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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (8203 bp)
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PERCEVAL Exon Candidates (3 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1593       1696   0    Initial    104   100   Excellent
ccttgcagaggaggcagacacagcttcacagaggtcactcagaggggtctgagtctctct
tggggtgagtgggacagatggcaacagaaggatcttgcagagacatggcgagtgcagcca
cgactgtcctctcgcctggcctccaccccgccctctgacccctgactccttccgcacagg
ATGCGGCGGTATGCAGATGCCATCTTCACCAACAGCTACCGGAAGGTGCTGGGCCAGCTG
TCCGCCCGCAAGCTGCTCCAGGACATCATGAGCAGGCAGCAGGG
gtaagcaggagttctagtgatttcttcccacaccctgcagcagagtctgcaggagcttgt
tccctacaggggaccagggaccaattcagatctcttccttggcacagcaagtgtcatttc
tggacttcccatagcaaaagggttccagcgttaaacctcaacttacctccatgcctacca

Exon  2 +       3761       3974   2   Internal    214   100   Excellent
gtgtacacttgtacttctgtgctcttcattactatatatactgcctccctaagtgtggct
gaatctaattcagttgggtagaagagtccacaccagatattgaaataggcatagggatat
acccctgcctttccacatcctacccaaatagcaactagttctctttttctaaccacacag
AGAGAGCAACCAAGAGCGAGGAGCAAGGGCACGGCTTGGTCGTCAGGTAGACAGCATGTG
GGCAGAACAAAAGCAAATGGAATTGGAGAGCATCCTGGTGGCCCTGCTGCAGAAGCACAG
GTATGGGTGTGTGTGCATGGGTGCATCTAGGGACTTCAGGGCTTCCTACCCCGTGGTTTG
CCAGGAAAAGGAAAAAATCCACTCCTCTCTGAAG
gtatggggctctgccaaacaaaccaagaacaaggaccctcctgacagacattaagaacta
ggagagtggctgggtatggtggctcacctgtaatcccaacactttgggaggccaaggtgg
gtggatcatctgaggtcgggagttcaagaccaacctggccaacatggcaaaaccctgtct

Exon  3 +       6204       6234   0   Internal     31    61    Marginal
tgctatggctctcatcaggccccagtagggtggatggctccatggagggctaatcctaag
aatgcaggctttgttcccgcgagttaaaagccagaggcttcacggagattgaaatcacag
agcccgcagagctggcaggaagggccccgaaggctgctatagccattgttccccctccag
CTCAACTGCTGCAAATACCAGGATATCACTG
gtgagcaggaataagttcctgctttagagtgcagagtagagccatgtgacagatggcaca
cttttgcagccatcatacattgtgtccacgtaacagccctgtaaggaaactgaggctcgg
gtttagccatcttcccacccctgtaaagaccatccagtgactatgacatgccacactctg

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