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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (36266 bp)
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PERCEVAL Exon Candidates (20 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1209       1333   0   Internal    125    93   Excellent
gggaggatcgcttgagtccaggaggtcgaggctgtggtgagccatgattacggcactgca
ctccagcctgggaaacagagtgagaccctgcctcaaaaagaaaaaaacaaaacaaaacca
aaaaaagcaatgttcccaaaagagaattaatgtcttctgttctctctcttaagaatccag
GGCCTGAAAACCCAGAATGAACTTGTGTCCATCCCAGAGATCACTGCAGATGTCATGAGG
TACCCTTTGTGTCACCAGCTCAAGCAGGCCTCTGGCCACTTTATCATCTGTGGTGGTCCT
GTGCC
gtgaccaggaggaaaaattagctctttgaagagaaagtagttctctattgcaggcactgg
cctcttaaattgttgcaggtggggaatggatgagaatatttgttttgggtgatcagaact
gagactcctattgtggattagtaacatgcctcctcctagaacaagggagggcagggatcg

Exon  2 +       1493       2183   2   Internal    691    88        Good
catctgtggtggtcctgtgccgtgaccaggaggaaaaattagctctttgaagagaaagta
gttctctattgcaggcactggcctcttaaattgttgcaggtggggaatggatgagaatat
ttgttttgggtgatcagaactgagactcctattgtggattagtaacatgcctcctcctag
AACAAGGGAGGGCAGGGATCGCCGAGACCACCACCGGGCTCCCAGCGAGGAAGAGGCCTT
GGAGAAATGGGACTGGAATTGTCCAGAGACGCGTCGCCTCTTGGAAGATGCCTTCTTCCG
TGAAGAGGATTACATCCGTCAGGGTTCTGAGGAATGTCAGAAGTTTTGGACCTTCTTTGA
ACGCCTGCAGAGATTCCAGAATCTCAAGACCTCCAGGAAGGAGGAGAAAGACCCTGGACA
GCCCAAGCACAGCATCCCAGCGCTGGCCGACCTACCTCGCACTTACGACCCACGTTACCG
CATCAACCTCTCTGTTCTTGGCCCTGCCACGCGGGGCTCTCAGGGACTGGGCAGGCACTT
GCCCGCGGAGAGAGTGGCTGAGTTCCGCCGAGCCCTGTTGCACTACCTGGACTTTGGCCA
GAAGCAGGCATTTGGGCGTCTGGCCAAGCTGCAGCGTGAGCGGGCAGCCCTCCCCATCGC
CCAGTATGGGAACCGCATCCTGCAGACGCTGAAGGAGCACCAGGTGGTGGTAGTGGCCGG
TGACACCGGCTGTGGCAAGTCCACTCAGGTGCCCCAGTACCTGCTGGCTGCTGGCTTCAG
TCATGTGGCGTGCACCCAGCCCCGGCGGATCGCCTGCATCTCACTGGCCAAGCGTGTGGG
CTTTGAGAGCCTCAGTCAGTATGGCTCACAG
gtgagtgggacgcaccaggtttccgatttttccagcgtgaccttgggggaataggttgct
tgtccatatggcagtatcaataaaaatgaagcacttacccttggacccagcgatgattct
tctagaactttatccacagagtggcttgtctgtggtctacatgacaaaggagctagcatt

Exon  3 +       3487       3798   0   Internal    312   100   Excellent
agtcaggcggatctcgaactccctacctcaggtgatccgcccgcctctgcctcccaaagt
gctgggattacaggcgtgagccaccgcacccggcctgcttagattttcaatttgggcagg
gccaggggctggtacccaggctcagggtcctctcctgatcctttctttctcccaccccag
GTCGGCTACCAGATCCGCTTTGAGAGCACACGTTCGGCGGCCACCAAGATTGTATTCCTG
ACAGTGGGGCTGCTCCTGCGACAAATCCAGCGGGAACCCAGCCTGCCCCAGTATGAGGTC
CTGATTGTGGATGAAGTCCATGAGCGGCATCTCCACAACGATTTCCTCCTGGGCGTCCTC
CAGCGCCTGTTGCCCACGCGGCCTGACCTCAAGGTCATCCTCATGTCGGCCACCATCAAC
ATCTCGCTCTTCTCCAGCTATTTCAGCAATGCCCCTGTGGTACAGGTGCCTGGGAGGCTG
TTCCCCATCACG
gtgagtacttccccctcctcccacatccccagacctccaacctggtctctgtccaaacct
ggacatgcctcttctctctgctgctgtatctcccatctctttcatttaaagatgttctct
ttttttaaagctaccattttctgagcattcataatcagctggttagagtgctaagtgctt

Exon  4 +       6312       6584   0   Internal    273    96   Excellent
gaaaggagaagcctggatccctgaatgaccacatggaacagagttgcccaccagcctgga
cccgttgcactgtcttctccgttagcctgtggtctcccccgtcagcctgcagcctcccca
gcccattgctctgagctggagggacagggtgtgcttctacctggggctgtctcctctcag
GTTGTGTACCAGCCGCAGGAGGCGGAGCCGACCACGTCCAAGTCAGAGAAGCTGGACCCG
CGGCCTTTCCTGAGGGTGCTGGAGTCCATTGACCACAAGTACCCGCCTGAGGAGCGGGGT
GACCTCCTCGTCTTCCTCAGCGGCATGGCGGAGATCAGCGCCGTGCTGGAGGCTGCCCAG
ACCTATGCCAGCCACACCCAGCGCTGGGTGGTACTGCCACTGCACAGCGCCCTGTCTGTG
GCCGACCAGGACAAGGTATCACAGGAAGCCCGA
gtggggcaggcggggggtctgcatgagtcaggggtggctgcgcacaggacttgtgtaact
ccacaaacacagggctcgggggctgtacttgtgcaaagtcgtagccacctagtggcagag
ccaggctgcgaacccaggtagtttggccccggagcccatgctctaaaccagaggtcggca

Exon  5 +       8417       8519   0   Internal    103   100   Excellent
ggggagggcccaggatggcccaggtgatggggtggacggtgagccatctccaaaagggag
gtctctgaaggaggaaagggttccagggaagctgctgacacgggggtgggcaagaaattg
gacacataggttagtcggggctgagttagttcctgacaccaccccctcccttcctcccag
GTATTTGATGTGGCACCCCCTGGAGTCCGGAAATGCATCCTCTCCACCAACATTGCTGAG
ACCTCAGTCACCATTGACGGGATCCGCTTCGTAGTAGATTCCG
gtaaggaccaccatgagcccctacccaccacccccaaggacttaggagcatggggtccgg
aggtgtgcgtgtgtggcaggggcgcaccagcttggattgggaagtacagttgactttccc
atatccaaaatgcttgcttgcaaccagaagtgtttggaatttcgggtttttttgaatttg

Exon  6 +      10928      11145   1   Internal    218   100   Excellent
gtgaggaaatgaaagaataaatgaacaaaatgtcagagttgggcccagaataagccctca
gttagcattaacagaataaaggagtaagtgagggtgttggcgagtgacaagagccaggcg
cgtggccagctgcacgtggctgccacacacagactccctttcctcattgctcccatccag
GAAAGGTGAAGGAGATGAGCTACGATCCGCAGGCCAAGCTGCAACGGCTGCAGGAGTTCT
GGATTAGTCAGGCCAGCGCAGAGCAGCGGAAGGGCCGGGCGGGCCGCACGGGCCCCGGAG
TCTGCTTCCGCCTCTATGCCGAATCGGACTATGATGCCTTCGCCCCCTACCCCGTCCCGG
AAATTCGGAGGGTGGCCCTGGACTCGTTGGTGCTGCAG
gtgaggcacgggcagaaaggggactatatcctaactgctggcacagggaggaacctggga
ggccttttttattttattttattttattttattttgagatagcgtcttgctctgtcactc
aggctagagtgcagtgctgtgatcatggctcactgcagcctccatattacaggctcaaat

Exon  7 +      15424      15598   0   Internal    175   100   Excellent
tgacctcaagtgatccgcttgccttggcctttcaaagtgctgggattacaggcatgagcc
acaacgcccggccaacactaggaattttaaaacgtcatgaatttgtgatctctgagcccc
gctgtgctgcacagtggctcttgtgttccccaatcttgggggttttgcttctcattctag
ATGAAGAGCATGAGTGTGGGGGACCCCCGAACCTTCCCCTTCATCGAGCCCCCACCACCA
GCCAGCCTGGAAACCGCCATCCTCTACCTCCGGGACCAGGGGGCCCTGGACAGCTCAGAG
GCCCTCACACCCATTGGGTCCCTGCTAGCCCAGCTGCCTGTGGACGTTGTGATTG
gtgagtacccacccccctcgtgatcactcagggccccaggagcgggtatgggcacagctc
actctctgagtggcctgggggcaagtctgtttcttccctgggtccagttcatttattcac
tcttcactgggccaggcactgttctaggtgctgggcatatagcagtggacagaacagaca

Exon  8 +      16535      16693   0    Initial    159    66    Marginal
aaaagcaaaaacaggtgagattcattttgataaaatagctgattcaacctaatataccta
aaacatcacaattttaacataatcaatagaaacatttttgcaagattttatgttattttt
taccatacgacgtcttggaaatcttggtttggaccagccatgttcaactgctcagtagcc
ATGTGTGGCCAGAGGCGGCCGTATTGGACAGTGCAGATGGTGCATGAGGGTGTTCGGGCA
GTGGGAACAGCCAGTACAGAGGCCCTGTGGGGGCACATGCCTGCTGCTACGGGAACAGTG
AGGAGCCCCGTGTGGCTGCAGTGGAGTGAGAGGGAGAAG
gtgggagatgtaaccaacagtctcatcattcattcattaaatcctttttttttttttttt
ttttttttgagactgagtttcgctcttgttgcccaggctggagtgcaatggtgccatctc
ggctcaccacaacctccacctcttgagttcaagcgattctcctgcctcagcctcccgagt

Exon  9 +      21152      21407   1   Internal    256    80        Good
tgcccatggccacgtgaccagaaagcacagcgcgtgggtttgaatctccatctgggtcac
gagacccttagtgggcaagatggagggggtgggagcaggagggcaggctggggccccgag
gggtgagggctgcgcctgtcctggcacccaggagcctcaaccccgtgtccgccgctgcag
GGAAGATGCTGATCCTGGGCTCCATGTTCAGCCTGGTGGAGCCTGTGCTCACCATCGCAG
CCGCACTTAGCGTCCAGTCGCCCTTCACCCGCAGCGCCCAGAGCAGCCCAGAGTGCGCGG
CAGCACGGCGGCCGCTGGAGAGCGACCAGGGTGACCCCTTCACGCTCTTCAACGTCTTCA
ACGCCTGGGTGCAGGTGAGGCTGGTGGTGGGGGCCCTGCTCAGGGCCAAGGCCTTCTGTG
GCTGTGGCTCCTCCTC
gtgtcccaccctcagccccaccctgggaggaccactgagccccccacagactgggcctgc
ctggggagggccatgtctccatcatccatgctttcggctcaggacagcatgtgcccaggc
ccggggctgagaggagcctggggtttctgaagcactgatgaaaacctgtgccacctggag

Exon 10 +      22007      22108   0   Internal    102    93   Excellent
cccagtttgtgggtagtctgggagggcttcccataggagggggcactggggctgagacct
ggaagcaggagagcaggtgtccctgagggatgcccattttggggctctgggtgctcggtc
agcccctccctgcccgcactggccaggccctgacaccctggcgtctgctcctccacccag
GTGAAATCTGAACGGAGCAGAAACTCTCGCAAGTGGTGCCGCCGCCGGGGCATAGAGGAG
CATCGACTGTACGAAATGGCCAACCTTCGGCGCCAGTTCAAG
gtgaggctcgggaggaggggtaaggccggccccactcaggcagacgtgtgtaagcacact
ccagaacactgcttccccttcccggacagtggtcagaccagaatcccaccctgcacccac
ctcccccaccacccggtgaccaggtgttggggcagctgggcagagcaaagggagcagaaa

Exon 11 +      23873      24115   0   Internal    243    99   Excellent
ctgaccagcgaggacagctctctctctggagcagcgatccatgcccagcaccatgcgagg
ggctgttttcagccccctttgggcactagcagccctgccactgggagggtccccatttcc
atgagtccagagcccactgagtctgccctgaggccctcacccctacccacctgcccctag
GAGCTGTTGGAGGACCACGGGCTGCTGGCTGGGGCCCAGGCCGCGCAGGTAGGGGACAGC
TACAGTCGGTTGCAGCAGCGCCGGGAGCGCCGGGCCCTGCACCAGCTGAAACGCCAGCAC
GAGGAGGGCGCGGGGCGCAGGCGCAAGGTGCTGCGGCTGCAGGAGGAGCAGGACGGCGGC
TCCAGTGACGAGGACAGGGCTGGCCCAGCCCCCCCAGGGGCCAGTGATGGCGTGGACATC
CAG
gtgggcgccatgggctgtggggtgtgggggtttaccaaggtgggccttggcctctcctgg
ggggtcccaggggacatggccctgtcctcatttcaggagccgggtttccatggacggtgc
ttggtcccaggtatctgcagagcctgggggtctgcggatcatggtaggagcccctcaggt

Exon 12 +      24330      24512   0   Internal    183   100   Excellent
ccaaggtgggccttggcctctcctggggggtcccaggggacatggccctgtcctcatttc
aggagccgggtttccatggacggtgcttggtcccaggtatctgcagagcctgggggtctg
cggatcatggtaggagcccctcaggtcccctaagactctgcctccccgtgctccccccag
GATGTGAAGTTCAAGCTTCGGCATGACCTGGCGCAGCTGCAGGCCGCTGCCAGCTCAGCC
CAGGACCTGAGCCGCGAGCAGCTGGCTCTGCTGAAGCTAGTGCTGGGCCGGGGCCTGTAC
CCACAGCTGGCCGTCCCCGACGCCTTCAACAGCAGCCGAAAGGACTCAGACCAGGTGGGG
CCT
gttctgccccatcctatgttttgtcctccaacacacgaaccctgagtgcctgtcctgtgc
cgggaatgcagtggtgactgaaacaaccctggttctgtccccatggggctcacaacccag
tgggaggacagacccatccccagacaacccagagtgggcagggcttggggagtccagagc

Exon 13 +      24849      24966   0   Internal    118    95   Excellent
ggcagggcttggggagtccagagcactataggagcccacagggggcatctgccccagatt
tggaggagtcagggagggcttcctggaggaggggacctgggccagagggtggaggagagg
catcctgggcagaggagagagcagataggagggcttgtgctttctctctgtcctccgcag
ATTTTCCACACGCAGGCCAAGCAGGGCGCCGTGCTGCACCCCACCTGCGTCTTCGCTGGC
AGCCCCGAGGTGCTGCACGCACAGGAGCTGGAGGCCAGCAACTGCGACGGAAGCCGAG
gtacagtgagcccaggcggaaggaacccccatccgggatgtgaggggcagggataccgtg
aactcccaggcccctctggctggggctcccacaccggcccaggctggtattgacgggggc
ccacaggaggggaagttccagggccaggcctccctgggtagccttgggtgactcacccct

Exon 14 +      25506      25672   1   Internal    167   100   Excellent
gctgcgtgctgggagtcacattcagatttggctgaccttcttgtctgagccaggccacca
aagccatgccgtaagcatactctttctatcgatgtgtactttgaccgggtgggacaggcg
ggcttctgatgggcctgggtgggccagggtgggcctgagcggtcctcctcaacctttcag
ACGACAAGGACAAGATGAGCAGCAAACACCAGCTCCTCAGCTTCGTGTCCCTGCTGGAGA
CCAACAAGCCGTACCTGGTGAACTGCGTCCGCATCCCTGCCCTCCAGGTGGGCCTCTGCC
CCACCCCGCCCCCATGCCCAGATATGAGAGCTGCGTTGCCCAGGGTG
gtgggtgggggcaccgcgtgggcttggaggggccacctggcacctgggctggccgcaggc
gtcagccttgggccgttgctgtggctgctttttctctcattcatggacttgctcaacagt
taacctgccaagtgcctgctgggtgccaggcgctgtgccaggtgccaagggcgcagcagg

Exon 15 +      28166      28424   2   Internal    259    87        Good
agcacccgaaggggtgcctggtacagcgggtagatggcgggtaggtggatgcctcacata
gacagggctggtgggtgggcaggagcccagccgggcagggcctgtctccaatagcgccct
gcccctcccacctactccctgtcttctgccccccctctttcagtccctcctgctttttag
CCGGTCTTTGGACACCAATGGTGACTGCTCCCGCCTGGTGGCCGATGGCTGGCTGGAGCT
GCAGCTAGCAGACAGTGAAAGTGCCATCCGACTCCTGGCGGCTTCCCTGCGGCTCCGTGC
CCGCTGGGAAAGTGCCCTGGACCGGCAGCTGGCGCACCAGGCCCAGCAGCAGCTGGAGGA
GGAGGAGGAGGATACGCCAGTCAGCCCCAAGGAGGTGGCCACCCTGAGCAAGGAACTCCT
GCAATTCACGGCATCCAAG
gtaccctccaccagggtgcccgtgcctccctatggccagaaggggcatccgtcactgggc
ttgagcctcgggaaggcctggcttcccattcactccacatgggcacatttgggggttttc
aggccacagaggttcagtcacttacacaaggtcactccactggtctgggtggagctagga

Exon 16 +      29255      29431   0   Internal    177    91   Excellent
aggtatattctagacagacccctggtcatgtgtgtctgcagccaaattgtgattggtgta
agcacttggctcccgtaactgcaaagcccgagggagggcttcaggcacagctggatccag
gtgctttggcggcatctccctgagtctgtctctctccatttcctgtctctccttccttag
ATTCCTTACAGCCTCCGGCGGCTCACAGGGCTAGAAGTCCAGAACATGTATGTGGGACCC
CAGACCATCCCAGCCACCCCCCATCTTCCTGGCCTCTTTGGCAGCTCCACCCTGTCCCCC
CACCCCACAAAGGGGGGCTACGCAGTCACTGACTTCCTCACCTACAACTGCCTCACG
gtaagcatgaaccctccttccctgaaggtgggatttcaggaagaccccaccaccccgttt
caccttagtccagggacatagttcccaagtggggcccgtggccctgagggcttctgggaa
gggtcccgggggggcacttgggtggtgggtggcacttggcgggggcccagccctgacagc

Exon 17 +      29625      29763   0   Internal    139    90   Excellent
ctccttccctgaaggtgggatttcaggaagaccccaccaccccgtttcaccttagtccag
ggacatagttcccaagtggggcccgtggccctgagggcttctgggaagggtcccgggggg
gcacttgggtggtgggtggcacttggcgggggcccagccctgacagctggcctgccacag
AATGACACAGACCTGTACAGCGACTGTCTCCGAACCTTCTGGACCTGCCCCCACTGTGGC
CTGCATGCGCCCCTCACGCCCCTGGAGCGCATCGCCCATGAGAACACCTGCCCCCAGGCC
CCACAGGATGGGCCCCCAG
gtaagcacaggactgtggggacccggccacctctgcccagccgtctgcccatcccatgat
ggtctcctgtgcgtgtgagcacttgctagagcttcgaggactgacgacctccacccgctg
gccctggctggtgccacacacaggccttgtcctgaagatcaggagcccaaggcagggaga

Exon 18 +      30419      30546   1   Internal    128   100   Excellent
gcggagtaaagacagacctgtgtatttttattaatctgggagggcttcctggaggaggca
aaactgggttctccaaaggccaggagagaacctgagccccacaggtgcctggcatttggg
tgcgggtagacctgtgcactggaacacgcccctcacagcctcctccttttcctcccttag
GGGCTGAGGAAGCTGCCCTCGAAACCCTCCAGAAGACATCTGTCCTGCAGAGGCCCTACC
ACTGCGAGGCCTGCGGGAAGGACTTCCTCTTTACACCCACAGAGGTGCTGCGCCACCGGA
AGCAGCAC
gtgtgagctgggccaggagccctgcccacctccgtgcagctgacctgccctccagcccag
gactaggggcaggactcttgcctgaacccccagcctgggcttagccctgtggtcctgtcc
cagtgcagagggcctggagcacggattgtgaataaagccgcacatgctgatacacactgt

Exon 19 +      31757      31932   0    Initial    176    50    Marginal
caggaggctgagacaggagaattgctagaacccaggaggcggaggttgcttgtgagccga
gatcgtgccactgcactccagcctgggtgacagagcgagactccatctctaaaagaaaag
aaaaagaaaatgaaaagaacaataaaatcactcaggagaaaaagaaggcacggcatagga
ATGGAAGGAGGACAACCTGTAGGTCCTACAGATGCGAAAAGGAGAAGAGAATACGATAAA
CAACGTGCCACACAGAAATTCACTCATTTGAAATGGAAAAAATTATTGAAAGACACTAAC
TACCCAAAGCTCATTCAGGAAGAAATAGATAACCGGAACAACTCTATTAAGGAAAT
gtaattcatagttaacaaagagaacaggctcagatgggctccctggtgacgtctaccaaa
catggaaatgatactcgcccacacccacttggccacagcataggggaggacgcctcctga
ctgatgttatgaggtcagcattatcctgctgctaaaagcaggctatgacaatgcaagaaa

Exon 20 +      34389      34460   0   Terminal     72    97   Excellent
tctaaaacttcacaagaatgtgctgtctgtgtctagcttcttttacccaacatgagcttg
catgggcttggttcattcattctgttccatgaattcatcacaatatatccattcttttgt
ccagggacatttggcttccagaaacctacccctaacaccagcccttccctccctctgcag
AACAAAGGCCCCATCAGAGGGGACGTGCTGGGTGTCAGCGTCAGCTTCTGGGAGGAGGAA
GGTCAGAGCTAA
ggcctgaaggatgatgaggtatcaagtgggtggaggggagacgctcaggaggtgggaaag
gcggaggtgcacaggcttggttccaggtacaaataacgttactaggagcacacagtacct
ggattttgatgaatacattgtacatttctgtcctgtatgtatccagggttataggacgtg

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