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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (12962 bp)
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PERCEVAL Exon Candidates (3 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       2768       3113   0    Initial    346    75        Good
cattatcccaaacgtttgagcttcggtcggtcttacctagactcgtgagtgtgccaagcc
aggagggcatcctggaggaggcacgccagccaaatgggagaccgggccgcgggggcgcga
ggggggaggactgggcggggaactcgggtgactcacgtcggtcctgtccgcaggtcgacc
ATGGTGGCCGGGACCCGCTGTCTTCTAGCGTTGCTGCTTCCCCAGGTCCTCCTGGGCGGC
GCGGCTGGCCTCGTTCCGGAGCTGGGCCGCAGGAAGTTCGCGGCGGCGTCGTCGGGCCGC
CCCTCATCCCAGCCCTCTGACGAGGTCCTGAGCGAGTTCGAGTTGCGGCTGCTCAGCATG
TTCGGCCTGAAACAGAGACCCACCCCCAGCAGGGACGCCGTGGTGCCCCCCTACATGCTA
GACCTGTATCGCAGGCACTCAGGTCAGCCGGGCTCACCCGCCCCAGACCACCGGTTGGAG
AGGGCAGCCAGCCGAGCCAACACTGTGCGCAGCTTCCACCATGAAG
gtgaggcatggagcagggcgtgggggcggggagtcaccctgcaaagccctccaccgtggg
cagactgcagccgtccctgtagaggcagcttggccggggcaccagcggacgtttccactc
ttgcttctgtactatcgtttctgaatctgattttaactcactgcttgtgtggtgggggag

Exon  2 +       9410       9456   0    Initial     47    60    Marginal
tgctagaaatgctgaatctcaagcatctccccagacctactgaatcagagcctgcatctg
aagctttacggtgtacaagctgttttatgtgaaggctgaagtttgaaaagcactgcatta
aagcgttagtttggtataaactgccctgactgaacttggtgtgtccacttagcttgcatg
ATGACTGTTGCTTTGATGATGAAGGCTTACACGGGTAGATCCTTTGA
gtgagtgatctgacatgattctcctttgctaaggcatctagattcagtgcacaacttaca
gctgtttgtctttaggggaaatacaactgtaaaattaataaaaacatagtctcttcttat
gataacatggaacgatggcaaaatagattttgttagcacttgggtaggaattctgaatga

Exon  3 +      10886      11730   1   Terminal    845    78        Good
gggaggctccatgtttatttaaagaggaaatttttattttctggttacctacttttacat
gggttacatcaaatcccacgatgaggtttaaaaattctcatagataatcaaacgtcatta
cttggcttactgaaattcagacttttcttttttcttccctgtttttctctatcaaattag
AATCTTTGGAAGAACTACCAGAAACGAGTGGGAAAACAACCCGGAGATTCTTCTTTAATT
TAAGTTCTATCCCCACGGAGGAGTTTATCACCTCAGCAGAGCTTCAGGTTTTCCGAGAAC
AGATGCAAGATGCTTTAGGAAACAATAGCAGTTTCCATCACCGAATTAATATTTATGAAA
TCATAAAACCTGCAACAGCCAACTCGAAATTCCCCGTGACCAGACTTTTGGACACCAGGT
TGGTGAATCAGAATGCAAGCAGGTGGGAAAGTTTTGATGTCACCCCCGCTGTGATGCGGT
GGACTGCACAGGGACACGCCAACCATGGATTCGTGGTGGAAGTGGCCCACTTGGAGGAGA
AACAAGGTGTCTCCAAGAGACATGTTAGGATAAGCAGGTCTTTGCACCAAGATGAACACA
GCTGGTCACAGATAAGGCCATTGCTAGTAACTTTTGGCCATGATGGAAAAGGGCATCCTC
TCCACAAAAGAGAAAAACGTCAAGCCAAACACAAACAGCGGAAACGCCTTAAGTCCAGCT
GTAAGAGACACCCTTTGTACGTGGACTTCAGTGACGTGGGGTGGAATGACTGGATTGTGG
CTCCCCCGGGGTATCACGCCTTTTACTGCCACGGAGAATGCCCTTTTCCTCTGGCTGATC
ATCTGAACTCCACTAATCATGCCATTGTTCAGACGTTGGTCAACTCTGTTAACTCTAAGA
TTCCTAAGGCATGCTGTGTCCCGACAGAACTCAGTGCTATCTCGATGCTGTACCTTGACG
AGAATGAAAAGGTTGTATTAAAGAACTATCAGGACATGGTTGTGGAGGGTTGTGGGTGTC
GCTAG
tacagcaaaattaaatacataaatatatatatatatatatattttagaaaaaagaaaaaa
acaaacaaacaaaaaaaccccaccccagttgacactttaatatttcccaatgaagacttt
atttatggaatggaatggaaaaaaaaacagctattttgaaaatatatttatatctacgaa

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