--------------------------------------------------------------------------------
GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (53128 bp)
--------------------------------------------------------------------------------
PERCEVAL Exon Candidates (12 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +        945       2459   1   Internal   1515    74        Good
gcggagcactgggcgggtacccgctggcggctctcgcgcggcggcgctgctccaccttaa
gcgactgtacccccttaagggcgggcgctcaagcagcgagccccgggggcggggcctcca
atgcaaatgaggggcgtgggcaggcggggcggggcgggcggggcgctgacctgacgtcag
GCTCGCGGCCCGGGCAGTTGGCTCGGCGGCAGCGGAGCGGCCGGAGCTGCGGTGCGGACC
GGGGCCGCGCGGCGTGGCGCGGGGAGCGGCGGCGGCGGCAGAGCCAGAGCAACATGGCGC
CGGTGGGCGGGGGCGGGCGCCCGGTCGGCGGACCGGCCCGCGGGCGCCTCCTCCTGGCGG
CGCCGGTGCTGCTGGTGCTGCTGTGGGCGCTGGGGGCCCGGGGCCAGGGCAGCCCCCAGC
AGGGCACGATCGTGGGCATGAGGCTGGCGAGCTGCAACAAGTCGTGTGGGACGAACCCGG
ATGGCATCATCTTCGTGTCCGAGGGCAGCACCGTGAACCTGAGGCTGTACGGCTACAGCC
TGGGCAACATCTCCAGCAACCTGATCTCCTTCACCGAGGTGGACGATGCCGAGACCCTCC
ACAAGTCCACCAGCTGCCTCGAGCTCACCAAGGACCTGGTCGTCCAGCAGCTGGTCAACG
TGAGCCGCGGGAACACGTCCGGCGTGCTGGTGGTGCTCACCAAGTTCCTCCGGAGGAGCG
AGAGCATGAAGCTGTATGCACTGTGCACCCGGGCCCAGCCCGACGGGCCCTGGCTGAAGT
GGACGGACAAGGACTCACTGCTCTTCATGGTGGAGGAGCCTGGGAGGTTCCTGCCTCTCT
GGCTGCACATTCTCCTAATTACGGTGCTGCTGGTGCTGTCGGGCATATTTTCTGGCCTCA
ACCTCGGGCTTATGGCCCTGGACCCCATGGAGCTGCGCATCGTGCAGAACTGTGGCACCG
AGAAGGAGAGGCGCTATGCCCGCAAGATTGAGCCCATCCGGCGCAAGGGCAACTACCTTC
TCTGCTCGTTGCTCCTAGGGAACGTGCTGGTCAACACCTCCCTCACAATCCTTCTAGACA
ACCTCATCGGGTCCGGCCTCATGGCGGTGGCCTCCTCCACCATTGGCATTGTCATCTTTG
GGGAGATCCTACCTCAGGCCCTGTGCTCCCGACATGGGCTGGCTGTGGGTGCCAACACCA
TCCTTCTCACCAAATTCTTTATGCTACTCACCTTCCCCCTCAGTTTTCCCATTAGCAAGC
TCCTGGACTTTTTTCTGGGCCAGGAGATTCGCACTGTTTACAACCGGGAGAAGCTGATGG
AGATGTTGAAGGTGACGGAGCCCTATAATGACCTCGTGAAAGAGGAGCTCAATATGATCC
AGGGTGCCCTGGAACTACGGACCAAAACTGTAGAGGATATCATGACCCAGCTCCAGGACT
GCTTCATGATCCGCAGCGATGCCATCCTGGACTTCAACACCATGTCGGAGATAATGGAAA
GCGGCTATACTCGCATCCCGGTGTTCGAAGACGAGCAGTCCAATATTGTAGATATTCTCT
ACGTCAAAGACTTGGCCTTTGTGGACCCCGATGACTGCACCCCCCTCAAGACTATCACTC
GCTTCTATAACCACCCGGTGCACTTTGTCTTCCATGACACCAAGTTGGATGCCATGCTGG
AGGAGTTCAAGAAGG
gtaaggccagatgtagttcccctggttcaatttcctcttgacgcctcttttcccctggcg
tgttttgtgtctgctggctttagtgttctgtttgtgtgactctgtgtccctttgcctatc
gcttcctatgcttctgaggtgaacgattttggagcggtagacccattctcaagtgtctgc

Exon  2 +       2210       2459   0    Initial    250    93   Excellent
gacttttttctgggccaggagattcgcactgtttacaaccgggagaagctgatggagatg
ttgaaggtgacggagccctataatgacctcgtgaaagaggagctcaatatgatccagggt
gccctggaactacggaccaaaactgtagaggatatcatgacccagctccaggactgcttc
ATGATCCGCAGCGATGCCATCCTGGACTTCAACACCATGTCGGAGATAATGGAAAGCGGC
TATACTCGCATCCCGGTGTTCGAAGACGAGCAGTCCAATATTGTAGATATTCTCTACGTC
AAAGACTTGGCCTTTGTGGACCCCGATGACTGCACCCCCCTCAAGACTATCACTCGCTTC
TATAACCACCCGGTGCACTTTGTCTTCCATGACACCAAGTTGGATGCCATGCTGGAGGAG
TTCAAGAAGG
gtaaggccagatgtagttcccctggttcaatttcctcttgacgcctcttttcccctggcg
tgttttgtgtctgctggctttagtgttctgtttgtgtgactctgtgtccctttgcctatc
gcttcctatgcttctgaggtgaacgattttggagcggtagacccattctcaagtgtctgc

Exon  3 +       8886       8938   1   Terminal     53    64    Marginal
agggcagagggaggtaagtggtggtcataataatggtgtgacccgttgctgagctccttc
tccgtgcccagcattgtttacactggagcttctcacactcgactgcctggacattttgtt
gaaatgcagacttgaactcagtgggtctgggtgtggcccgagagtctgcatttctgacag
GTTCTCAGATGATGCCCATGCTGCTGGCCCTGGACCACACCAGTGTGCAGTAA
catctaggcaggcatgcaggggaaaatgcccacgtgaggctgaggagcaaggccaggaca
acgctaaaaggtttaagagtcagccaagaggccgggtgcggtggcttacgcctgtaatcc
cagcactttgggaggccgaggcgggcggatcatgaggtcaggagatcgagaccatcctgg

Exon  4 +      14074      14193   0    Initial    120    81        Good
ccatctaaaaaaaaaaaaaaaaaagttaattaaatatagaaagcttattaaaaataaata
aataaataaactgagctcaaaagaaccctctatataattatatgctaattcagatgccat
cttatctgaaccccagtgtatatagtcagggtaacagaaggcagagctcaagggagaaaa
ATGAAAGTGAAAGAGGAAATTCACCTCATTTACTTAGTTTTCCCCCCTTCCAAATTGGGG
AGAGTTAAACCCACCGTCCTGACCGCCAGCGCATCCATGTTCCGACTGCAGGAGCGTCAT

gtgagggctgccctgtgggagggggcaggggaaggaaggagcacagctctatttgccagt
cacgtgttttcatttcagcttcactggtcctctgctgcctcccaggtgtctcagggaggg
agggaagaggccaccaggtgagtctctgttcccttggagccccatcttgcctccgcaaca

Exon  5 +      23321      23512   0    Initial    192    50    Marginal
taggttgatttgcctgtggattattagctggttgccaaaaaggttcaaagaatggagcct
cacaaggccatgagtgagctgtgcctctctgtaagcaattgagcaaaggtacagcgggga
aggggttccctgccacctctggtaggggatgctggggcaggggcgagatggctgtgagcc
ATGCTTCCAGCTCTGCAGTTCCAGGAGAAAATGCCAGAGGTGCTTCTGAGAATACGGACT
GGGTGGAAAGGAAGAAGCAGTTTGCTGGAAGGGTCTGAACTCAGAAGGACGCTGATGGTG
CTGGTAGGACTGCTGGGACCCCCTGCACCTCCTGGCCACGGAGAGATCCTGCTCCCAGGG
ACCAGCGTCTGG
gtgggacacagttcactcctctctccacttcatgttctttttcttcagcagatggctcaa
gttccttgtttttctccttgctttctgacagccgtagcttctgaaacctgccatttttgg
tctcctgatgcctgatttcctaattgtcctgactgtgtcttctaggaagcattaagtctg

Exon  6 +      37096      37213   0   Internal    118   100   Excellent
tgcagtagaaacgtcaggaaagatggaaaagataaaaaccaccatgaccccatcctggtg
acttatgaccctacgtctagagttaatgttttggttgagggagtctcatgactggcctct
gggctcttgtctgacttgctgcattgtcccacagggaagtcccacctggccatcgtgcag
AAGGTAAACAACGAGGGTGAGGGTGACCCCTTCTACGAGGTCCTGGGCCTGGTCACCCTG
GAGGACGTGATCGAGGAGATCATCAAGTCGGAGATCCTGGACGAGTCCGACATGTACA
gtgagtccagccttccacagggcccaggacccctttcctgcttggatcgaaacttggtgt
ccctagctggaagggccatagtgcagggacacaggaggcctagcatccagaggcccagtg
gctgggtgccctgcactggccggggtgagcagggagcaggttgctgagagcagtgcccgg

Exon  7 +      37571      37807   1   Internal    237    99   Excellent
cggaggctgccttcaccctcggcctttgtgcctcggcgtcagcccaggaccctgccagcc
agagcctgctgctcctgcgtgggactaggggctggagagcaggagctgcggggcgggttc
cagtctcttcctaagtcctcaggggtctgtgttctcaattccacgctcttcttccggcag
CTGACAACCGAAGCCGGAAGCGGGTGTCTGAGAAGAACAAGCGTGACTTCTCTGCCTTCA
AGGATGCGGACAATGAGCTCAAAGTGAAAATCTCCCCGCAGCTCCTCCTGGCCGCTCATC
GCTTCCTAGCCACAGGTAGCATGAGGAGGACCTTCCGGTCTTGGTGGAAATACGGTCACG
GGGGAGAAGTCCTGGGTTTCCGGCTGCTTTCCCCCCATAGGACGAGGGCTGCAGCAG
gtgaggggtgcagagacaacacagccacccctggaaggggccgggtatctgctccacccc
tggggatctccctgcgattcatttgccattaatgggcggctactgcaaacttctaggaag
catccaagttactatatttaatagtttgggaaataatgactaggcactatggcttatacc

Exon  8 +      39115      39284   1   Internal    170   100   Excellent
ccagtcagaagccaagcgtgctccctccccagggaggtgcagaacgagggccggccgagc
agggcgggagtcgtctgagcacagcgtggctgctgtggttggggtggaggcacagcagtg
atcgagctttagggccacctggccagccccgtgtgaggtctcttctctctcctcctacag
AGGTCTCTCAGTTTAGCCCCTCCCTGATATCAGAGAAGATCCTGCTGCGGCTACTCAAGT
ACCCAGATGTCATTCAGGAACTCAAGTTTGACGAGCACAATAAGTACTACGCCCGCCATT
ACCTGTACACCCGAAATAAGCCGGCCGACTACTTCATCCTCATCCTGCAG
gtgagcccgctcagccctgggcctgccacctgctccccctggcactgcagcaacccccag
gccctctctcccacctgctgcggaggtgcatggcttccctgcctggggagcctgctgcct
gcccttgagccccgcctgccccacgtggccatcctctccctgagaggccactcttgatct

Exon  9 +      39610      39723   0   Internal    114   100   Excellent
tggccatcctctccctgagaggccactcttgatctcacaggtcaggcccctgagctctcc
agggctccagtaccggcccttcctcctgccccactgtcccttgttcctcactccccatcc
tgcctcatcctttgtttcctccctcacttggtctctaactccagccctgtgttttttcag
GGGAAGGTGGAGGTGGAGGCAGGGAAGGAGAACATGAAGTTTGAGACGGGCGCCTTCTCC
TACTATGGGACTATGGCCCTGACCTCGGTCCCCTCCGGTGAGTTGTTGGGCATG
gtctttgctgccctttggcccccctgcagctggggagccatggaccgacaccagaactga
gcatgggcccgagagctcatagccagctggctggggcagagggaggctggtgaggcggga
gccgccagggcctggagcgggtggtgtggaagagcagagggagctgccactttggatggg

Exon 10 +      48456      48550   0   Internal     95    60    Marginal
atgatcattgtgttgcccttgactgattggttgttgtgggaaacgagagattttgtagcc
ataaactttctaagtctgtggtttttattttctgtttggttgatttgttttggtagactt
tttaatacttgttgcacaatagttctaaacaaactaattcatttgctttaacgaagtcag
ACCTTATGCAGTCAGACCTTCTACATGCTTCTGTTTGTCCCTAAGAATGACTTCCTGTTC
CTGGGTGGGGTGTCCCTGGGCTTCCATGGGATGAG
gtgagacatgagggtgagagtgggcatcggagtggcctttggcatgacaacctctgctct
ccctgcagaccgttccccagcacaccccaccccactcagccgctcagcctccctcagtta
cccagaccgcacagacgtctcaactgcagcaaccttggcaggcagcagcaaccagtttgg

Exon 11 +      48668      48800   2   Internal    133    93   Excellent
gtttgtccctaagaatgacttcctgttcctgggtggggtgtccctgggcttccatgggat
gaggtgagacatgagggtgagagtgggcatcggagtggcctttggcatgacaacctctgc
tctccctgcagaccgttccccagcacaccccaccccactcagccgctcagcctccctcag
TTACCCAGACCGCACAGACGTCTCAACTGCAGCAACCTTGGCAGGCAGCAGCAACCAGTT
TGGCAGCTCTGTCCTGGGCCAGTACATCTCTGACTTCAGCGTCCGGGCACTCGTGGACTT
GCAGTACATCAAG
gtgagtgcctcactgccctgtctgggcagtgctatcttctgctcaggaatcagctactac
tttcatccaccaaacccagcatggtgggcccaaacccgagatgcctttttcttctggaga
tggggtcttgctctgtcgcccaggctggaatgcagtggtgtgatcatagcccacttcagc

Exon 12 +      49378      49575   0   Terminal    198    92   Excellent
ccctgagatgctttcttctcttgttcgtgcaccttgttctttgtaagggcttccagagac
gctgactggtcatgttctctctcaactcacagcctcaatcctggccctgtttctccaggc
ctggtgatagggtctgcctcccagcccctccctccatgaactcatcccttcctcatgcag
ATCACTCGGCAGCAGTACCAGAACGGGCTGCTGGCTTCTCGCATGGAGAACAGCCCTCAG
TTTCCCATAGACGGGTGCACCACCCACATGGAGAACTTGGCCGAGAAGTCTGAGCTGCCT
GTGGTGGACGAGACCACAACTCTTCTCAACGAGCGTAACTCCTTGCTGCACAAAGCCTCC
CACGAGAATGCCATCTGA
caggagggcccggggccccctgcccaccctgcgggggcctccccagtgggcccacatgaa
gagagggaacctgttagtccagaaaggatacggatagatagcctgtctgactgaacagcc
agatggcccccagcctatgggggatctggcctctgccagggacctctgagtagctctgag

--------------------------------------------------------------------------------