--------------------------------------------------------------------------------
GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (6080 bp)
--------------------------------------------------------------------------------
PERCEVAL Exon Candidates (3 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       2801       2919   1   Terminal    119   100   Excellent
ttggttctcaacgaccttacaaaggtttccaagacattgaaactcctcctctaagtggtt
tattcgtcatatacatgagattcactagatttttcacaacttaaggtagttttataatac
caatcacaggataagtttattcatgtggatccaatacctttcacttttttttttttttag
CAGCAAGCAACTTTGACTGCTGTCTTGGATACACAGACCGTATTCTTCATCCTAAATTTA
TTGTGGGCTTCACACGGCAGCTGGCCAATGAAGGCTGTGACATCAATGCTATCATGTAA
gttattaattgattttaattcagttgtatcaggaatacctagaaacttcagttttaaaaa
tgtttgcctttttagagtttcattcagaaattactgatgttttgaacataagatcttatt
ttaaagagaaagaaatgatgtggcaaagatagctttgtcttagtacatatctactttaaa

Exon  2 +       3591       3731   0    Initial    141    79        Good
tgacaattctgggactttatcttcctgccattgtactattatttgttacattgcagagaa
agagagaatcactttgattttgcattaatcttcatcagaagcattttttgtgcattttat
tttacctcatcaactgaaatgtttagtgtgtaatcaactggaatataaaatttccattgt
ATGTTCTATGAAAAACCCATTGAAAAGCTCATTAAACACAAATCAAATTTTCTGATTTTT
CAGCTTTCACACAAAGAAAAAGTTGTCTGTGTGCGCAAATCCAAAACAGACTTGGGTGAA
ATATATTGTGCGTCTCCTCAG
gtatgttacactgacatttagcctttgcaaatgtttgaggaaagaggagtgtgcaaaggg
gtgggccgtaggttttctgggattctttagtttaactattgtggaatttttaaagggaaa
atttgagttggaccacaaaaacaaagaatgcatttttccacttacagatcatcatcgtta

Exon  3 +       5839       5924   0    Initial     86    40        Poor
agggcgtctgcatcctcaggaacagcaacattgaatcatcagggaaagtatgctcaacat
cctgtgtgttgattcatcatcacacataggttcagtatgtgctgggcaccgtgccaagtg
ctagagagaagaagtgacttaaaacttaataacttgctgctagatatttaaggctgagca
ATGTGGCGAGAGGCAGGAATGAGTAAAGCAGCTCTTACAACACTTGGTGGTAAGCACTTT
AATAATGAAATCATTGGGCATCATTC
gtgagggcttccagaagaagtactatgcagttgaatcacattaagtagccaatatttgat
gtcattgacctgagaagatgacaatttcacaagattcagcccaatacttgtggtatgaag
aatcagtaggaagtagctagttggaaaagggacagca
--------------------------------------------------------------------------------