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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (41259 bp)
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PERCEVAL Exon Candidates (12 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1201       1267   0    Initial     67    41    Marginal
agtgggcagaacacacacgtttgtaggtgggcttgccagcaaggaatgctgggagagacg
ggcccagggcaggaggccgaggtgtccctgctccaggaaacagagtgaagacactggccc
tggcaggcagcagctgggtctaagagagctgcagcccagggtcacagacctgtgggcccc
ATGGCCGGGAAGGCGGCAGAGGAGAGAGGGCTGCCGAAAGGGGCCACTCCCCAGGATACC
TCGGTGA
gtgagcaatgggaagtcggcccaggcctggtgggcgggtaggagaaatcaaacctttctc
tcttccctcaggagccttctgtcctagcaccacccggacatcaagcagtgtgaggacatg
gccgcaggactgtttcctgcatgtcaaagggcggaggggaacagattcagggtcccagag

Exon  2 +       6654       6755   0   Internal    102    90   Excellent
tcagcactcctattttcccaaagccctgaggttccacctgtgcaatcccatctgttgcca
atttgagatttaaccacgtcggctctaagaagttgctctcacctgttggtttccttcttg
tcttctcctatgttctcagcagcttctaaaggagcccctcatctctcctgtctcccacag
GGCCTCCAGGATAGATTGTTCTCCTCTGAAAGTGACAACAGCCTGTACTTCACCTACAGT
GGCCAGCCCAACACCCTGGAGGTCAGAGACCTCAACTACCAG
gtagaggcacgcctgggttcaaggggagaggagcaggcagggacagccaggaaattcccc
gggtggaaataaaagggtgggcccaacttgcaggccctctgcccgcaaggacagagtcca
gtccacattgatgcctcacgtgtcaggtgcaataggtgtcatcaatggcatatatcagag

Exon  3 +       7329       7469   0    Initial    141    68    Marginal
attatgaacactaagaaatgaacaatgtacaatgctattaactacagactttattcagat
ttcattagttatatatatatgtgtgtgtgtgtgtgtgtatatatatatatatatatataa
ttttttttttgtaaaatgtactatccctggagcttataaaacatccagagtgcaaagaca
ATGACTGACCTTTCAGAGGCACCCAGGAACCCCCTGGTCAGATTCAAGGATCCATATTCC
CACAGCTCCCCAGGGACCCAGATGGGACATGGTGGGGTCTGGGATGGTGAACTTCAGAGG
CCTGAGTCTGGCTTCCTGTGG
gtgtgagttgggacaagccaatgagcctttctctgctctgccacttaccagctgtgtgac
cttgagcaagttgcttaactgccctgagcctcatctgtaaaacaaggattctgagcatat
ctatgttatagatttgcagtgaggattgaataaggtgatggatgttaagtgattaacaca

Exon  4 +       8302       8458   0   Internal    157    93   Excellent
ttctcagcatgggtcctgcttccgtgtttggtagaacctgggttggggcctattgtgtgt
aggtgaggacatatcctctgtggagaggggccacctggggaacgaagatgctgaacagaa
gttgctgaagccctctgaaccattcagctctctaaggaaccttctgatatctccccacag
GTGGACCTGGCCTCTCAGGTCCCTTGGTTTGAGCAGCTGGCTCAGTTCAAGATGCCCTGG
ACATCTCCCAGCTGCCAGAATTCTTGTGAGCTGGGCATCCAGAACCTAAGCTTCAAAGTG
AGAAGTGGGCAGATGCTGGCCATCATAGGGAGCTCAG
gtaccggaaaggcaaatcgctgggcaatggtttctctcctgggatacagaatggtccttt
ggacaaatggatgcttcttatggagctctttgctgactagtagaataatacagcagaatg
gctgagaacacaggttctgggtcagacagacctgggctcaaatcctggctcctccatttg

Exon  5 +      13755      13969   1   Internal    215    82        Good
catctaggtccagggactatgccacctctctaggggctggtcacatctgcacggacagag
tagtccggggtcctggagagtgtatggggagcagtggctgacagcctggcccccacagaa
gctccgctctcagggatatccctggtggctttgcaggttgtgggagagcctccttgctag
ATGTGATCACTGGCCGAGGTCACGGCGGCAAGATCAAGTCAGGCCAGATCTGGATCAATG
GGCAGCCCAGCTCGCCTCAGCTGGTGAGGAAGTGTGTGGCCCACGTGCGCCAGCACAACC
AGCTGCTCCCCAACTTGACTGTGCGAGAGACCTTGGCCTTCATTGCCCAGATGCGGCTGC
CCAGAACCTTCTCCCAGGCCCAGCGTGACAAAAGG
gtaactaactggccccagtggtgacccccaggtccaagaagctacagtgtccatgccccg
ctcctcccctgctgccttgcctcaggacccagccgcaggtcgagtttgaacaactcagct
tgccttccgccagccctgggctgcagcccaccctccaccctcctttcaaaccccacagcc

Exon  6 +      14501      14633   0   Internal    133   100   Excellent
cgggacctgtggaaagaatcaggggaaccaatgttgcagcttggaactcaagtgctggag
ctgtctcccttcactttcaaacccagccggaggagcgggcgcctttatccttggggtcac
aatgtgtccagccctgaaggaggcccctgaggtggcctcaaagctccttctggcccacag
GTGGAGGACGTGATCGCGGAGCTGCGGCTTAGGCAGTGCGCTGACACCCGCGTGGGCAAC
ATGTACGTGCGGGGGTTGTCGGGGGGTGAGCGCAGGAGAGTCAGCATTGGGGTGCAGCTC
CTGTGGAACCCAG
gtgagggcctggggggcagatgggggcagagggacctgtgcggtcccctcaggcttggct
tggtctggccagagccccaccgactcaccaggctcctctctgtgttggaaaggaatcctt
attctcgacgaacccacctctgggctcgacagcttcacagcccacaacctggtgaagacc

Exon  7 +      14725      15015   1   Internal    291    77        Good
cacccgcgtgggcaacatgtacgtgcgggggttgtcggggggtgagcgcaggagagtcag
cattggggtgcagctcctgtggaacccaggtgagggcctggggggcagatgggggcagag
ggacctgtgcggtcccctcaggcttggcttggtctggccagagccccaccgactcaccag
GCTCCTCTCTGTGTTGGAAAGGAATCCTTATTCTCGACGAACCCACCTCTGGGCTCGACA
GCTTCACAGCCCACAACCTGGTGAAGACCTTGTCCAGGCTGGCCAAAGGCAACCGGCTGG
TGCTCATCTCCCTCCACCAGCCTCGCTCTGACATCTTCAGGCTGTTTGATCTGGTCCTCC
TGATGACGTCTGGCACCCCCATCTACTTAGGGGCGGCCCAGCACATGGTCCAGTATTTCA
CAGCCATCGGCTACCCCTGTCCTCGCTACAGCAATCCTGCTGACTTCTATG
gtgagtccccaaggccagcagccagggccctggcacacagggcctccccgatgcttaaac
cctgcccaagcttgctggaaagattcaggggagaaactcccagaggtttcaggagaggag
gagcaatgatggggaagaacatggggtggtttgccaggtatcaaatgctagaaatgaggg

Exon  8 +      35941      36133   0   Internal    193   100   Excellent
cagatgctgtcatcagttttctgatttaatcctcagagccactctatgaggcaggtatta
ccatccccattttgcataggagaaaaatgaggcttatggagactgtgacattcccagggt
cacggggctggtgtatgctgttgcctcagcatctcttccttttggtttttaagtcgtcag
ATTTCCAACGACTTCCGAGACCTGCCCACCCTCCTCATCCATGGGGCGGAGGCCTGTCTG
ATGTCAATGACCATCGGCTTCCTCTATTTTGGCCATGGGAGCATCCAGCTCTCCTTCATG
GATACAGCCGCCCTCTTGTTCATGATCGGTGCTCTCATCCCTTTCAACGTCATTCTGGAT
GTCATCTCCAAAT
gtgagtgtggcccactggcatgggcaggcaggacctcagccacctccaagctgtgttcct
ctgagctcctggggagcgggtttgatttcattgtgattgtgatatataagacaataatgt
ttttaaagtttgcatgttaatattagcatacaaatgaaagtaaattaccgagtcttagct

Exon  9 +      36554      36630   1   Internal     77   100   Excellent
ctgaagagcctcatcaaacatctaaattaggatggctttactgtgcctatttaaaaaaaa
aaattagagacttgggcaatatgataactactttgaattgtattaagagagtctccaaaa
cagaagcactgtagatttattctacttcttcattctcttttcctttcccttactttttag
GTTACTCAGAGAGGGCAATGCTTTACTATGAACTGGAAGACGGGCTGTACACCACTGGTC
CATATTTCTTTGCCAAG
gtgactgggcagggttgagagcaagtgccccccacccaccagggtgggggtaagtgtgga
gaaaacgttgctacaaggaaggcttttctgaaccatggggccgtgggtcatgtgaagtca
ccgatgccaccagatgccacattttctaggggagtttcagagacttgaacttttatttta

Exon 10 +      37293      37560   0   Internal    268    82        Good
tctgcaagggggaggccagcactgagctcatgctcctgggtcccagcacaccctcctgcc
acagcctcatcatcaccaggagggaaggttgctatctgggggcactgctacttttaaacg
tttataataatggcagtgaaggtgctggcttcatatccttgcaagggctgttctttgcag
ATCCTCGGGGAGCTTCCGGAGCACTGTGCCTACATCATCATCTACGGGATGCCCACCTAC
TGGCTGGCCAACCTGAGGCCAGGCCTCCAGCCCTTCCTGCTGCACTTCCTGCTGGTGTGG
CTGGTGGTCTTCTGTTGCAGGATTATGGCCCTGGCCGCCGCGGCCCTGCTCCCCACCTTC
CACATGGCCTCCTTCTTCAGCAATGCCCTCTACAACTCCTTCTACCTCGCCGGGGGCTTC
ATGATAAACTTGAGCAGCCTGTGGACAG
gtaaggcctgcccccggggcctgggccagctttgttaggactcatgtgactggatgaagc
ctgctttcatctggagatggacacttatcacttagatccaactcgaggctggcccttctg
gaagcagaggcctttgcccactgccctggaggccaaaggaatgattccattagagattcc

Exon 11 +      38467      38669   1   Internal    203    50    Marginal
tccatgaagctgagcacgtgcagggatgcctcatcacatccctctcgagaattgctatgg
atcaaatgtgtgggtgaccccgtggcctctcagctccctcggccccagtccatgtcccca
gcaacccctctgcccttttgcctcttggtctctggtctctctcccctccttgctcatcag
AGAACTTGGGCCAGAGCCACCATGGCCCTGTCTCAGAGAGTGGGATGTGCCCTTGTGCAG
GTAAGAGAGACTGTGTGACTGTGGGGAGACCATGGGAATATGGGGAGACTGAATACGGGG
GAGACTGTGTCGATATAAAGGAGATCATGGGAATACGGGGAGACCATGAGAATAGGAGGA
GACCGTGGGAATATGGGGAGACG
gtgagaatatgggaagactgcaagaatatagggagaccatgggaatatggggagactatg
ggaatatggggagatcacatgaatatgcaggagactgtgagaatatggggagaccgtgag
aatatggggagactgtgggaatatgaggaaagtgtgaatatgggggagaccatgtcaata

Exon 12 +      39923      40060   0   Terminal    138    93   Excellent
tggtgttttgaagggctgatgaagattcagttcagcagaagaacttataaaatgcctctc
gggaacctcaccatcgcggtctcaggagataaagtaagcggggaaggcctcgggttctaa
attattggacgtccggctttccatcctcctcatgagcccactgcatgtctgtgtctccag
ATCCTCAGTGTCATGGAGCTGGACTCGTACCCTCTCTACGCCATCTACCTCATCGTCATT
GGCCTCAGCGGTGGCTTCATGGTCCTGTACTACGTGTCCTTAAGGTTCATCAAACAGAAA
CCAAGTCAAGACTGGTGA
ttcacgccagacgtctgcccgctggtgggggacctgagcagacccttcaactgcactccc
tcctcaggagccccttcctggggacagtgaggacaatgaccctacagatgctcagctaca
tccggcccagggtgctgcagtggcacagaccagccacaggatggcagtagaataaagaca

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