcacaggtccaggagagaacctcagagcgggacg gggcatgctcttctcctctctgccttagttgcaagggcacagaggggccaacgtgtccaa Exon 2 + 3379 3500 1 Internal 122 100 Excellent acctgaagagccttggatatcagacccaagagtccagacttgttcttatgctgccagctc ccctagttctccttggtatccctgactttctacccctggctccacaacctttctgagccc tgcatgctctatgccctccatgccccaggcctcacctcacccgcaatgtaccatttccag GGCGCTTTGGGAACCAGGCCGATCACTTCTTGGGCTCTCTGGCATTTGCAAAGCTGCTAA ACCGTACCTTGGCTGTCCCTCCTTGGATTGAGTACCAGCATCACAAGCCTCCTTTCACCA AC gtgagtacttcccactgaccttggcctttctccgccctttctcagtcttgcttacttaca cttaaccctcaagtcctctgggctttacctcccactcctctgagatttccctacctccag ccagaactgtcttcactgcaataacaatgcctaacatttatttatccagcacctgttgtg Exon 3 + 8577 8772 0 Internal 196 100 Excellent atgttggccaggctggtctcgaactcctgacctcaagtgatccgcccgccttatcctccc aaagtgctgggattacaggcgtgagccactgcacctggcctggagtgtattgttttaata aatgtctaaagtagccacgggggcactgagacgggacctctgctcctccttttcctgtag CTCCATGTGTCCTACCAGAAGTACTTCAAGCTGGAGCCCCTCCAGGCTTACCATCGGGTC ATCAGCTTGGAGGATTTCATGGAGAAGCTGGCACCCACCCACTGGCCCCCTGAGAAGCGG GTGGCATACTGCTTTGAGGTGGCAGCCCAGCGAAGCCCAGATAAGAAGACGTGCCCCATG AAGGTGGGTCCTGTGG gttcgggggccctttcttcctgttccatgtcctctaggcccccaagactatgtcatggca aaatgtggggaaaagcaccagaaggacttagaatagaaagatggagatttaagtcctgtt tctggcatttgttagcgaagctgcatcaccttgggcagaagactttgcttctctgaacct Exon 4 + 8810 8868 1 Terminal 59 49 Marginal tcgggtcatcagcttggaggatttcatggagaagctggcacccacccactggccccctga gaagcgggtggcatactgctttgaggtggcagcccagcgaagcccagataagaagacgtg ccccatgaaggtgggtcctgtgggttcgggggccctttcttcctgttccatgtcctctag GCCCCCAAGACTATGTCATGGCAAAATGTGGGGAAAAGCACCAGAAGGACTTAGAATAG aaagatggagatttaagtcctgtttctggcatttgttagcgaagctgcatcaccttgggc agaagactttgcttctctgaaccttcatttctacctacaaaatagagatgccagtccctg ctctgtctcactcctaaagtgtcatgagggccaggtgaaaaagtgcttgtaaactgcaaa Exon 5 + 9462 9528 0 Initial 67 44 Marginal taatttggcaccattgtctacccacttaacttgaataccttcctgcatctcagcaggtaa atgagaggctgtcatatcttattaaaagaaatttatacatttctggcactttggaaataa acccccaagtatgtctttcggtgtatgtgctaaagtcttgggaaagtggttggaagaact ATGAAATTTGAGAAAGGAGACCTAGCTCACAGCCCCAACAGTGCCCTTACTGGCTGTGTA ACCTTGG gtaagtgtctgaccctcagtgggccttggtttccaccttgaaaatgaaggcattggatta gccaatcttgaatgtctcttgaagctctagtccttggttcaaaatccaaggtctgcttct ccccagaccctcatcagtgctgctgggtcagcaggatgtgacatgtgaacaggaaagact Exon 6 + 21609 21763 1 Internal 155 83 Good aacctctcgtgtttcttgcgtgttgcaggggcccctccgcagggtctctggggcatggtg caacaccatcctttttcccgtgggggtggcagccaggctctctgtgcgtcctctgacttc cctcattccatctcctgtctagattttctccaaaggaacatccggtgcttgccctgccag GAGCCCCAGCCCAGTTCCCCGTCCTAGAGGAACACAGGCCACTACAGAAGTACATGGTAT GGTCAGACGAAATGGTGAAGACGGGAGAGGCCCAGATTCATGCCCACCTTGTCCGGCCCT ATGTGGGCATTCATCTGCGCATTGGCTCTGACTGG gtaacttcccccttcctctctcactggctaacttggatgtgtccctgagcatggccctgg cctgtagggatcggccccgcgtcccagccagagcagagatctctcacttgttctggttcg tgggattgtgtcccatcatcccactgcagcacatatcaaaatgtaactccagagtgcctg Exon 7 + 24127 24369 0 Internal 243 100 Excellent gagtggagatcacaccactgcactccagcctgggtgacagagtgagactccgtctcaaaa aaaaaaaaaaaatgtagttaggttcttcctgtatagcctgtctttttccacttaccaggt cttgcttctggggttccagggcagttgccagtatttaaccctgttccccgctctccgtag AAGAACGCCTGTGCCATGCTGAAGGACGGGACTGCAGGCTCGCACTTCATGGCCTCTCCG CAGTGTGTGGGCTACAGCCGCAGCACAGCGGCCCCCCTCACGATGACTATGTGCCTGCCT GACCTGAAGGAGATCCAGAGGGCTGTGAAGCTCTGGGTGAGGTCGCTGGATGCCCAGTCG GTCTACGTTGCTACTGATTCCGAGAGTTATGTGCCTGAGCTCCAACAGCTCTTCAAAGGG AAG gtatgtgtgggccaagtgggagtgcagtaggaagggaatgaaaggaggagccaggatggt cccactgcccactgcatgcttcacgggctcccctacaagccttttgcctggacctaccat tcctcttcagttcctaccctccttcaaaccccagctcagaggcctcctccgtagtctttc Exon 8 + 27781 27962 0 Internal 182 96 Excellent tggggtgggcctaggcagcagctgggcaatgcttccctcagacactgaaccacatcttcc tcttctctgcccctccttttgtgtctgtaactgcagctcagggaataaggttgggggtgt ggatggcaggccttggcctgtagccaccccagcttatatgctctgtgcttcttcctgcag GTGAAGGTGGTGAGCCTGAAGCCTGAGGTGGCCCAGGTCGACCTGTACATCCTCGGCCAA GCCGACCACTTTATTGGCAACTGTGTCTCCTCCTTCACTGCCTTTGTGAAGCGGGAGCGG GACCTCCAGGGGAGGCCGTCTTCTTTCTTCGGCATGGACAGGCCCCCTAAGCTGCGGGAC GA gttctgattctggccggagcaccagaccctctgatcctggagggaccagagtctgagctg gtccttccagccaggcctggcagccagaggtgctccgggattgcaaactcctcttctcac ctgccaaagatggagaagagtgccagggacccctcaaggagggagacgctccatatccca --------------------------------------------------------------------------------