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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (4662 bp)
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PERCEVAL Exon Candidates (4 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1287       1880   0    Initial    594    78        Good
ggcgcgggcgccagcgccttcctgctctgcccttgtatggtgccccggaggccggcccac
gggtacttaacccgggccgccgcggagggcgcccggagtcgaccgctcgggcagcgccac
cgccacgagagcccgggacgcgggaaagaccgaaaggaagaggaagaggcaccggtggcc
ATGGGGCTGGAGGCGGCGCGCGAGCTGGAGTGCGCGGCGCTGGGCACGCTGCTGCGGGAT
CCGCGGGAGGCGGAACGCACGCTGCTGCTGGACTGCCGCCCCTTCCTGGCCTTCTGCCGG
CGCCACGTGCGCGCCGCGCGGCCAGTGCCTTGGAACGCGCTGCTGCGGCGCCGCGCGCGC
GGCCCTCCTGCCGCCGTTCTCGCCTGCCTGCTGCCCGACCGCGCGCTGCGGACGCGCCTG
GTCCGCGGGGAGCTGGCGCGGGCCGTGGTGCTGGACGAGGGCAGTGCCTCGGTGGCGGAG
CTCCGGCCCGACAGCCCGGCTCATGTGCTGCTGGCCGCGCTGCTGCACGAGACCCGCGCG
GGGCCCACTGCCGTGTACTTCCTGCGAGGTGAGCAAGCCGGCCGCCCTTGGCCCGCCCCA
CCCGACTCCAGCCCGGCTTTCCCTGCTGATCGTGCTCTTCCCCTCCTTGCAGGAGGCTTC
GACGGCTTCCAGGGCTGCTGTCCCGATCTGTGCTCTGAGGCCCCCGCCCCTGCGCTGCCG
CCAACAGGGGACAAAACCAGCCGCTCCGACTCCAGGGCTCCTGTCTACGACCAG
gtgagtattgacccccctcccccgaacctccctctctccccgccgcggactgggcgcctc
tagggaaagagcctgccatttggggatgcgagcagtttgcccatatacacacacttttat
acgtgtgtgtgttgggggagggggtggggcatggctgctcgcgcgtgcctgtatgggtct

Exon  2 +       1759       1880   1   Internal    122   100   Excellent
tggcggagctccggcccgacagcccggctcatgtgctgctggccgcgctgctgcacgaga
cccgcgcggggcccactgccgtgtacttcctgcgaggtgagcaagccggccgcccttggc
ccgccccacccgactccagcccggctttccctgctgatcgtgctcttcccctccttgcag
GAGGCTTCGACGGCTTCCAGGGCTGCTGTCCCGATCTGTGCTCTGAGGCCCCCGCCCCTG
CGCTGCCGCCAACAGGGGACAAAACCAGCCGCTCCGACTCCAGGGCTCCTGTCTACGACC
AG
gtgagtattgacccccctcccccgaacctccctctctccccgccgcggactgggcgcctc
tagggaaagagcctgccatttggggatgcgagcagtttgcccatatacacacacttttat
acgtgtgtgtgttgggggagggggtggggcatggctgctcgcgcgtgcctgtatgggtct

Exon  3 +       2268       2487   0   Internal    220   100   Excellent
gcatgaagggaaatgtatgtcccggtgtgtcctccgcacattcctgagacctgtctcagg
tcaggaggactggctgaggagtcctcttgtctcggccagcccatggggtctccacccgct
gctgctccagctctccggggctgggctggaaaggcctcaccgcccctctgttccctccag
GGTGGCCCTGTGGAGATCTTGCCCTACCTGTTCCTGGGCAGCTGCAGTCACTCGTCAGAC
CTGCAGGGGCTGCAGGCCTGTGGCATCACAGCCGTCCTCAACGTGTCCGCCAGCTGCCCC
AACCACTTTGAGGGCCTTTTCCGCTACAAGAGTATCCCTGTGGAGGACAACCAGATGGTG
GAGATCAGTGCCTGGTTCCAGGAGGCCATAGGCTTCATTG
gtaagggggcacctctgcccagaaatcccgaggggctccagaggagaggactgggggcac
ctgtctcctgggctgtgcacattccgtctgacaccactcccccatctcccttgcagactg
ggtgaagaacagcggaggccgggtgctggtgcactgccaggcgggtatctcgcgctctgc

Exon  4 +       2604       2818   1   Terminal    215    95   Excellent
cctgtggaggacaaccagatggtggagatcagtgcctggttccaggaggccataggcttc
attggtaagggggcacctctgcccagaaatcccgaggggctccagaggagaggactgggg
gcacctgtctcctgggctgtgcacattccgtctgacaccactcccccatctcccttgcag
ACTGGGTGAAGAACAGCGGAGGCCGGGTGCTGGTGCACTGCCAGGCGGGTATCTCGCGCT
CTGCCACCATCTGTCTGGCATACCTCATGCAGAGTCGCCGTGTGCGGCTGGACGAGGCCT
TTGACTTCGTTAAGCAGCGCCGGGGGGTCATCTCCCCCAACTTCAGTTTCATGGGGCAGC
TGCTGCAGTTTGAGACCCAGGTGCTGTGTCACTGA
ggtggtgcccctctgcctgcctgccccactgtgctggcaggagctgactgtggactggtg
ggctcccctctgggccagcacagtcccctcacctctggcagggctgctacctcctcagag
tttcagaagcccccacatgggggctctaggaatgccggcatgctggtctttccgacctgg

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