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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (5326 bp)
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PERCEVAL Exon Candidates (4 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1605       2112   0    Initial    508    84        Good
ccgtctctggccaaaagagaagtgaaccaccaaaatatgggtatgaatgtgcatccttat
atacctcaagtagacagttggacagatccgaacagatcttgtcgaatagagcaacctgtt
acacagcaagtccccacttgctccttcaccaccaacattaaggaagaatccaattgctgc
ATGTATTCTGATAAGCGCAACAAACTCATTTCGGCCGAGGTCCCTTCGTACCAGAGGCTG
GTCCCTGAGTCTTGTCCCGTTGAGAACCCTGAGGTTCCCGTCCCTGGATATTTTAGACTG
AGTCAGACCTACGCCACCGGGAAAACCCAAGAGTACAATAATAGCCCCGAAGGCAGCTCC
ACTGTCATGCTCCAGCTCAACCCTCGTGGCGCGGCCAAGCCGCAGCTCTCCGCTGCCCAG
CTGCAGATGGAAAAGAAGATGAACGAGCCCGTGAGCGGCCAGGAGCCCACCAAAGTCTCC
CAGGTGGAGAGCCCCGAGGCCAAAGGCGGCCTTCCCGAAGAGAGGAGCTGCCTGGCTGAG
GTCTCCGTGTCCAGTCCCGAAGTGCAGGAGAAGGAAAGCAAAGGTCGGTATGAGCAGAGT
TGCCACCCCAGCGGGGCGCGCAGCCCGGGAACCCGGCAGAGAGGGAGTGCCGGGGTGCCC
AGCGCCGAGCCGGAGCCCGACTTGGCAG
gtgctgctccgcctggttttagaggggtgatctcagccctgagatagtccccgcttctcc
cctgctgccctggccctctccgccagtcctggccccacgctgatggcgcccgggcagagg
aaaagcttgccggttttatttttcctgagctagacctgaacacaacaaaagagcgcaaag

Exon  2 +       2266       2451   1   Internal    186    83        Good
gcgccgagccggagcccgacttggcaggtgctgctccgcctggttttagaggggtgatct
cagccctgagatagtccccgcttctcccctgctgccctggccctctccgccagtcctggc
cccacgctgatggcgcccgggcagaggaaaagcttgccggttttatttttcctgagctag
ACCTGAACACAACAAAAGAGCGCAAAGGAGACCTGCGGCTCATAAACACGACCACAGAGC
CTCTTTTCTCCTGCTCAGATTTGCAGTTCCAGTTTTGCCTTGAGCCCAATGATCATGTTA
AGGTGATCCAGGGCACCGTGTTCGTGTTCAAGTGTATGCACCCCGCATCCTGCGAGCTTG
GGGGTG
gtgaggggaaagagatggctgggctggttggtgcttgagttgggaaacagggcttactgc
ctttgctgggctaggtaaccttggctttgtttaggaaaagtgctgcagtctttgcaatcc
gtcggcaaagagggcaaaggcggagggggagagtggaacccgcattgccctccctgcaag

Exon  3 +       3383       3660   1   Terminal    278   100   Excellent
actagcattttccaaagcggcctggctgccagcagggtcacggccaagggtacatttgaa
cagtctgaagaaaaaaacaaaaacgaaaaccaaaaccaaaaccaaaacaaaaacaaaaac
aaaaacaaacaaacaaaaaacctcttgatttttttcttcttctccctttaattttgttag
AGGAAATCAAGTCTGATACACCAACCAGCAATTGGCTCACTGCAAAGAGTGGCAGAAAGA
AGAGGTGCCCTTACACTAAGCACCAAACGCTGGAATTAGAAAAAGAGTTCTTGTTCAATA
TGTACCTCACCCGCGAGCGCCGCCTAGAGATCAGTAAGAGCGTTAACCTCACCGACAGGC
AGGTCAAGATTTGGTTTCAAAACCGCCGAATGAAACTCAAGAAGATGAGCCGAGAGAACC
GGATCCGAGAACTGACCGCCAACCTCACGTTTTCTTAG
gtctgaggccggtctgaggccggtcagaggccaggattggagagggggcaccgcgttcca
gggcccagtgctggaggactgggaaagcggaaacaaaaccttcaccgctctttgtttgtt
gttttgttgtattttgttttcctgctagaatgtgactttggggtcattatgttcgtgctg

Exon  4 +       3809       3843   1   Internal     35    56    Marginal
gagaactgaccgccaacctcacgttttcttaggtctgaggccggtctgaggccggtcaga
ggccaggattggagagggggcaccgcgttccagggcccagtgctggaggactgggaaagc
ggaaacaaaaccttcaccgctctttgtttgttgttttgttgtattttgttttcctgctag
AATGTGACTTTGGGGTCATTATGTTCGTGCTGCAA
gtgatctgtaatccctatgagtatatatatatatatatatatatatatataaaaacttag
cacgtgtaatttattattttttcatcgtaatgcagggtaactattattgcgcattttcat
ttgggtcttaacttattggaactgtagagcatccatccatccatccatccagcaatgtga

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