-------------------------------------------------------------------------------- GrailEXP v3.31 [March, 2002] http://compbio.ornl.gov/grailexp/ Authors: Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and Edward C. Uberbacher, 1996-2001 Reference: "Automated Gene Identification in Large-Scale Genomic Sequences", Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4, Number 3, 1997 Sequence: >GrailEXP Input Sequence (40586 bp) -------------------------------------------------------------------------------- PERCEVAL Exon Candidates (12 predicted) Index Std Begin End Frm Type Len Scr Quality Exon 1 + 94 326 1 Terminal 233 48 Marginal aagtatggctgctgggattggccaagactgagctattgttacagatgcatactcctaagt taagttctcaatcttgtctacatattaagttagGTGGCAGTTCATCTACAAGGACTCAAATATTGAAGTATGGAGTTCTTCTCAGGTCACATT TAGCCTGTTTTAACAATGTAAAACCTAAAGCTGTAAAAACTCTGGAAGATAAGCTAGGAA ATTCCATTGTGGACATAATCGCTGGCAAAGATTTTATGATAAAGATGCCAAAAGCAATTA CAACAAAAACAAAAATTGACAAATGGGACCTACTTAAACTAAAGAGCTTCTGA acagcaaaagaaactatcaacagagaaaacaacctacagaatagaagaaaatatttgtaa gctctacatccaacaaaggcctaatattcagaatctataagaaatttaaacaaattaaca agcaaaaaaacaactccgttaaagtataataataataataagtggttaaaggacgtggac Exon 2 + 4427 4537 1 Internal 111 99 Excellent aaccttctgggaatgcagcccagtaggtctcagccttatttcacccagctcctattcaaa atggagtccctctggtttgaacacctctgacaattgtatatgagaagaatgaaataataa taaatttctcacttctatttagcagaatttttcattaaaatatcttttgttatgtttcag TGAATAACCCTATACCTTCCAATTTGAAATCAGAAGCAAAAAAGGCTGCCAAAATATTAA GAGAATTCACAGAAATAACTTCCAGAAATGGACCTGATAAGATCATTCCTG gtaggtaaataggatgagtgctgtttgtctctaaatgtctttttcctaagttgttttttg cattgttcgacactccatttcaggcagaagcctccatcaatgccaacaagtagttcagcc accttttgttccaccaccttttttctcatgactgatccagggatgctttggaaactacta Exon 3 + 6494 6774 1 Terminal 281 52 Marginal aattaaatctataattggtacattctatgttataaatcaaaagctaattggcagattatt cagggattattaatatgttagtgtccctgaatttgagtggaaatctgtaaaaatataatt gacatgtggaatatgtccattttaaaatgtgcttttgttaatatctaatattcccaatag GGGCAATAGCAACTCTAGAAGCATCGAGAACAGAATGTGAGGAAGACATTCTGCCAACAG GTGGCTGTAAAAATAAATCTGCACAACATATAATACAGCTTTCAATCTTGTTACAATATA ATTATAACCTTTTAAAATACAAAAATAAAGTACACTTAGTAGACAGCCATCCAGGATGCA ACCTTATTTTCTGTAGCTTTCTTATTAAGAACAGCTCCACAAATGTTCTGCATGCAAACT TCATGGTGTTGGATGAATTATTTCCAAGAGTCGGTTCTTAA tttaaactttgaaatggtggcataattacatgagaattttagtgttctcttgggtcatct gcaaagcttttgctctgtgtactagagccccatgtctgacttcacttccttggcagaata tttgataaaaataataataagttaaactaccttaaagttatatgttaggcttccctcgtt Exon 4 + 7698 7811 1 Internal 114 80 Good tcatgggaatagagaggcctcgtgcccatctgttgagtgactgacttttgttcattgctc ctgtgtgccccgaattcctagagataacctctgtgtacactgactctgtttaacacttgc tcgtctatccaggcacatagatcaaaatgcttaccttcccattgttttccacgttaacag CTCACGTAATTGCGAAGGCTAAAGGCCTTGCAATTCTGTCTGTGATCAAAGCCGGGTTCC TGGTGACTGCCAGAGGAGGCAGCGGGATTGTAGTGGCGCGCCTTCCAGATGGAA gtaagttggcgtctgttcactggagtagagagtcttcattctttgttctgtctgttttca tgtgaacacattgcatagcgagtaggacaggtttcctgcatatcaactaaaacttatgta ataagggctactcgactgaacgtgcagtttggtgtcagtgaacaagccacaggaaccagc Exon 5 + 9940 10004 1 Internal 65 87 Good atatttttaactttttaaaaattacatattctttttgaagatcactttaaaatcagggga aataccaagtctcattattttcaatagaagcactctttagattttagcatttttccttcc tatatttacatgtcgagggtgttttaatgttaggataacgttcgtttgtttttttattag AATGGTCTGCACCCTCAGCCATTGGGATAGCTGGCCTTGGTGGAGGATTTGAAATAGGAA TTGAG gtaagtagcttgtgcacgtccatacaactgccatatcctctgaagacacctaagatgcaa cctgtgaaaactgagaggtttcctagcgttcttattgttaccattggcacttaggaaaaa ttgtttcctttattttctcgatgaatgtctaactaaagctatctgatggttcccatttac Exon 6 + 23270 23382 0 Internal 113 100 Excellent caatattggcttcataattcatcagctcaaaataaaaatatggctcttgtctcacgttct ttcctgtctctattgatgttttgctacagtgcatatggtgtagttgagtgttagtcaaga tgaattttaaatgatatttagtcttaacgatttttaaatccatgggtttctacactttag GTATCAGACTTGGTGATAATTCTGAATTATGACCGTGCTGTAGAAGCTTTTGCAAAAGGC GGAAATCTGACCCTCGGAGGGAACTTGACTGTGGCGGTTGGGCCCTTGGGAAG gtgagttctttaaatagatgttagacagtaaaggtttaacaactgcatattttattttgc attaataggaaacttgaattaaaatgaacagatttgtacatccccagatttatacatgcc cgaaagatttgaggtcatcacaaataggaaattcacaaaacacagccagtgagataagct Exon 7 + 24313 24457 2 Internal 145 62 Marginal tttttcctctaggccacattaaaacatctaatttaggcctacagtaagtaaaacatagaa acagctgaagaaggtacagaacaaaataattcatttgagctagaaggagtgctatttaaa tagtgatcctcggcttggagctgctcacagctttgtgatgcaaaatcttgtgctttgcag GAACTTGGAAGGAAACGTGGCCCTGAGAAGCTCCGCTGCCGTCTTCACGTACTGCAAGTC AAGGGGACTCTTTGCAGGCGTGTCTTTAGAAGGGAGCTGTTTGATTGAAAGGAAAGAAAC TAATAGAAAGTCAGTTCAAGTTAAA gtgattttaattgaaagtgtgatgagaaaatagtacttcaaaagttgatataatttgcag agtacatttatatattctttttacaacatgtggttttaagtgtgtatcttacatttaaaa attaaatatacaaataatatatgctcgtagaaaatgcagaagacacatgaaaaagaaata Exon 8 + 25458 25661 0 Terminal 204 50 Marginal tacagtttgatttaaaaaaaaaaaaagaatctggaagtatcctaaaaggtaaagggaaac ttctactttaaattggcatctggctgatttttcccaaagatgcaaattaagtggctctta caaattgccactaaaatatgtgtaaaggcccagaaagagataaagagctaagactgacag CAGGACTTCTTCCAGAACCTGCAGAAGTTCCATCATTGCCAGCTTGATCGGCTGGCACTG CTGGCATTGGCCATTCAAATTCGCCACGCGTGGCAGACAGACCCGCCACTATCCGAGACA AAGCATCCAGTGTTTACCCCACCGAGTCATTCAGGAACTGAACAGCACTATTTAATAAAG CTAAATATAAACCACAAGAGGTAG aaaataggagggatggggaaaaataaggttttcagaactattcatcttataaaatcaaaa gtgatgtgttaactcctggctttattaatttgagaacagttaacaaaagaatgcttttag aaacttctggttcgagcccgttggcaggccttcccactaaagttcaactaaaccctggat Exon 9 + 26351 26573 2 Terminal 223 87 Good ggggtacatttaagacttgaacatgggatattgcttaaagttagtgtttaaaaagtagtg tatatgaagtgctatgtatgaatgattatatatacacaccgtgtgtgcgcacatgctatg tttaactctagaaaagatttgtgtatattaaaatgtttttaattttatatttcccattag ATTTTATTGTCAAGATATCCGAGCTTATGACATTTTATTTGGAGATACACCGCGGCCTGC TCAAGCCGAAGATCTTTATGAAATTCTTGATTCCTTTACTGAAAAGTATGAAAATGAAGG ACAACGAATCAATGCAAGAAAAGCAGCAAGGGAGCAGAGGAAGTCTTCTGTACCGTTTGG TTTTATGTTTCACTCAGTATTCTCAGAAAATCTCTTTCTGTAG aacattctgtccctgatatcaggttcctaagaacctactaagcctccttcgtagtttcac tgacttcacattcttgtgaaaaggtcatgctaccttgacatttcctctgtacagatttca gggaaaaacataatttgtcctctgtgattgcatttctccaaggatggaactttgttgtat Exon 10 + 32105 32259 0 Initial 155 55 Marginal accaaactttatttctaaattctgactttcataaatgtcttaggccagtggccttcacac tggtgtgtgcctgtctttaggagtacgcagagactgcaaaagggggtgtgggcacaggcc acttaagagacaccatctccagatctccagctcctggataagttctttttaaagctgaac ATGATGTGCAAGGTGTGCTCTTCGTCTTCTGTACTGTTAGAATCAGTTTTTCTGCAGTTG AAGAAGAAAAGCAAACCCCCAGACCGTTCTGCCTCTTTCTACACTACATCACCCCAGAGC GTCAGAACGGGAATCCAGTGTGAAATGTGGATGCA gttagtgaatggctcttatgcagtgtaaatccttccatgaatcagtgatttctgtttctt tgccttcaatgcaattgaagaagaacctaatagaattgtcatctgaatttataatgagaa tagtgtgtgtacttctgtgtcatacagatgtcaggtatttatcatctaccttatacttca Exon 11 + 35814 35899 0 Internal 86 88 Good agtcatttggagtttttcaaagaaaaaaactaacagggcacagcactaactggcttgtgg attgttatctgagaaagcagataggctcctggatctgctggcctcactcttgtgattttc atgtggatggagtttctccaacaacagctcaactcctgactctcttgtactcctccccag GAGGCAGAGGCATTTGTGGTCAATTGGGTGAGGAATTGGGCACAAGGAACAGTCAACACA CATCTTAGCCTCAGTAAAGGAGAAAT gtgagatcccggccccctcagaccttcagtggtggccttcccttcagctgcacctgaaaa ccacccacgttgctcctctaccctcctctctcactctgctttatcctcatttcatttgga atctgcaattcagagaaaattagaccaacacctgattgtgagggcagggaccaaaccagg Exon 12 + 37744 37795 0 Initial 52 42 Marginal gctcagttctcaaagtattttcttccttctgcaatacatggatatacacattgcattgaa gtacttgtgaaacatgtagaaatgctcctacctgtgctaattccaacttatctctgatat tgagaggatggatcaattaagcacagaaatgtaaacagccacaaagcccagggagaagaa ATGTCTGCTGAGGAAACAGCAAAATATAACTGGGCTGCAATCTTCAAGCCCA gtgagtaaagagccaggttttaaagttgaatctcctagggtttgatataagctcacatat ctgcctttctccagcatctgccatccatgaaactgtcacactatcttggccccttccagc tgctgtaacaaaacaccatagtctgggcagctcatagacaatggaattttatttctcacg --------------------------------------------------------------------------------