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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (44721 bp)
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PERCEVAL Exon Candidates (12 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1270       1317   0    Initial     48    80        Good
ccacccttttcgtgcaggcattcagctaaatgacgggcggagcccggcggcggcttccgg
tcgggggaaaaaagttgggccgaaggaggggccgggaagacgcaagaggaagaagagaaa
acggccgggcggcggtggctgtaggttgtgcggctgcagcggctcttccctgggcggacg
ATGGACAGCCAGGGCAGGAAGGTGGTGGTGTGCGACAACGGCACCGGG
gtaagggccgcgcgaggaggccttggcggccacagacgccggcggggacgagcagctggc
gcacgggccctcggcccccagggctgcacctccgggccctcggggcgaaggggcgcgggg
cggtgcctcccacctccgcgggcgtgggagcgagccggccgttccctggtctcccttgag

Exon  2 +      13212      13322   0   Internal    111    99   Excellent
atgccgtgaaagaagttaaaaggagatgttgcgatagattgagtggctacttcgggtgga
ctgaaagcaccaaaagtttaaaatgttatataaatgcaaagtgatatttttcagatgctg
tcttaaaatatagtaaatatcctgatgctaacccacttttattttactgtttcattccag
TTTGTGAAGTGTGGATATGCAGGCTCTAACTTTCCAGAACACATCTTCCCAGCTTTGGTT
GGAAGACCTATTATCAGATCAACCACCAAAGTGGGAAACATTGAAATCAAG
gtaatattttatttattgataaatgataatcaagacatgtgaggtgttcttataaaagta
gtttaacagttcttttaagtagttttaaaatatgttgccatgaaaagcaaaggggagggt
agaagttctcatatttttaatttatatcaacacctgaacaggggcacaaaaattgaagtt

Exon  3 +      19884      20099   0   Internal    216   100   Excellent
taaaaatgtattatccatgattaaactttctaagacattgttcttgatagaaaagatttt
ctaacttgtggaataaaaagatttattttgcaagtgtcagaaatattaaaattaattatt
cccaagttttcttaaatattatgcaaaactttgatctacagctttgacataattttctag
GATCTTATGGTTGGTGATGAGGCAAGTGAATTACGATCAATGTTAGAAGTTAACTACCCT
ATGGAAAATGGCATAGTACGAAATTGGGATGACATGAAACACCTGTGGGACTACACATTT
GGACCAGAGAAACTTAATATAGATACCAGAAATTGTAAAATCTTACTCACAGAACCTCCT
ATGAACCCAACCAAAAACAGAGAGAAGATTGTAGAG
gtgagtttttatgcaggatatgcatatgtgtatttctgtgatattatgttaaatcaaaaa
ttttcttactgttgctatggataaagagaataaaaataattgttttccttcagatcttat
taagtatctactatatgctagtcattattctaagtaggaaagtaggatagatcagtaaac

Exon  4 +      21006      21127   1   Terminal    122    66    Marginal
tagtcccagctactcaggaggctgaggcaggagaatgacgtgaacccttgaggcagagct
tgcagtgagtggagatcgtgccactgcactccagcctgggcgacagagcgagactccgtc
tcaaaaaaaaataaaaaatcataagagaaaatacatttactataccttaagtggatgtag
ATCATCATAAAGATCTTCATCGTCATTGTCTTCACACCGACGAAGAAGAGGAGGGGTTGG
TCTTGCTGTCTCGGGTGGCAGAGACAGAAGAGGTGCAAGGGGAGGCAGGAAAGATTTATT
GA
caaaaatcgtgtataagtggacctgtgtggttcaaacttgttgttattcatggatcagct
gtagatgctaaaggcaaaataaatcaggttaacggggagtgggaggttgtaattgtacat
aggttgtgagaaggtgatgtttaaacagacagggtaagtgagttagccagggtatatagg

Exon  5 +      22034      22114   1   Internal     81    75        Good
gtgagtatcccacaaggaggcaaagatagaagagttggagactttttcagtcatttaagc
aaaagataatgatggttaggattgaagtagtagtagtagagatagtgagaaattaccaga
ttataggtctgttttgaaggtagggctataaatgatacggttcaacaaagaagagggtag
ACAGTGGTGAAAAGGCCAAGGACCAGAGAGATAGGAGGAGCCAGCAGAAGGAGATTGAAA
ACGTTATTGAGGCCGGGCTAG
gtggctcccagcactttgggaggccaaggcgggtggatcacttgagactaggaatttgag
accagcctggccaacatggcaaaactccgtctctactaaaaacacaaaattagctgggca
tagtggtgcacgcctgtaatcccagctacgcaggaggctgaggcaggagaattgcttgaa

Exon  6 +      24387      24459   0   Internal     73    96   Excellent
gagctctgtggcagcaggacttcaataagaaataagaggagctgatgaaaatggaagact
atttcaggtccatttgattctattttgggcaattaattcactctgtgaccatgaggaaaa
catttatttattatgtaattttctaaataccagtttttttctttctgtctgcatttacag
GTAATGTTTGAAACTTACCAGTTTTCCGGTGTATATGTAGCCATCCAGGCAGTTCTGACT
TTGTACGCTCAAG
gtaggttaagcttaactgttagaaaaaacacttcatcaaacatttattatgtatgtttta
tgtcagagaatttggtttctcaataagttataagccccagaaaactacattatttatata
ccacactttgaaatattttcagtttttaaaatttgtgaaataagattttatatacatttt

Exon  7 +      25420      25485   0    Initial     66    66    Marginal
tgcctccctctttattggaaataaaatattggccacgttgggagagctcttttttttttt
tatggtcttataaattcaacaggaacttactgagaatgtctgggcctgtcagatatgtgc
caaggagtcttttaggcacttcaggggataatccagtgggaaaagagtgtggcactggaa
ATGGGTCAAGTGTGTTTGGAGAAAGGCCAGTATGTGTGTGACCTGATGGAAGTGGTAGAA
AATAAG
gtgaggtgggtagggagggctctttgggaaataaaatgtaaattcttgcattagtcagtg
ttcctgggagtatttttgaattgatgatggtgtgaattcctccttttttttttctttttt
gcaatggaaatcctcttctttttaaaagagtacaacattcaagggctgtatatgagtttt

Exon  8 +      26053      26147   1   Internal     95    62    Marginal
catgtgcctgtaatcccagctacttgggaggctgaggcgggagaatcgcttgaacccagg
aggcagaggttgcagtgagctgagattgtgccattgcactccagcctgggcgacagagtg
agactctgtctcaaaaaaaatatgtaaataaaaataaataaaaaaagtttttttgaccag
GTATGGTGGCTCATGGCTGTAATCCCAGCACTTTGAGAAGCCAAGGTGGTCAAATTGCTG
TATCTCCAGAGTTTGAGACCAGCCTAGGCAACATA
gtgagatccctatctctataaaaagtaaaattagctgggtgtggttgcacatgcctataa
tcccagccacttgagaggctgaggtgagatgatcacttgagcccaggaggttgaggaaac
aggggaaacaaagcagcttctttgctgttcttttattatgaggtttaactgacattgcct

Exon  9 +      28905      29054   0   Internal    150    68    Marginal
aaactgaaatataaatccttttatggcggataaaatcctgcttctgaaatagtaggagct
gaggatccactgcccattctgtttgttattgatgtgacatatttaatgagcattactagc
ttttgcagagtagaactcattcagatgtattatgaacttattgctattgttttgtaccag
CTACTTCTGTTGCGAGGATACGCCTTCAACCACTCTGCTGATTTTGAAACGGTTCGCATG
ATTAAAGAAAAACTGTGTTACGTGGGATATAATATTGAGCAAGAGCAGAAACTGGCCTTA
GAAACCACAGTATTAGTTGAATCTTATACA
gtaagtgtttccagtgtataatatatatgtgttttaaagtggacagccatgattattggt
gtcagcttaaggaggttttcttagaatcagtatttttgtcttgggttgttgtaatatgta
tatgtgtgacttttaatgtctctttctacattaagtttctatttaattattttagggcac

Exon 10 +      34607      34752   0   Internal    146    88        Good
agagcagttacctaaatctatttaatttacctttttttccccaaatatattttaggaaaa
attgttgttggtaatgattttggttacagaacagatgtatttataagtactagtgttccg
gagaacactgggaaattttaatcttttgctgattagtacctgattattcttggtttctag
CTCCCAGATGGACGTATCATCAAAGTTGGGGGAGAGAGATTTGAAGCACCAGAAGCTTTA
TTTCAGCCTCACTTGATCAATGTTGAAGGAGTTGGTGTTGCTGAATTGCTTTTTAACACA
ATTCAGGCAGCTGACATTGATACCAG
gtacattagaagtggtgatttcaaagttatttatcagaaaaatcataaaaatagttttaa
agttatttatcagaaatagatggaattaaatagaatgactaagtttataaacttacttga
aataatttcagacttacggaaaggttgcaagaaaaatgcagaaaacttatctgtatcctt

Exon 11 +      38403      38535   2   Internal    133    69    Marginal
atgtaaagaggggtcgttacttcacagtagtaataacagcaaatattcagccctgtgatt
tacatgtggaattttatttaattctcccagcaaccccgaggctgacataagtaacagtaa
ccctgagataccattttcctaacctaaaactccaaatgaataaccattgtgcctttctag
ATCTGAATTCTACAAACACATTGTGCTTTCTGGAGGGTCTACTATGTATCCTGGCCTGCC
ATCACGGTTGGAACGAGAACTTAAACAGCTTTACTTAGAACGAGTTTTGAAGGGTGATGT
GGAAAAACTTTCT
gtaagtattagtaaatcaactattactaacattcttttaaaaggctatacagtagtttgt
gaatcttgacaaccaccagagggagcaagacgtcttccaaaacaaattcctactgcagtc
aagtgcatcctggaaatgatagcaagaaggaaatagttcaagataagctctggtcacctc

Exon 12 +      41924      42094   0   Terminal    171   100   Excellent
aacatgagctttgggcaaattactaaatgtttctgtacctcaggtaccaaatattacgtt
ctacttatattacaggactgttgcaagtttgagggagagcatatatttaaaaagccattt
tcataaagcagaaagcactgtgcacatgtaccatttcattatcctttctttctcctttag
AAATTTAAGATCCGCATTGAAGACCCACCCCGCAGAAAGCACATGGTATTCCTGGGTGGT
GCAGTTCTAGCGGATATCATGAAAGACAAAGACAACTTTTGGATGACCCGACAAGAGTAC
CAAGAAAAGGGTGTCCGTGTGCTAGAGAAACTTGGTGTGACTGTTCGATAA
actccaaagcttgttcccgtcatacccgtaatgctttcttttttcctttattgccaatct
ttgaactcattcaactccaggacatggaagaggcctctctctgccctttgactggaaagg
tcaagttttattctggtgtcttggggaagctttgttaaatttttgttaatgtgggtaaat

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