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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (8347 bp)
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PERCEVAL Exon Candidates (4 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1290       1503   0    Initial    214    70        Good
cgacggcttgtagccccgtcccccgacgcagcgcctctccaagtttgccccgccctgcag
gactgcagaatttcctttccggcggcgcgctgtcgtcacgcgtcccgcgcctcctcgcgc
ctgcgccgtggttggaaggtcgtccctgtgaccggcttggcggttggagcggctgtcgcc
ATGTTGTCGGTAGCATCCCGCTCAGGCCCGTTCGCGCCCGTCCTGTCGGCCACGTCCCGC
GGGGTGGCGGGCGCGCTGCGGCCCTTGGTGCAGGCCACGGTGCCCGCCACCCCGGAGCAG
CCTGTGTTGGACCTGAAGCGGCCCTTCCTCAGCCGGGAGTCGCTGAGCGGCCAGGCCGTG
CGCCGGCCTTTGGTCGCCTCCGTGGGCCTCAATG
gtgagccggggcgagggccgcgagcagggctgggggtctctcggtgcccgctcctccggc
ccccagcagggagcggccgcgggcgcgcgagcggagcctgaatcaggtcgggctgggcgg
cctccgcaactctgggcctggcccccgggctcggggcgtctttctggtggccggcctgga

Exon  2 +       1570       1688   2   Internal    119    50    Marginal
tgcccgccaccccggagcagcctgtgttggacctgaagcggcccttcctcagccgggagt
cgctgagcggccaggccgtgcgccggcctttggtcgcctccgtgggcctcaatggtgagc
cggggcgagggccgcgagcagggctgggggtctctcggtgcccgctcctccggcccccag
CAGGGAGCGGCCGCGGGCGCGCGAGCGGAGCCTGAATCAGGTCGGGCTGGGCGGCCTCCG
CAACTCTGGGCCTGGCCCCCGGGCTCGGGGCGTCTTTCTGGTGGCCGGCCTGGACTCGC
gtccgccggcttcgcctggttcctcctcggccgagttcacgagctctgtagtcccgctgt
tccagccacctctgaggggttttgttgcttgcaggtcgtttgaccttgggcgagtttcta
aacgtacttcctgtgaaatggattcatatctttatcaattttgtaggggtgtcgtgaggc

Exon  3 +       6280       6860   1   Terminal    581    90   Excellent
tgactatttctgagacccagtgagtgccatatttcacatttttagaatttgattttttac
ctgtgaatccataaagggctatttcctgatatatactcccttcgggatactcatctaatt
gtgttttttaaccttctgtttgtcttgcagtccctgcttctgtttgttattcccacacag
ACATCAAGGTGCCTGACTTCTCTGAATACCGCCGCCTTGAAGTTTTAGATAGTACGAAGT
CTTCAAGAGAAAGCAGCGAGGCTAGGAAAGGTTTCTCCTATTTGGTAACTGGAGTAACTA
CTGTGGGTGTCGCATATGCTGCCAAGAATGCCGTCACCCAGTTCGTTTCCAGCATGAGTG
CTTCTGCTGATGTGTTGGCCCTGGCGAAAATCGAAATCAAGTTATCCGATATTCCAGAAG
GCAAGAACATGGCTTTCAAATGGAGAGGCAAACCCCTGTTTGTGCGTCATAGAACCCAGA
AGGAAATTGAGCAGGAAGCTGCAGTTGAATTATCACAGTTGAGGGACCCACAGCATGATC
TAGATCGAGTAAAGAAACCTGAATGGGTTATCCTGATAGGTGTTTGCACTCATCTTGGCT
GTGTACCCATTGCAAATGCAGGAGATTTTGGTGGTTATTACTGCCCTTGCCATGGGTCAC
ACTATGATGCATCTGGCAGGATCAGATTGGGTCCTGCTCCTCTCAACCTTGAAGTCCCCA
CGTATGAGTTCACCAGTGACGATATGGTGATTGTTGGTTAA
gagacttggactcaagtcataggcttctttcagtctttatgtcacctcaggagacttatt
tgagaggaagccttctgtacttgaagttgatttgaaatatgtaagaattgatgatgtatt
tgcaaacattaatgtgaaataaattgaatttaatgttgaatactttcaggcattcactta

Exon  4 +       7787       7850   0    Initial     64    55    Marginal
gtggttcatcatgtccccaaagttcctgcatccactctatcaggaggcagaaagggagca
tctgagacctaatactgcctgcatgcagaagtggtcctgctgggtttgtttctgtagtga
tgacactttgaatgttttttcctgttgggtttacagtcactcagcacttttcactgtaag
ATGGTGTGGAACCAGACGCAGAGCACATCGGAATTCACATCCTATTCTGCCTCCAATTAC
ACAG
gtgaaacaagactaaggtccattttcccctgggagttgggagtgggctttgtcctttgag
aatcacagtcactttttgatgtgtttgtctttgctgtttagaggtggaccagtcgtgctt
tactgagtctacctgataatctcatgtacacttttttaaaatggcaaaaatggttaggtt

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