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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (22776 bp)
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PERCEVAL Exon Candidates (6 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1791       2121   0    Initial    331    80        Good
agaagcaatctcgactttcgcatttgagattccagacaggactcggctctccctctttca
tacccaggggaaactgagtccctcacccccttcaagaccccaggccgctcctcgctcccg
cccctcgaggcccttcgccggctctgcctcctcccccttcccgaccccaccggccataag
ATGATGTGGTCCAACTTCTTCCTGCAAGAGGAGAACCGGCGGCGGGGGGCCGCGGGCCGG
CGGCGGGCGCACGGGCAGGGCAGGTCGGGGCTGACGCCCGAGCGCGAGGGGAAGGTGAAG
CTGGCGCTGCTGCTGGCCGCCGTGGGCGCCACGCTGGCGGTGCTGTCCGTGGGCACCGAG
TTCTGGGTGGAGCTCAACACCTACAAGGCCAACGGCAGCGCCGTGTGCGAAGCGGCCCAC
CTGGGGCTGTGGAAGGCGTGCACCAAGCGGCTGTGGCAGGCGGACGTGCCCGTGGACAGG
GACACCTGCGGCCCCGCGGAGCTGCCCGGAG
gtgagcagccgccgccccgagcgcagggcttgcgtcccacggacagggagggagaggggc
ccgtgtccgaggagaaaacccgccccagggacaaaagcctgagcccggaggagacagctt
gcctcgcagtaagcgccagtgcccacttcgtcctctgctctcagaaactgctgagagata

Exon  2 +       4846       4962   0    Initial    117    46    Marginal
caaggttcaagcaattctcctgcctctgtctcccaagtagctgggattacaggcatgcac
cacaacatccggctaatttttgtatttttagtagagacggggtttcaccatgttgacgag
gctggtctcaaactcctgacctcaggtgatctgcccgcctcggcctcccaaagtgctggg
ATGACAGGCATGAGCCACCACGCGCAGCCCAGCATCCTCTACCTCTTGCTGCTGCATAAG
AACTCACATATCCCACTCCTCCTGGCCGGACATCTCACCCCTTCACCTCCCCTCGGG
gtacttggggagcgcccgcccacaccacctcacctgactcagggattgatttcttgtccc
ttcatatccttgttcaaattgaaaagttcaatttttcacattcatggactgcctggtccc
tcttctatggcctttactcctgttattctcgacctctcttctctctttctgtgcctcagt

Exon  3 +       8547       8684   1   Internal    138    99   Excellent
ctttctgagtcttaattccttcaacagtgtaagtaaaatgttgggctggatgatactcta
cttgaaaattcttctctcgtcccgaatcttacatcttcctggttctgggttcctatgggt
gaatcctcctcattccctacatcccatgttctctgcttctttcctctctcctgctggcag
AGGTGAATCTGGCAGCTGCGGTGATAGCAGTGCTGGGCCTGGCAGTCATGGCCTTGGGGT
GCCTCTGTATCATCATGGTGCTCAGTAAAGGTGCAGAGTTCCTGCTCCGAGTTGGAGCCG
TCTGCTTTGGCCTCTCAG
gtgagggttcagagcctggaggctgaggacattgcatgctgggaggatctccaggcactg
ttgcatgctgggagatggggtctctatgcactgttgcacgctcagagatggaatctctat
gcactgttgcatgctgggagtagggtctccacacactgttgcatgctgggagtaggatct

Exon  4 +      11046      11101   2   Internal     56    88        Good
actcatccatgtatctgttagtattgtgtccatcctatccatccatccatttatccttcc
gttgattgatcagtttcctccttctctccccttccttcccctctctctctttccctatgt
ctctttctatctctctcttttttttttgtttttgagacagggtctcgctctctcatccag
GCTGGAGTACAGTGGTGCAATCTCATCTCACTGCAACTTCGACTTCCAAGGCTCAA
gtgattgtcctccctacctttcagcctcctgagtagctgggaatacaggtgcatgccgcc
aagcccggctaattttcggtttttttgttttttttgttttttttttttttgtagagatag
ggtttcgctgtgttgcccaggctggtctccaactcctgagctcaagtgatccgcccacct

Exon  5 +      20864      21014   1   Internal    151    81        Good
ttctttatctccagcttcccaaatgctgcctgctatatagtaggtgtttagtaagtattt
gttgagtgcacgcgtgggaaggtgccagggtgggcgggagggctgggagcggatggcgga
gatgttcagacacagctggggtcgcgggcgtctgactgcgagctgtcctctctcccgcag
GCCTGCTGCTCTTGGTGAGCCTGGAGGTGTTCCGGCATTCCGTGAGGGCCCTGCTGCAGA
GAGTCAGCCCGGAGCCTCCCCCGGCCCCACGCCTCACCTACGAGTACTCCTGGTCCCTGG
GCTGCGGCGTGGGGGCCGGCCTGATCCTGCT
gttgggggccggctgctttctgctgctcacactgccttcctggccctgggggtccctctg
tcccaagcgggggcaccgggccacctagagccacgcgtgagacttctctaagcaaccacc
gagccctttgaccttctccattgtacccccaagatctttttgccccatctcctagagaaa

Exon  6 +      22622      22665   1   Terminal     44    88        Good
aatcccagctactcgggaggctgagtcaggagaattgcttgaacctgggagttggaggtt
gcagtgagccgggatctcgccactgcactccagcctgggtgacagagcaagactccgtct
caaaaaaaaaaaaaaaaaaaaaaaaaatcaaaaaggtggggggaagggggattggttcag
GAAAGCCTTCCGAAGAAGATGACGAACTTGAGTCTTCAAGGTGA
gtaagaatcagagaaagtggagaacgtcacgggcgttccagctgggtgggagagcctgga
cagaaacaagaggaaaaacatgatgaacctgtgagtgaggaaatgtgaacgc
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