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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (55740 bp)
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PERCEVAL Exon Candidates (11 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1233       1288   1   Internal     56    98   Excellent
aaggcaccaaaatcctagaagtcctaggagggcgtggtgacgcaagcaggtgaacgctgg
ccgatgctgacaacccactcctgacgcgcttccggtgcgacgctgtctctccatgccagg
actgagttgtgggggagggaggcggttagcgggctttagcgccttttctggcggcggtag
ATTTGAAGCGCTTCAAAGGACCGGACCCAGAGAAGAGGAAAACTCTACCGGTGCAG
gtaagtggtatgaggctcaagttgttctggcggcgtcatttcagcagtccctgcgtacga
aagcgggaagggcctgggaagaggggcggagccggcgcggctgaccgggttgggtttacc
gtctttccctcgaggtatcggggctgcttgggcccagaggaagtccctgaggaccgcagc

Exon  2 +      18331      18447   0     Single    117    59    Marginal
agaataagactgaaaattcaggtttatcacatcatggaacttatattctagtgagagaag
atggatataaaaattgaatatcaattagcaataaatgcttggaagaaaaataaagcagaa
taagaggatgtaaagtgttaggaggatgagagctcctttcttgaatacagtagactagga
ATGGGCCTCTATAAGAAGGTGATACTTGAGCAACAAAGGGATGAACCATGTGAAGATGGT
TTGAGAGCATTCCAGGTGGAGAGAACAGCAAATGTAAAGGACCTGATGAAAGAGTAG
gctgttgggtggcagggggaacaagcaggataccaatgtagctgaaataaagttgaggaa
aatattagaagatgttaggaaatgaaagttgaggaaaatgcctagaggtgaacaggagct
aaaatatttagagccgtataattgaaattacagtagccacaagccacatgtgctttttga

Exon  3 +      20824      20900   2   Internal     77    98   Excellent
tgcaatctaatctctaaaaagaaagcactaataatccatgtgatttacctcatagaaata
aatatcaaaataaattcaaactatatttctaatattgtttcacagaattttttttccaga
aatttgtgaaagatctttgctattttagtctgcttgtctgaaactgtattttactcacag
ATTAAGTATTGGAGCCATGGGAATAAAGGTTCAACGTCCTCGATGTTTTTTTGACATTGC
CATTAACAATCAACCTG
gtaagaatattagttgacatttataaatgggtgtttaatattttaaattagtaaagaagt
ttaaccaactaccttctttttcagctggaagagttgtctttgaattattttctgatgtgt
gccccaaaacatgcgagaactttcgttgtctttgtacaggtttgttcacattttcaactg

Exon  4 +      22837      22944   1   Internal    108   100   Excellent
cattctccagaaataacgtgggtgattttttaaatgaatttttaaaaaaaaattcctgaa
aggaatgaaaatatgattttaagtctgcagggttcaagaggggcatattttacatttatt
ttgctttcatactactttgatttcctttctattaaatgtcctatttttttatctctatag
GTGAAAAGGGGACCGGGAAATCAACTCAGAAACCATTACATTATAAGAGTTGTCTCTTTC
ACAGAGTTGTCAAGGATTTTATGGTTCAAGGTGGTGACTTCAGTGAAG
gtgagacttggaaaaatcatgtattattttctgttaaatatcacagatctcaaagttaga
caagtccctagaagttttagtccaatattcttgtcactctcactccatttaatctttggt
caattagaagtactcatagaaatatgtaaaagaaggaagctcataggctgggtgcggtgg

Exon  5 +      25469      25556   1   Internal     88    57    Marginal
aaaaaaaagatgagaggggaaattgattcatatttgattctcttctttcataacctaact
ttattatctaagtaagttgtgtgtggcactaaataatacatcagatatgaatagaagtga
agatgaaatttttttggaggttatatctataatgtaactgaaaactttacttctctatag
ACGAGAGTTTCGCTGTTAAACACAACAAAGAATTTCTCTTGTCAATGGCCAACAGAGGGA
AGGATACAAATGGTTCACAGTTCTTCAT
gtaagtatttattatctgatgatttaaaacatcccatttttgggccgggcacggtggctc
atgcctgtaatcccaggactttgggaggctgaggcgggcggatcacgaggtcaggagatc
gagaccatcctggctaacacggtgaaaccccgtctctactaaaaaatacaaaaaaattag

Exon  6 +      31383      31593   2   Terminal    211    86        Good
tgctaactttgtttttctctgactttgtttttattcttctatctgatgatttccaaaaga
acaacgaaaccaactcctcatttagatgggtaaatattattttatttattttacaacctg
ttttaaattaaccttgaaataaaaagcttttatttaataattttttacttgacactttag
GCATCATGTTGTTTTTGGACAAGTAATCTCTGGTCAAGAAGTTGTAAGAGAGATTGAAAA
CCAGAAAACAGATGCAGCTAGCAAACCGTTTGCGGAGGTACGGATACTCAGTTGTGGAGA
GCTGATTCCCAAATCTAAAGGTAAAAAGGAAGTACATATTTCTGAGAATACTTACACATA
CAAAATAAGCAGAGATACTCTAAATAGTTGA
catgaaattcatactcaagctgaaagaaaaatgaggtttttgttttaaaatgtatttctg
tgcttttattttttacttttttaagttgacaaaacttgtgtatacttactgtgaacaata
tgatgttttgaagtatgtatatgttgtggaatggctaaattgagctaattaacatttatt

Exon  7 +      34992      35172   2   Terminal    181    48    Marginal
tgagatgtgttccctcaatacctagtttattgagagtttttagcatgaagagctgttgaa
ttttatcaaaggccttttccacatctattgagataattgtgtggtttttgtcactggttc
tgtttatgtgatagattacgtttattgatttatgtatgttgaaccattcttgcatcccag
AGGTGAAGCTGACTTAATCGTGGTGGATAAGCTTTCTGATGTGCTGCTGGATTTGATTTG
CCAGTATTTTATTGAGGATTTTCCCATCAATGTTCATCAGGGATATTGGCCTGAAATTTT
CTTTTTTTGTTGTGTCTCTGCCAGGCTTTGGTATCAGGATGATGCTGGCCTCATAAAATG
A
gttagggaggagtccccctttttctattgtttggaatagtttcagaaggaatggtaccag
ctcctctttgtacctctggtagaatttagctgtgaatccatctggtcctgggcttttttt
ggttggtagtctgttaattactgcctcaatttcagcacttgttattggtctattcaggga

Exon  8 +      47630      47785   2   Internal    156    68    Marginal
acatagctggatgatctaagtgctaaatactgaacttagtgagaatctgcagaaaattta
aatctccttccacaaagtttgtctaaaaattgttgatcaaaacctttttgtttttattaa
agttaagaaagaagaaaagaaaaggcataaatcatcatcatcttcctcctcctcatctag
TGACTCAGATAGCTCAAGTGATTCTCAGTCCTCTTCTGATTCCTCTGATTCCGAAAGTGC
TACTGAAGAGAAATCAAAGAAAAGAAAAAAGAAACATCGGAAAAATTCCCGAAAACACAA
GAAAGAAAAGAAAAAGCGAAAGAAAAGCAAGAAGAG
gtcttaattttacttttctaatgctagctttatattctgatttcctttctgtaaatctgt
taggattttgggtcaattatatgaaactgttaaaatagtgagaaatatagcatggagcgt
aggacttttgatattccacagtctatagattaaattttgggtacgttcattttcttttga

Exon  9 +      53211      53659   2   Internal    449    96   Excellent
gatttaactattattatttcaaatgtaatgataagtgtttgcttttactattatacataa
agttattgtcattttagttattgctgaataccttaagaaaagtagaatatcattttagct
aataatatctacagttcttttcctaataacatttccccaattctttttcttattttttag
GAGTGAGTTGAATGAAATAAAAGAAAATCAGAGAAGTCCAGTTAGAGTAAAAGAGAGAAA
AATAACAGATCACAGGAATGTATCTGAGAGTCCAAACAGAAAAAATGAAAAGGAGAAGAA
AGTTAAAGACCATAAATCTAACAGCAAAGAGAGAGACATCAGAAGAAATTCAGAAAAAGA
TGACAAGTATAAAAACAAAGTGAAGAAAAGGGCCAAATCTAAAAGTAGGAGTAAGAGCAA
AGAGAAATCAAAGAGTAAAGAAAGAGATTCAAAACATAATAGAAATGAAGAAAAGAGGAT
GAGGTCAAGGAGTAAAGGAAGGGATCATGAAAATGTTAAAGAAAAAGAAAAGCAGTCTGA
TTCTAAAGGAAAAGATCAGGAAAGGAGTAGAAGTAAAGAGAAGTCTAAACAGTTAGAATC
AAAGAGTAATGAGCATGATCACAGTAAAA
gtaaggaaaaggatagacgcgcacaatccaggagtagagaatgtgatataactaaaggta
aacacagttataatagcagaacaagagaacgaagcagaagtagggacagaagcagaagag
tgcgatcaagaacccatgacagagatcgcagcagaagcaaggagtaccatagatacagag

Exon 10 +      53727      54001   1   Internal    275    71        Good
taaagaaaaagaaaagcagtctgattctaaaggaaaagatcaggaaaggagtagaagtaa
agagaagtctaaacagttagaatcaaagagtaatgagcatgatcacagtaaaagtaagga
aaaggatagacgcgcacaatccaggagtagagaatgtgatataactaaaggtaaacacag
TTATAATAGCAGAACAAGAGAACGAAGCAGAAGTAGGGACAGAAGCAGAAGAGTGCGATC
AAGAACCCATGACAGAGATCGCAGCAGAAGCAAGGAGTACCATAGATACAGAGAACAGGA
ATACAGGAGAAGAGGACGGTCACGAAGCCGAGAGAGAAGAACACCACCAGGAAGATCAAG
AAGTAAAGATAGGAGGAGAAGGAGGAGAGACTCACGGAGCTCAGAGAGAGAAGAAAGTCA
AAGCAGAAACAAAGACAAATACAGAAACCAAGAGA
gtaagagctcacacagaaaagaaaattctgagagtgagaaaagaatgtactctaaaagtc
gtgatcataatagctcaaataacagcagggaaaaaaaggctgatagagatcaaagtccct
tctcaaaaataaaacaaagcagtcaggacaatgaattaaagtcctccatgttgaaaaata

Exon 11 +      54188      54321   0    Initial    134    86        Good
gctcacacagaaaagaaaattctgagagtgagaaaagaatgtactctaaaagtcgtgatc
ataatagctcaaataacagcagggaaaaaaaggctgatagagatcaaagtcccttctcaa
aaataaaacaaagcagtcaggacaatgaattaaagtcctccatgttgaaaaataaggagg
ATGAGAAGATCAGATCCTCAGTGGAAAAAGAAAACCAAAAATCAAAAGGTCAAGAAAATG
ACCATGTACATGAAAAAAATAAAAAATTTGATCATGAATCAAGCCCTGGAACAGATGAAG
ACAAAAGCGGATGA
gtgagttatataaacttacttccattctgtttcggattttaagtttgagagacttgctaa
tgaatctcctttatgttgttttccttttcattgtttttggattgttttatgtttgtcctt
ttttttcttaatgtggatttcattgagttgattttttgataatctgcaatctggataatt

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