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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (29726 bp)
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PERCEVAL Exon Candidates (18 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1265       1407   0    Initial    143    82        Good
ctctttcactttgacttgccttagggatgggctgtgacactttactttttttcttttttc
ttttttttcagtcttttctccttgctcagcttcaatgtgttccggagtggggacggggtg
gctgaacctcgcaggtggcagagaggctcccctggggctgtggggctctacgtggatccg
ATGGAGCCGCTGGTGACCTGGGTGGTCCCCCTCCTCTTCCTCTTCCTGCTGTCCAGGCAG
GGCGGTGAGTCCCCTGACCCTGGCATGGCGGCTCCTCTTGCTGGGTGGAGGCACGTGTAT
GTGTGGAGAGCTGTGGGCCTGCT
gtgtgggttggtttcatctctctgtgcctcagtctttcctgctgtcaaatgggagatggg
cagtcatggcttctgggatcgaacttagacatctttcctctggtctagattttctcttct
gtgaaatgcactaaattttttccacctcccggagttcaatgagaaaaaaaactaaggaag

Exon  2 +       3707       3904   0    Initial    198    52    Marginal
gatagatggatggttgggtgaatggataatggattaatgaatgcatggatgcatggataa
atacatggatggatggatggatggatggactaatgaatacatggatggatgggtgaatgg
gtggatggtgggatggatggatggatggatggatggattaatacatggatggatggatga
ATGGACGAATGGACGGATAAATGGGTGGATGGTGGGGTGGATGCATGGATTAATACATGG
ATTGATGGATGGATGGATGGATGGATGGATGGATGGATAGATGGATGGGGGGTGGATGGA
TGGATGGATGAATACGTGGATGGATGGACGGATGGTGGGGTGGATGGATGGATGTATGAA
TACGTGGATGGATGGATG
gtggggcagatggatggatgagtagatggatgaatgaacacatggatggatagatggatg
ggtagatgcgtggatggatggatgaatacatggatggataaatacatggatggatgggta
aatgggtggatggtggggtggatggatggatggatggatggatggatggatgggtagatg

Exon  3 +       5843       5938   2   Internal     96    54    Marginal
ataggttgaggtgagagacggcaggggatgaggtaggaaggacgcggggagggtttaggc
tgaggtgacgctgaaagatgtaagcatcacaaagatttgtcttaggcacgaagacccctc
cagactctggtctgttcccaagcctacaggatctcttccaggctcggcctcgggccctag
GGACCTGAGATGCTATCGGATATCCAGTGATCGTTACGAGTGCTCCTGGCAGTATGAGGG
TCCCACAGCTGGGGTCAGCCACTTCCTGCGGTGTTG
gtgaggacccctctaccattcccaaaccctcacccaccatcccactcttgcttcaacccc
ctctggtgcccctactctcggatgcgtgatcttggctgggtcaacactccttcctgggct
tcagtttctcatctaagaagagagagttggaggattgtggtggggggttggtcagtgaag

Exon  4 +       7087       7256   2   Internal    170    98   Excellent
ggaggttgcagtgagccgagattgcgcgactgcactccagcctgggtgacagaatgaaac
tccatctccaaacaaacaaacaaacaccaaaaaaacgatgctgggatgtgatgcacaaag
tcggctgtggggtccactaggaccccagactcggcactgacaccctccttcctgctgcag
CCTTAGCTCCGGGCGCTGCTGCTACTTCGCCGCCGGCTCAGCCACCAGGCTGCAGTTCTC
CGACCAGGCTGGGGTGTCTGTGCTGTACACTGTCACACTCTGGGTGGAATCCTGGGCCAG
GAACCAGACAGAGAAGTCTCCTGAGGTGACCCTGCAGCTCTACAACTCAG
gttagcaccttgttctccccccgtccgttttttacccagagaggccatcaggctgcaagg
ctggagctagagaggattcctggcccttggcaagggacttgatactactagccattgtca
cttcacgtagtgtcacgcaaacactattgtgacaaagcagtctttcatggtccccttacc

Exon  5 +       8052       8114   0    Initial     63    43    Marginal
tggtgtggtggtgcatgcctgcaatcccagctacccaggaggctgaggcgggagaatggc
ttgaatccaggaggcagatgttgcagtgagctaagatcaagtcactgcattccagcctga
gtgacagagcaagacactgtctcaaaaaaaaagaaaaaaaagaaaaaagaaaagaaaaga
ATGAAGGAAAACATGTCATTTGCCACAACATGGACAAAGCTGGAGGACATTACGCTGAGT
GAA
gtaagccaggcacagaaacaaaaacatttcatgatctcacttacatgtataatctttttt
tcttttttcttttttttgagatggagtttcgctctgtcgcccaggctggagtgcagtggc
gcgatctcggctcactgcaagctctgcctcctgggttcacaccattctcctgcctcagcc

Exon  6 +      10433      10572   1   Internal    140    98   Excellent
ggcttgtgtataaatcttgactttttgatcataatataccaggcttagctgggacctgca
agtgtcccctaattcatatttagggattcagttgcttaccctggacagggtggattttca
gggcccattaactcacatacgtgtgggctgcccctcgccaatccctacctctgcttccag
TTAAATATGAGCCTCCTCTGGGAGACATCAAGGTGTCCAAGTTGGCCGGGCAGCTGCGTA
TGGAGTGGGAGACCCCGGATAACCAGGTTGGTGCTGAGGTGCAGTTCCGGCACCGGACAC
CCAGCAGCCCATGGAAGTTG
gtgagtttgtttcccaagtccagggtggacacgggcctctccagggcaccttcaccccca
aatcagtctcaccatctctgcatctgtccccgctcccaaccagcccccactctagcccct
gaggtggtttttttctttttctttttttttttctgagacggagccttgctctgtcgccca

Exon  7 +      11761      11938   0   Internal    178    93   Excellent
cacctgagccctgggaggttgaggcttcaataagccatgattgcaccactgcactccagc
ctagatgacagagtgagaccgtgtctcagataaataagtaaataaataactaattgtaaa
acagcaaatatttttcagcaccaaaatgcaaaacaatatatgaatatgtttttattctag
GGCGACTGCGGACCTCAGGATGATGATACTGGTGAGAATAATAATAGTAATGACAACAAC
AGCTGCAGCAAATTGGCATTAATTGAGCACCTACTGTATGCCAGGTCCAATGCTGAATTT
TTTTGTATGCCTCTTACCCTGCCCCATAGTTCAGTATTGGATTCTTTCCAAATTGCAG
gtggggaaacaaatcacgacttggagggggtgagaagcctttggccaaggtcacgaccga
agggatggccgcagccaggacttgaactgaggggcagggatggacgtgggtgatcctgga
ggccctaagaggacagggcctggcctgcttctgctgagcccccaggacccagcacgtggc

Exon  8 +      12220      12339   1   Internal    120    65    Marginal
ggacgtgggtgatcctggaggccctaagaggacagggcctggcctgcttctgctgagccc
ccaggacccagcacgtggctctgtacacagttggagctcaataagcacatgatggttaag
tgactggtgccaagtcctggacaattcttacggcctgatgttcgacctgcctctccccag
AGTCCTGCCTCTGCCCCCTGGAGATGAATGTGGCCCAGGAATTCCAGCTCCGACGACGGC
AGCTGGGGAGCCAAGGAAGTTCCTGGAGCAAGTGGAGCAGCCCCGTGTGCGTTCCCCCTG

gtaagatcactctgagtacaggaacaggggcaagcattagaaataaggcaacagccggag
gtggtggtgcacacctgtagttccagctgctcagaaggctgaggcgggaggatcacttga
ggccagtggtttgagaccagcccgggcaacatagtgagaccccatctctaaaaaataaaa

Exon  9 +      14468      14634   1   Terminal    167    45    Marginal
acatgagattacaggtggcagttatccctggggatgcaaattgtgttaatttttcttcct
tcagttttttctcttttctgcaatttggggcagcaagggattttcactttgtaaatgtgg
agaatccatcatttacaaagaaaacatccatcagtctttctctccttccaattcgtctag
TTGGTTTGGTTCTGATTGCAGAAAACCCCCCACAGCCTCAGGTGAGATTCTCGGTGGAGC
AGCTGGGCCAGGATGGGAGGAGGCGGCTGACCCTGAAAGAGCAGGTAACGGGGCTGTCAC
AGGGCTGTGGGGTGGCCTGGGATGGGGAGCAGGAGGCAAAAGCCTAG
gcgggggatgagcaagtggtagatggagggagatgagatgtagaggtggcaggaagtggg
caaattgtgggtttaactctgaaggtaatagggagccatggagtgtgtgtgtgagcagga
gaggcacatgactggactcagatgttcacagactttccctggctcctgtgtgagaaacag

Exon 10 +      15663      15792   1   Internal    130    60    Marginal
aacatttttgttttcctgaatgtcagtgggttttgtcaatttcccacctccctcaagcta
gatgtgtgcgggaggtgaatgcctgtctcacagcagctttgccagcattgaggtttatta
ttcttttaatttttgatgcatgttattggctgtggcctttgtccaagtctgtcttcatag
GCTGTGCCCTGCTGTCTGCCTATGGGATGATGAGTGTGATCAGGTACCCACAAGCTGTCT
TTCATACTCCTGACAGCCAACCCAGCTGGAGCTTCCAGAAGGCTGTCAAGGGCTGGCGCC
TGGCACGGAG
gtcacttaccgactacagctccacatgctgtcctgcccgtgtaaggccaaggccaccagg
accctgcacctggggaagatgccctatctctcgggtgctgcctacaacgtggctgtcatc
tcctcgaaccaatttggtcctggcctgaaccagacgtggcacattcctgccgacacccac

Exon 11 +      15871      15976   0    Initial    106    73        Good
gatgagtgtgatcaggtacccacaagctgtctttcatactcctgacagccaacccagctg
gagcttccagaaggctgtcaagggctggcgcctggcacggaggtcacttaccgactacag
ctccacatgctgtcctgcccgtgtaaggccaaggccaccaggaccctgcacctggggaag
ATGCCCTATCTCTCGGGTGCTGCCTACAACGTGGCTGTCATCTCCTCGAACCAATTTGGT
CCTGGCCTGAACCAGACGTGGCACATTCCTGCCGACACCCACACAG
gtgcctcctctgggtggggagggcggtatgagggcccctcagagctgagcacctactctg
agcctcagctagaccagggtgagaggagcgaggcagaaaattttaaaggagtgcctgatt
taggggtgtatcaaaaattcagtaatcagccaggcacggtggctcacacctgtaatccca

Exon 12 +      19562      19699   1   Internal    138    95   Excellent
gggatggggttgggggtgttgcatagggaagagatcttggaggaggggatattggtgcaa
gggctttgaaacatgagtaggagttttctgggggttcctggcagatggcacagccagtgc
aaaggtgcagaggtgggaacacaatctactgaatggcctggcctttgcttatccttccag
CAACCTACAGCTGGAGTCGAGAGTCTGGGGCAATGGGGCAGGAAAAGTGTTACTACATTA
CCATCTTTGCCTCTGCGCACCCCGAGAAGCTCACCTTGTGGTCTACGGTCCTGTCCACCT
ACCACTTTGGGGGCAATG
gtaagtgacccaaacctgcaggtttacattattttttctttttaaataatttaaaaaaat
agaggctgggcacagtgactcacgcatgtaatcccagcactttgggaggccaaggtgggt
ggatcacctgaggtcaggagtttgaaaccagcctggccaatgtggcgaaaccctgtctct

Exon 13 +      24078      24212   1   Internal    135   100   Excellent
tccagcctgggcgacagagcaagactccgtctcaaaaaaaaaaaaaaaaaaagaaagaaa
gagtagagattttagcaaaatgcctatgaatccccaccccacccacaggctgtggtagcc
cagcctggcctctgaggagtaaagaggtcccaggactcagggttgcctctcccactgcag
AGCATCCCGTGCAGCCCACAGAGACCCAAGTTACCCTCAGTGGCCTGCGGGCTGGTGTAG
CCTACACGGTGCAGGTGCGAGCAGACACAGCGTGGCTGAGGGGTGTCTGGAGCCAGCCCC
AGCGCTTCAGCATCG
gtgagtggagggggtaggacccagttatttacccagcatgcactgcactgcgcttcccac
aatgatcttagcagccctgccctcactctcactccctctatggctccctactgccctcag
gagaaagtagcagctcaaactgctcccattgccttctctcgcagcttcctctcacactcc

Exon 14 +      25013      25057   0   Terminal     45    96   Excellent
ggtgtggtggtgcacacctgtagtctcagctgctcaggaggctgaggtgggaggatggct
tgagaccaggagttcaaggttgcagtgagccgtgactgcaccactgcactctggcctggg
cgacggagcaagaccctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatag
AAGAAGAAGAAGGAGAAGAAAGAAGAAGAAGAGGAAGAGGAATAG
aagaagagggaggaggaggaggaggaggaggaagagaacaacacaggctctgttgtcggg
tgcatggttataagagattcagagatcaaatgatccctgttcatgccacggtgtcctttc
agttccaagagaaccaactggaacccagagaacaaaagagtcagggttggtggggggcag

Exon 15 +      25811      25907   1   Internal     97    86        Good
ccaggcctttatttcttgacagctaccgggcaggtgggttctgtggtctcccagtgagaa
gcccgtggcatgtgcaccaggatcagcagcaagttcatggagaaaccaggccctcctagc
tccttccctgaggaagaggcaggaggtagccctctgccaacccacgctctcccacctcag
AAGTGCAGGTTTCTGATTGGCTCATCTTCTTCGCCTCCCTGGGGAGCTTCCTGAGCATCC
TTCTCGTGGGCGTCCTTGGCTACCTTGGCCTGAACAG
gtaactgacacctcttaccgttaccatagcgatggtaatgatgctgggcaggggagccct
aaagtggagcttagcccgcagattgggtccttggctttgcccaggaaataattcaagggc
aagccagaggtagaagaaaacagctttattgaagcagcagttatagctccgtgactgcct

Exon 16 +      26891      26966   2   Internal     76    66    Marginal
acgtttgtaatctcagctactcaggaggctgagtcaggagaatcgattgaacccaggagg
cagaggttgcagtgagccgagatcgcgccactgcactccagcctgggcaacagagcaaga
ctccgtctccaaaaaaaaaaaaaacctcagctcctctcactggtcccctttcctccccag
GGCCGCACGGCACCTGTGCCCGCCGCTGCCCACACCCTGTGCCAGCTCCGCCATTGAGTT
CCCTGGAGGGAAGGAG
gtaaggatgccttttctaattccaagtctttttattgggtgcacatgctggacaagggtt
acgcattagctcattttattctctcccaattcatcaaggtaaggactccaaaaccagtgc
tccataccccttcccattttaaagacaggcaggcagaggtccatttcctggcactagaaa

Exon 17 +      28003      28219   0   Internal    217    91   Excellent
ctcaagtgatccacccgcctcagcctcccaaagtgctgggatgacaggtgtgagccactg
cacccgtccaggtctcaggatgttagagaatttaaccagcagtgacctggtccgttccat
cctgctgtggatgggaagtagagctctgctcacagctgtggccctaccctccctctgcag
ACTTGGCAGTGGATCAACCCAGTGGACTTCCAGGAAGAGGCATCCCTGCAGGAGGCCCTG
GTGGTAGAGATGTCCTGGGACAAAGGCGAGAGGACTGAGCCTCTCGAGAAGACAGAGCTA
CCTGAGGGTGCCCCTGAGCTGGCCCTGGATACAGAGTTGTCCTTGGAGGATGGAGACAGG
TGCAAGGCCAAGGTCCTGGGGCCCAGTGGGCCAGACG
gtcaggggtgcaaccctgcccggggggtgggggggctagacatccatcgctcctgggata
tcagggcctggaggcctgagggagaaacgaaaacatccactttgtcttacagacacgaag
agcgactatctcaatcacaacggctggttattaagcacttatggcatacccagcccattc

Exon 18 +      28332      28365   1   Internal     34    61    Marginal
tacagagttgtccttggaggatggagacaggtgcaaggccaaggtcctggggcccagtgg
gccagacggtcaggggtgcaaccctgcccggggggtgggggggctagacatccatcgctc
ctgggatatcagggcctggaggcctgagggagaaacgaaaacatccactttgtcttacag
ACACGAAGAGCGACTATCTCAATCACAACGGCTG
gttattaagcacttatggcatacccagcccattccatccactcacatgattccctaccaa
atccctacaaccaccccctgaaaggaaccatgactgttgtactttacagatgtgatcgtt
gaggctcagagagggtgagtgactcgcccgaggctacgtagcacacacaggagtcacatt

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