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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (13878 bp)
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PERCEVAL Exon Candidates (5 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       2825       2871   0    Initial     47    93   Excellent
agacaggtacatagcaaactaattcaaaggagctagaagatggagaaaatgctgaatgtg
gactaagtcattcaacaaagttttcaggaagcacaaagaggaggggctcccctcacagat
atctggattagaggctggctgagctgatggtggctggtgttctctgttgcagaagtcaag
ATGGCCAAAGTTCCAGACATGTTTGAAGACCTGAAGAACTGTTACAG
gtaaggaataagatttatctcttgtgatttaatgagggtttcaaggctcaccagaatcca
gctaggcataacagtggccagcatgggggcaggccggcagaggttgtagagatgtgtact
agtcctgaagtcagagcaggttcagagaagacccagaaaaactaagcattcagcatgtta

Exon  2 +       3226       3304   1   Internal     79    76        Good
atgttaaactgagattacattggcagggagaccgccattttagaaaaattatttttgagg
tctgctgagccctacatgaatatcagcatcaacttagacacagcctctgttgagatcaca
tgccctgatataagaatgggttttactggtccattctcaggaaaacttgatctcattcag
GAACAGGAAATGGCTCCACAGCAAGCTGGGCATGTGAACTCACATATGCAGGCAAATCTC
ACTCAGATGTAGAAGAAAG
gtaaatgaacacaaagataaaattacggaacatattaaactaacatgatgtttccattat
ctgtagtaaatactaacacaaactaggctgtcaaaattttgcctggatattttactaagt
ataaattatgaaatctgttttagtgaatacatgaaagtaatgtgtaacatataatctatt

Exon  3 +       4769       4991   0   Internal    223   100   Excellent
ggaaggaggaaggaaggtgagacaaaagggagagagggagggaagcctaatgaaacacca
gttacctaagaccagaatggagatcctcctcactacctctgttgaatacagcacctactg
aaagaactttcattccctgaccatgaacagcctctcagcttctgttttccttcctcacag
AAATCCTTCTATCATGTAAGCTATGGCCCACTCCATGAAGGCTGCATGGATCAATCTGTG
TCTCTGAGTATCTCTGAAACCTCTAAAACATCCAAGCTTACCTTCAAGGAGAGCATGGTG
GTAGTAGCAACCAACGGGAAGGTTCTGAAGAAGAGACGGTTGAGTTTAAGCCAATCCATC
ACTGATGATGACCTGGAGGCCATCGCCAATGACTCAGAGGAAG
gtaaggggtcaagcacaataatatctttcttttacagttttaagcaagtagggacagtag
aatttaggggaaaattaaacgtggagtcagaataacaagaagacaaccaagcattagtct
ggtaactatacagaggaaaattaatttttatccttctccaggagggagaaatgagcagtg

Exon  4 +       8484       8608   1   Internal    125   100   Excellent
atgtatagaattccattcctgacttccaggtatttacaccataggtggggacctaactac
acacacacacacacacacacacacacacacacacacaccatgcacacacaatctacatca
acacttgattttatacaaatacaatgaatttactttctttttggttcttctcttcaccag
TGAAATTTGACATGGGTGCTTATAAGTCATCAAAGGATGATGCTAAAATTACCGTGATTC
TAAGAATCTCAAAAACTCAATTGTATGTGACTGCCCAAGATGAAGACCAACCAGTGCTGC
TGAAG
gtcagttgtcctttgtctccaacttaccttcatttacatctcatatgtttgtaaataagc
ccaataggcagacacctctaacaaggtgacactgtcctctttccttcctaccacagcccc
cacctgcccaccccactcccattgattccagaggcgtgcctaggcaggctctatgagaaa

Exon  5 +      11328      11528   0   Terminal    201    92   Excellent
tctactaggcatgtaataaatgcttgctgaatgaacaaatgaatgaagagcctatagcat
catgttacagccatagtcctaaagtgctgtttctcatgaaggccaaatgctaagggattg
agcttcagtcctttttctaccatcttgttctctaacagaattctcttcttttcttcatag
GAGATGCCTGAGATACCCAAAACCATCACAGGTAGTGAGACCAACCTCCTCTTCTTCTGG
GAAACTCACGGCACTAAGAACTATTTCACATCAGTTGCCCATCCAAACTTGTTTATTGCC
ACAAAGCAAGACTACTGGGTGTGCTTGGCAGGGGGGCCACCCTCTATCACTGACTTTCAG
ATACTGGAAAACCAGGCGTAG
gtctggagtctcacttgtctcacttgtgcagtgttgacagttcatatgtaccatgtacat
gaagaagctaaatcctttactgttagtcatttgctgagcatgtactgagccttgtaattc
taaatgaatgtttacactctttgtaagagtggaaccaacactaacatataatgttgttat

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