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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (57871 bp)
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PERCEVAL Exon Candidates (10 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +        796        883   1   Internal     88   100   Excellent
gcgatgcgcccctgtcccccgcacccgggccgctccgggctcgcgcctcccgccccgcgg
ccccgccccctgccccaccccagtcgggaggcttagctggggccgcagcgcggcggcaac
atcactctcgctgccgctgctccgccccatccccttctgtttttctctctcattctccag
TGGCGGCGGCGGGGAAGGCGGAGGCAGAGGCAGCAGCAGCCGCGCTGGCTGCAATGAATG
ATCCCCCAGCTTGGGGGGAGGACTCCAG
gtgagcctctgccctcgggaggcccgggacccccggccgcccacgaccggcagcccacgc
tatggatccctagaggaaggaggagaagacagctcgccgcccacccccatcccattttcc
tcttcctttatctcattgttgccgaagctgtttacggcagcgctccctctgctcctgcat

Exon  2 +       1354       2970   0     Single   1617    95   Excellent
gcccggactgcagcagcgttggggccacctcccagcgtccccaccctaggaggctgcatg
cggattgaagagctgcgcctgggggctgggccggccccgctgatcccgacctagcgagca
ggatagcaggaccgcccaggctgcggaggggctcgggggcaggaaggtcagagcagcaag
ATGGCCAGTAAGACCAAGGCCAGCGAGGCCCTCAAGGTGGTGGCCCGGTGCCGCCCCCTC
AGCAGGAAGGAGGAGGCTGCTGGTCACGAGCAGATCCTGACCATGGACGTGAAACTGGGC
CAGGTGACCCTGCGGAACCCCCGCGCCGCCCCGGGGGAGCTGCCCAAGACCTTCACCTTT
GACGCCGTGTATGATGCCAGCTCCAAGCAGGCCGACCTGTATGACGAAACCGTGAGGCCC
CTGATAGACTCCGTGCTCCAGGGTTTCAATGGCACGGTGTTTGCCTATGGCCAGACGGGC
ACTGGCAAGACCTATACCATGCAGGGGACCTGGGTGGAGCCCGAGCTGCGCGGGGTCATC
CCGAATGCCTTTGAGCACATCTTCACCCACATCTCCCGCTCCCAGAACCAACAGTACCTG
GTCCGGGCCTCCTATTTGGAGATCTACCAGGAAGAGATTCGAGACCTGCTCTCCAAGGAG
CCGGGCAAGAGGCTAGAGCTGAAAGAGAACCCCGAGACTGGCGTCTACATCAAGGACCTC
TCCTCCTTCGTCACCAAGAATGTCAAGGAGATTGAGCATGTGATGAACCTGGGGAACCAG
ACCCGGGCTGTGGGCAGCACCCACATGAATGAGGTCAGCTCCCGCTCCCATGCCATCTTC
ATCATCACTGTGGAGTGCAGCGAACGTGGCTCTGATGGCCAGGACCACATCCGAGTGGGC
AAGCTCAACCTCGTGGACCTGGCTGGCAGCGAGAGGCAGAACAAGGCAGGCCCCAACACA
GCGGGAGGGGCAGCCACACCATCCTCGGGTGGCGGTGGTGGCGGTGGAGGCAGTGGTGGT
GGTGCTGGTGGAGAGAGGCCTAAGGAAGCCTCCAAAATCAACCTCTCATTATCTGCCCTG
GGCAACGTGATTGCTGCCCTGGCGGGCAACAGGAGCACCCACATTCCCTACCGGGACTCC
AAGCTGACCCGGCTGCTCCAGGACTCCCTGGGGGGGAATGCCAAGACCATCATGGTAGCC
ACACTGGGGCCAGCTTCTCACAGCTACGATGAGAGCCTCTCCACCTTGCGCTTTGCCAAC
CGAGCCAAGAACATCAAGAACAAGCCCCAGGTGAACGAGGACCCCAAGGACACACTGCTG
CGGGAATTCCAAGAGGAGATTGCCCGCCTGAAGGCCCAGCTGGAGAAGAGGGGGATGCTG
GGGAAGCGGCCCCGGAGGAAGAGCAGCCGCAGGAAGAAGGCCGTGTCCGCCCCGCCTGGG
TACCCTGAGGGCCCAGTGATTGAGGCCTGGGTGGCAGAAGAGGAGGATGACAACAACAAC
AACCACCGCCCGCCCCAGCCCATCCTGGAGTCAGCCTTGGAGAAGAACATGGAGAATTAC
CTGCAGGAACAGAAGGAGCGGCTGGAGGAGGAGAAGGCAGCCATCCAGGATGACCGCAGC
CTGGTGAGCGAGGAGAAGCAGAAGCTGCTGGAGGAGAAGGAGAAGATGCTGGAGGACCTG
CGGCGGGAACAGCAGGCCACAGAGCTGCTTGCGGCCAAGTACAAGGTAAGGGCCCCAGAG
GAGCTGGGCACTCGAGATGTCCCCGCAGGGGATCCCGGCAAGGAGGCTCTTCTTTGA
gagtctgtgacctggcctgaagtggaggttctccctcagcaccgcacactgccctcctgc
caaatgtgcccccagagcagccaggcaaattgctgtgataccgggctgccaggtacatgc
acaggcacacacacacgaagcaacgtggacaggcggtctctcaagccagtgagcttgggg

Exon  3 +       6320       6395   0    Initial     76    55    Marginal
ggtgtgcaaatgtgtgagagtttgtgattgtgatcagtgtcctgtttatcagtaatcatt
agcaatttatacttatgtagtgtctgggggagggagggtgtgggcgggaaatgctggtgg
gagcttgataacatactaggcctgtgaggtaggaggaataggtaacatcacagacccaca
ATGCACAGTGAAAACTTCAAATATTTGGTACTGCGCAGTGAAAACCCAAATATTTGTGCG
CAGTATACATACTGCA
gtgaggacaggtgaacacacgtagattggttgggagaaggcctactttattcaaatgtaa
tcatgcaagacaatttttaaatgactgctttaattttgaaattaactttttttttgagat
ggagtttcgttcttgttgctgaggctggagtgcaatggcacgatctcagctcattgcaac

Exon  4 +      26735      26928   1   Internal    194   100   Excellent
gtacccaaagcaaacagaccagttgccctagattccccgaggggcaccctctgtgcctcc
ctagtgttcctgctgacaataagagccttgtgctgggacctgagacactagaggggaaaa
ctccattctccctgaaagccacaaggccccatctgggacacatctggtgtccactcccag
AAGGACCACAGAGCAGGGAAGCAAAATCTCTCCAGCTAGCAATGTTGTGGACCCTTTGCA
AAGCCCACCTCCCAACCCCTCTGTGTCCCCAGGCCATGGAGAGCAAGCTCCTCATCGGGG
GCAGGAACATCATGGATCACACCAACGAACAGCAGAAGATGTTGGAACTGAAGAGGCAGG
AGATTGCCGAGCAG
gtagggcctccaggtgccaggtccccttggagagtgtggcctgcagctcatgtctgggag
gtgcagggccgtaaaccatggtggactctggatctctggaattacagtgctgagaatctc
agacatgccaccctgggtcccacaggtctactagcccagggtcttccctttggcaggggc

Exon  5 +      27608      27730   0   Internal    123   100   Excellent
gggaactgagaggagggttcccaggggctctgcaggattgggtgggagcagtggatgtgg
gccatgggccatggtgaagccaggtcccgagacaggcagagtgagccagtcccctgagct
ttcctggccctcccgagtatgcactgctcctttgagccacactgcccgtccttggcctag
AAACGTCGTGAGCGGGAGATGCAGCAGGAGATGATGCTCCGGGACGAGGAGACTATGGAG
CTCCGGGGCACCTACACATCCCTGCAGCAGGAGGTGGAGGTCAAAACCAAGAAACTCAAG
AAG
gtgagacgctgcagcaggaccggttaaggtgtgctggaggcccagcagtctctgcccaag
ggatgtgtgcttcagggactcctccccatttggctggaactgctgaacccctgagtgaca
tggcttggcctcgggggtgagcaacagggggaggcaggaggcgggggctgggggtggagt

Exon  6 +      28886      29004   0   Internal    119   100   Excellent
taaatagcccagcccaattcgtggtgggttgggcacagcggggagttcagaaaaggaccc
gcagcctcatcctgggctgagtcggtagactctgagcctgcagccctgcggcccaggctg
ggtgactggggcctcgttgccacaccaagcagcctctgagtggcacctgtccccacccag
CTCTACGCCAAGCTGCAGGCGGTGAAGGCGGAGATCCAGGACCAGCATGATGAGTATATC
CGCGTGCGGCAGGACCTGGAGGAGGCGCAGAACGAGCAGACCCGCGAACTCAAGCTCAA
gtagggcccgcagctcttttcatcccgggtccccacagccagccatcattactcaggcct
ctcctcccctaaggcctcatcctgactgtctcctctcccatgagtcctttaggaataaaa
tgcgtctgagggctgagggatgggcccacgtgctggagtttcttctacctcctctgcctg

Exon  7 +      31366      31480   2   Internal    115   100   Excellent
tctcctgacctcgtgatccgcccgccttggtctcccaaagtgctgggattacaggcgtga
gccaccgtgcccagccccctctgcctcttggcttgttgcttctaatccttcaaccctcac
atgcaccacgtggtctctcgctcacccattttcccatcactccttcattcctgctcccag
GTACCTAATCATCGAGAACTTCATCCCGCCGGAGGAGAAGAACAAGATCATGAACCGGCT
TTTCCTGGACTGTGAGGAGGAGCAGTGGAAGTTCCAGCCACTGGTGCCAGCCGGC
gtgtgagtctctaacccagctgtctgggctgggggacttgtgggtccactccaggtcggg
gctggtgaggggcctgaggccttgcctgcagggagacagatgttttgtggattggggaaa
agatggggaggatgccgatgggggatgaatttctcaggatctaattgtaggggtctctat

Exon  8 +      45715      45938   1   Terminal    224    47    Marginal
ttcagattcctagtctctccctaattgcatgaccttggacacaaaaggcgctgcacctcc
ctgagcctcagtcttctttgctctatccacacctccggaggttgttaagttcagatgaac
tgtgtagaagcacgttgtaaataagttgccattttcctaattttcccactcccctcttag
AGGGGATGGCTCTGCATTTCCAGCAGCGTCTGCAGCAGGACTGTCTCCTTGCTGCCACTG
CCACTGAGGCTGCCTCTCCTCACGGGCACGCCTCCCGGCATCCTGTAAGCTCAGCTGCAG
ACCCAGCTGGGGCTTCTGGAGCCTTATCTTTCCTTGTTTTCATCTATAGAGAGGGTCAGC
AGGGACCACTAATGGGGTACGGCACCTTTTTATATGCATCATAA
actaaaccacaagaatgttatttcccatcactgccagctgcagaaggcagccattgttct
gtgggcccctgcacagcttgttctgctgttcaaggacagaatgtcctaagctttgagtta
ctcggcctgtttcttctcctcttccaactgtcgccttttgacttttatccttgctcattt

Exon  9 +      51044      51070   0   Internal     27    68    Marginal
cagcactttgggaggccgaggcaggaggattacctgaggtcaggagtttgagaccagcct
ggccaagatggtgaaaccccctgtctctactaaaagttaaaaattaccggccaggcgcag
tggcctatgtctgtaatcccagaactttgggaggctgaggtgggcggatcatgaggtcag
GAGATCAAGACCATCCTGGCCAACATG
gtgaaaccccgtctctactaaaaatacaaaaattagctggatgtggtggcatgcgcctgt
aataccagctattcgggaggctgaggcaggagaatcgcttgaaccagggggtcggaagtt
gcagtgagccgaggttgtgccacagcactccagcctggtgacagcgagactccgtttcca

Exon 10 +      53194      53316   0   Internal    123    97   Excellent
aagcgaaaccacggatgagggggacaactgcactagcttcagttgtcaagctgtattaga
gcaaggagaagaaaattccagaacttgcagtctgcagggcctcctagctacctgaatgat
atttaggtcctcatgatgtcatttgctgtttgtgttccacagaaatcctttctaatatag
CCTCTTTCCTACAGCAGTAGCAGCCAGATGAAGAAGCGGCCAACATCTGCAGTGGGCTAC
AAGAGGCCTATCAGCCAGTATGCTCGGGTTGCCATGGCAATGGGGTCCCACCCCAGGTAC
AGG
gtaagaagcggagaggggagaaagagcctacgggagggaggccgggcgaggtgtctcaca
cctgtaatcccagcactgtgggaggccgaggcaggtggatcacctgaggtcaggagttcg
agaccagcctggttaacatggtgaacccctgtctctactaaaaatacaaaaattagccag

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