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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (12277 bp)
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PERCEVAL Exon Candidates (3 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1615       1858   0    Initial    244    92   Excellent
gctccttccacccaagcacggctggggagaggggacagggtgctggcttcccaggagagc
ttggggccagcagctgggtggagcctaaggttggggggagggggctccgctggaactcca
gcctctgattcccttccagagactctcccaaaaccgttcatctgggccgagccccatttc
ATGGTTCCAAAGGAAAAGCAAGTGACCATCTGTTGCCAGGGAAATTATGGGGCTGTTGAA
TACCAGCTGCACTTTGAAGGAAGCCTTTTTGCCGTGGACAGACCAAAACCCCCTGAGCGG
ATTAACAAAGTCAAATTCTACATCCCGGACATGAACTCCCGCATGGCAGGGCAATACAGC
TGCATCTATCGGGTTGGGGAGCTCTGGTCAGAGCCCAGCAACTTGCTGGATCTGGTGGTA
ACAG
gtaactgtccggttctctaactggagagtgatctcagtctgcatccgggatgcagcatca
tctatgaactcttccaagccccactcagacactgcttgtctcggtaggaggctggaagga
ggggtgatccccatcacaatccttgcctacaaggggttgtctgcagaccgtgtctctacg

Exon  2 +       4297       4575   1   Internal    279    72        Good
gagggtgaggcaggagaaacgcttgaacccgggaggcagaggttgcagtgagccaagatc
gtgtcactgcactccagcctgggcgacagagagagactccatctctaaagaaagaaaaaa
aaaaatagctggctgctcatcactgagtttctggtgtggtggccccaccttctctcatag
AAATGTATGACACACCCACCCTCTCGGTTCATCCTGGACCCGAAGTGATCTCGGGAGAGA
AGGTGACCTTCTACTGCCGTCTAGACACTGCAACAAGCATGTTCTTACTGCTCAAGGAGG
GAAGATCCAGCCACGTACAGCGCGGATACGGGAAGGTCCAGGCGGAGTTCCCCCTGGGCC
CTGTGACCACAGCCCACCGAGGGACATACCGATGTTTTGGCTCCTATAACAACCATGCCT
GGTCTTTCCCCAGTGAGCCAGTGAAGCTCCTGGTCACAG
gtgaggaaatgctcaattccccacacccttcgccgccatgtcctacctggagccctgagg
gatccccagagagtgatggggagggtgtccaagggacgtccacttcctgggtgcctggtt
ggtcatgtgaggaagaacaccagaagcaggaaggaggagggagcagagaaaggaatggta

Exon  3 +       5071       5126   1   Terminal     56    91   Excellent
gcaggagaatcgcttgaacccgggaggcgggggttgtagtgaaccgagatcataccaccg
cactgcaacctgggcgacagagcaagactccatctcaaaaaaaaaaaaaaaaaaaaaaag
aatggcaagaccggaggaaaccaaaaacccttacttttttttctttatctccttttccag
GCGACATTGAGAACACCAGCCTTGCACCTGAAGACCCCACCTTTCCTGGTGAGTAA
ctggtccttctaagctcagacgagcgatcagagcctcccagtgacactaaaaacgtggca
ttcattcaaaatattcatcgaggccaggcgtggtggctcacgcctgtaatcccagcactt
tgggaggccgagatggtgcatcatttgaggtcaggagtttgagaccagcctggccaacat

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