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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (4160 bp)
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PERCEVAL Exon Candidates (4 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1325       1405   0    Initial     81    48    Marginal
agatgcaaataagcggctataaaaggggcgggaccgcggcgggccggaagccgcgaggag
cgcggacggctgggctgctgctgggcggccgcggggcagcggagggcgccggcactccgg
tccccgccgctccccgtccccgctgctcctagcccctgccgcgtccccggcggagcgggc
ATGGCGCCACCCGCGGCGCCTGGCCGGGACCGTGTGGGCCGTGAGGATGAGGACGGCTGG
GAGACGCGAGGGGACCGCAAG
gtgcgggccggggccatgggcgagcaagcgggcgggaggccgtgcggggctgggattcag
tgccccgctccccgcaggcccggaagcccctggtggagaagaagcggcgcgcgcggatca
acgagagcctgcaggagctgcggctgctgctggcgggcgccgaggtgcggcggccgggca

Exon  2 +       1483       1569   0   Internal     87   100   Excellent
ccgcgtccccggcggagcgggcatggcgccacccgcggcgcctggccgggaccgtgtggg
ccgtgaggatgaggacggctgggagacgcgaggggaccgcaaggtgcgggccggggccat
gggcgagcaagcgggcgggaggccgtgcggggctgggattcagtgccccgctccccgcag
GCCCGGAAGCCCCTGGTGGAGAAGAAGCGGCGCGCGCGGATCAACGAGAGCCTGCAGGAG
CTGCGGCTGCTGCTGGCGGGCGCCGAG
gtgcggcggccgggcaggcgccgtggggctgcggggcgggcgggcgggtccgggagcgcg
ctgccggctcaccgcccttcccgcccgcgcaggtgcaggccaagctggagaacgccgaag
tgctggagctgacggtgcggcgggtccagggtgtgctgcggggccgggcgcgcggtgagt

Exon  3 +       1662       1743   0   Internal     82   100   Excellent
ggcccggaagcccctggtggagaagaagcggcgcgcgcggatcaacgagagcctgcagga
gctgcggctgctgctggcgggcgccgaggtgcggcggccgggcaggcgccgtggggctgc
ggggcgggcgggcgggtccgggagcgcgctgccggctcaccgcccttcccgcccgcgcag
GTGCAGGCCAAGCTGGAGAACGCCGAAGTGCTGGAGCTGACGGTGCGGCGGGTCCAGGGT
GTGCTGCGGGGCCGGGCGCGCG
gtgagtggcggcggggcgggcgggggcgccggccgcgggcgcctgtaacccctgccagac
ggaggacttccctcccggcgcccctgtcctgtcggcggcgagggctcccaccggagcagg
gtgcgcccccgcgtctcctgggtgagccgcgtccccgcgggccgggtgggctgggccacg

Exon  4 +       1979       2203   1   Internal    225    88        Good
cagacggaggacttccctcccggcgcccctgtcctgtcggcggcgagggctcccaccgga
gcagggtgcgcccccgcgtctcctgggtgagccgcgtccccgcgggccgggtgggctggg
ccacgcagtcgccgctcaccgcgcgggacgcggctctctccctcccaccctcgggcccag
AGCGCGAGCAGCTGCAGGCGGAAGCGAGCGAGCGCTTCGCTGCCGGCTACATCCAGTGCA
TGCACGAGGTGCACACGTTCGTGTCCACGTGCCAGGCCATCGACGCTACCGTCGCTGCCG
AGCTCCTGAACCATCTGCTCGAGTCCATGCCGCTGCGTGAGGGCAGCAGCTTCCAGGATC
TGCTGGGGGACGCCCTGGCGGGGCCACCTAGAGCCCCTGGACGGA
gtggctggcctgcggggggcgctccgggatccccaatacccagccccccgggtcctgggg
acgacctgtgctccgacctggaggaggcccctgaggctgaactgagtcaggctcctgctg
aggggcccgacttggtgcccgcagccctgggcagcctgaccacagcccaaattgcccgga

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