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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (91120 bp)
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PERCEVAL Exon Candidates (21 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       3618       3717   0    Initial    100    89        Good
ggaggattaaacttgagagtttagtacagtgcctgacacacagagagcacctatagttgc
cagctattattatcagcagtagaggtgacaagtaaaagaagtgagtgatggttattcaag
gagaaagaatgaagagatcggaagtccacaaagaagcactcttagtgcatgcctctattg
ATGGAGGAGGAGAAAGGGGACAGAGAAATAGAGGAAGAGATGAAGGGATACAACCAGGAA
AGAGCTATCACAGGCCCAAGAGAGGGACATTCCAAGGAAG
gtgagaggactgtggtcaaacgtgtttgtacatgttcctgaaaaagtatgagtcaataca
cacttcataaatgaatgtatttaaatgcttcatgaaaatatttatttaaagaaatcttcg
atgaatctgcttcaaaagggaataatcagtgtttaaaactgggcttggagctggcgtgtg

Exon  2 +       4184       4249   0    Initial     66    41    Marginal
gcctgctattggtacatacctgtgtgttgtttctctcccacccttccctgtttatacctt
ctttgtggcactttggttaagcagtgctgtataatttctcttggttaactttgattgtat
cttgtcagaataagacagtgaccacagtttccaaagatccagggaaacagccaggccaca
ATGAGAAAAAATTCCAGTTTTTGGGATGATCAGACACCAGTGTCCTTCAGATACGGGCAT
GCACGG
gtgacagtgggacccgttttggaagggtagatgaaagcagtgttctctcacccctgggga
tttccaggcttctcacttgggtgtgaggtccaaatcgtccctgaacctcctgtagatact
tatttttcctgggccttcctgattcccaaggttcttggtgtagaccagcttcctagttgc

Exon  3 +       9260       9387   1   Internal    128    70        Good
ggggcggttgcagtgagccaaggtcactccgctgcactccagcctgggcaacagaatgag
actctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaagaaagaaaaagaaagaagaaaaaa
agaaaagaaaaaagaaaccagagcagctggtgaaagctcacttaccttctgtataaatag
GATTCAGTTTGGCTGCAAGTAATAGAAAACCCCAAAACAACAGTGGCCTAGACAAGGAAG
AGGTTTATTTCTCTCTCATCTACAAGCCCCTGATTGGTCATTCCAGGGCTGGCATGGCTG
CCCTTGGG
gtgaggacccacactcctgtctgcttactccagtggtgcctggttcaatgcctggcacat
gacagattctcagtaatacctactgaatgactgaaaaaaccattaactaacagaaggaca
ttgaaaaacttttgatatgtagaaccaggatgatttcctaaagagtgggcctattctcag

Exon  4 +      11656      11685   0   Terminal     30    86        Good
gttactattgaaagaatagctgttggaagtgatagtttcataagtggccacaaatattcg
aaaaccctagaaatatgggcatctaagtcccttcactgcttcaaaccttggtggccccac
ctcttgtaatctgctctgagcccttattatcaaatacagatattgttttctctgtcccag
GAGATCCAGATCCTGCCCTACAAGGACTGA
actaggggttcaaaaagacctaagctctcaggaataaaaagtattgactcaggcctttgt
cagcacttccgcagatggccagatctgggcactgttgatttgtcctgtgggctgtctgtc
ccaagctcaggtttcctcatctacctgtcctatgttagggcctaactatttaatcagcgt

Exon  5 +      19945      20040   0    Initial     96    60    Marginal
actacagcttctataaacatttgtgtgcaagtttgtgtgggtataagttttcaactcaat
ttagttgaggtttagtttcaatgaatcagacttaatggtctggctgaattgaatgtcatt
ttcacatgtgtttcacatcaagatgtttgcatactctgctgtgctgaaaactcatgtaag
ATGTTCATTAGATCAAGCTGGGTAAAAAATCAGCAAGTTAGAGGAGGAGAAAAGGCATTG
GACTTCGATGAACATGTACTGAAAGAAACACTTCCT
gtaagtcgcttctaaaatcctaacatttaagacttgcttaattctgaaatttgaatatat
aaaacatcctcactcccataagttatggacctgaagtaaactgaacttgggctggcctca
gtgaaatggcagtagtgaagttagaaataagcttaatctaaaacttaatttaaatgaaaa

Exon  6 +      32990      33032   0   Internal     43    75        Good
acactgacacaaatgtttgcagttacagaaagaaaggcatttattgcagggcaccaagca
aggaaaaggggcatgatggcttacaagcaagggtttttaaaggcaggaatgagggggttt
ccaaagtgagttaggggcttaggaatttgtggaacttccttatccattttctggttccag
TCTGTCGAAGGTCAACATGACTGTGATCAGCATTTGTTATCAG
gtgagagtcctggtttctgaaaaacaactcaaggatgtatgtaaagatgttatctttgtt
tctatagggaaccaaacatcttgtgaccctgacttacttgggtggcttggttggtggatt
attcattcacatccctaatttctggttgcagggctagctagatacctggaattttccttg

Exon  7 +      33418      33542   1   Internal    125   100   Excellent
ctccagggtgggggtggagaagcctgacaggctcctaagtgggtccctgcgccatctcaa
agtgagtcagcaacgttccgtggccagcttcccacctcttttgtcttatcttctctccgg
ccttgggggctgccttctgttcctggtctgatgccatgttgtctttcccccagagtgcag
ACATCCTCAGCACCATCGGCTATGACAACATTATCCAACATCTGAACAATGGCCGCAAGA
ACTGCAAAGAGTTTGAAGACTTTCTAAAAGAAAGGTACGATGATGCTCTGTCCTCTCTGA
AGAGG
gtgggccaagatgtctccacacagacaaggaacaatttcctttttttcatttgtgtttaa
tggttctgaagaccctctctctgctctaggttatggaatgatacctgagaagtacatgat
acttctgtcctaaagttcttagaaacaagtttgacacataagatttatgatgaaactgcg

Exon  8 +      33976      34126   0   Internal    151    86        Good
cttttagactgctgaggaagagactgctgaggattggcaaagaaggaaaggagagggaag
gaaaaaggaaggagagagggagggagggaaagaaagaaggaaataaaatagaggacgggg
tggcttcatggaggagtaggtccttgtggtggccctcagagggtgaggtggatttgacag
GTGAAGAAGTACCTGGATATCTGGGAGAACAGCAAGCTTGAGGTGGGAATCAGATGGCCC
ACGTGGTTAGAGGGAGGCAGAGTGCAGCTCAGAGACCAGGAGGATGAGGAGCTGTGGGAA
AGCTGTGAAGCCGATCATGATGCTCCTGGGG
gtggcagggcatggtagtccatggggaactggcatggtttagaggattttcttttcttct
gtttaaaaatggataagatttttaaaaaaacaaaacttagttttgtggaaacttattgat
ctagaatattccattttacagaggttctggatgaaagaatatgttaagaggatttggggc

Exon  9 +      41609      41694   0   Internal     86    99   Excellent
ccttcattgcctgcctggacccattgcttcccatttacggggaaataccctctcaacctc
agtggttgttccctggttttatgaggctgagattctagtttcacttccattaaagctcct
tcttttctccaaaaagcacaccatgatgcttgctggaactcattacttcccgggttctag
GAGAACATCTTGTTTCATGGGGAACAAGATGTGGCCTATGGTATGTTTAGATTCACGATG
TCTTCCTCTTACAAGAAAGAAACTGA
gtgagtgacttcttatcttggaaacaacaaaagagtctaaagaaatcttaatggatataa
ttctgcggctaaaaggataaaatgcctgtatattatatatttttaaaaatgaaaatggac
tgaacatctttttacatgtaaaaatattaaatgttcattgtagcatgttatacattttta

Exon 10 +      44899      45165   0     Single    267    57    Marginal
agtttgtctttctaaagtttactttcactagcatttttcatcattatctttccgaaaccg
attgttcatcatgtcaaccatttcctcatcttcatcttcttcatccacccaaattggctt
cttttgaggtgcacaattaccttttgcttcattctccgcttctgagtctcccaagtcttc
ATGTCCTTGAACCCACGGACCCCGCAGACGCCGCAGCAGCGTGTCCTCGTCGTCCTCGAC
ATCGCCGAAGACCAGCTCCTCCAGGCACCACTCCACGGCCGGTTTGTCTTCTCCAGCGTC
GGGCGGTTCCGCTGCCGGAGCCGTCTCTCCTCTTCCCTCGCCGCGCTTGGCCTGGCCGGC
GGTTTTCGCTGGGATGAAGCGGCAGCCTTTTGGGGCGGCTCGCTCGGCCCCGCTCCGGCT
TTCCAGTCCGCCCTCGTTCCGGGCTAA
cgcttcggcttcgctgcggttctactgtgcagtttcattcggctcctcagttcccgcggc
atcgttaggtttgaggagaaacgcaggcgctcgcgtgaaacctcactgcgcatgcgcgcc
tcttttctttttgagacactgtctcactctgtcgcccgggctggagtgcaatggcgcgat

Exon 11 +      48772      48849   2   Internal     78    85        Good
catcgatctttttacagttgttccctatcatacagagggagtcttgcattttagagaatg
gtgttgtatctgagcttctatggtcacaggtgcagttttgctttccaagggagggtcatt
gtgtcttaacaaagagtcagctctgagaaggacccataaccctctcttctgttcccctag
GGCAGCAATTGAAGAGAGGTATGGCAAAGATCTGCTCAACCTCTCTAGGAAGAAGCCGTG
TGGACAGTCTGAAATCAA
gtatgtatcaagtttttttctggtttccaggttggttaataatgcctgggagctccctcg
cttcagcagacagagttaccaggaggttgaagtatgctggctgaaaaaaaaatttttttg
gagatgggatctcactattttgtccaggctgggctcaaactcaagatcctcagtcaggcg

Exon 12 +      57521      57563   2   Terminal     43    86        Good
gattgaggaaactggacttaagaagtcttggtcttttgctgtctctctagctcatgggca
aaaattggtctgtagtttctaagttaagatatgggcagagagaagcatgcaaaggcatta
taataagattgtgcagagaatttccagaactgaaattatatatgtgcttgttttttttag
CACCCTGAAGCGGGCCCTTGAAGTCTTCAAGCAGCGTAAGTGA
ttttttttttaaaaaatgtattcactgcccttgacaagccctgtgtctgtcgtcaaaggt
gtgttttaatttgaacagcagtttcatagtgggtgaaaaaaaattagagcaactcctaag
gtgagacaaagctctgcaggctcgaaatgagctggagaacctgcacacctgcacatcatg

Exon 13 +      73915      74022   0    Initial    108    73        Good
gagagagagagtgagctttcaaagactgataagaaaaagcatctgccctctgggagccca
tggcttagtgacaatcagagcactaatcagacggccctgtccatgctggacttcctgggc
caagggggctgcatttcatggttacactctgttcatttgttttggttctctttgttcata
ATGACAAAGGCAAAGAAGAACTATGAGCAGAAATGCCGGGACAAAGATGAGGCAGAACAG
GCCGTCAGCCGGAGTGCCAACCTGGTGAACCCGAAGCAACAAGAAAAG
gtacccaggagggctaacaacccgaaaaatctgagactgacctatgtcaggctaaagcca
attatgaatcttcataagaaatgaacctgtatcctaaacccctggaaatatcttccttca
tgtattgggggtcttctgaacctgaaaaaccactgccacatatttgggggttaggggaag

Exon 14 +      74619      74664   0   Internal     46    89        Good
ccaagattgataagattgcagggcacgttgaatgatttgctcatgagggaaatgtacaca
ggacttgcactagacctggtctcttcatagttactgcttttcaatctgttttgcctgtgg
aagcctcgtccagcattcccaatgcttgctctttttttgtttgtttgtttgttttcacag
CTTTTTGTGAAACTGGCAACTTCAAAGACCGCAGTAGAGGACTCAG
gtgagggggcagttcctacggatgggggagggttgctggtggggtttacgttatcctaaa
tgtgtccctgagaaagggagttttatataccttaaagagagaatatatggatattcagca
ggattagtgagatatctgaagggaaaaagggaggaaggaagggagagagtaaggaaggga

Exon 15 +      75409      75468   1   Internal     60    69    Marginal
aaagtaacttggtgcccctttagggctcaaggtagttctcttctctgcatccttcatcag
acaattttgaaaatgaaaagcgatgggaaatactgaggtggaattacacaaacaaaaccc
tggctgaggtttcttatcagctttcacttcttccttagaacctttctttctcaatgttag
GTCCAATGTTTAAAAAGAAAGTGATACCCTCCTTTGCCTACTTCACCAAATATGATGAGG

gtgagagatgcaataactcccagtgctcagagtcctgggggccttgtaagctcagcacaa
ctcggatgagtttcttttgccatctgagaccagcctgtgggtgtatctgcgagccacctt
cctgtctagtttctgacccaggtctctcccttctgttgcagacaaagcatacatgctgca

Exon 16 +      75630      75745   1   Internal    116   100   Excellent
ttcaccaaatatgatgagggtgagagatgcaataactcccagtgctcagagtcctggggg
ccttgtaagctcagcacaactcggatgagtttcttttgccatctgagaccagcctgtggg
tgtatctgcgagccaccttcctgtctagtttctgacccaggtctctcccttctgttgcag
ACAAAGCATACATGCTGCACATCGGCACCCTGGATAAGGTCCGAGAAGAGTGGCAGAGTG
AGCACATCAAGGCCTGCGAGGTACCCGTAACCGGAAGCTGCTCAGGACTGGGGTGG
gtgggtgggggtgtgtgtaacaggaagctgctcaggacgggggggggaggggaggagggg
gaggggagggagggaagggggagtggggccgggggttgggggaggacgagggggcgggag
gtgggtcttctgcccagaacctggagagtctacttttgtagaaatgatctgcccggattc

Exon 17 +      79755      79853   0   Internal     99    57    Marginal
tgtttgcattctttgtgatatgagtttatgagtttcctcagtggtgggggagaagcattc
taaattggacaataagtttacagataactgaaggttgacactgtttcttaagtcacagct
agccaaaatgaatggtccttttccttgcatatctatgtacacgtagctatttttctgtag
GCATTTGAGGCTCAAGAATGTGAACGAATAAACTTCTTCCGGAATGCATTGTGGTTACAT
GTGAATCAGCTGTCACAACAATGTGTCACCAGTGATGAA
gtaagtcagaggcatccactgaggattgtcgtgtgcatgttggatacattagagtagaag
gaactatagatattgattggttcactttgcccttggtgaagtaaggtgacttgcctaagg
ccatacagtgagttgacagaaggatgcagataacatgtaacctgactcctggctcatttg

Exon 18 +      81256      81352   0   Internal     97   100   Excellent
cactatgttggccaggctggtctcgaactcctgaccttgtgatccgcccaccccaacctc
ccaaaatgctgggattacagacatgagccactgcgccccgcctcaaacccatgtttttaa
ggagctgtgtcacaatgatctcaacatacctctacctattaattgacctttttttattag
ATGTACGAACAAGTCCGAAAGAGTTTAGAAATGTGCAGCATTCAGAGGGACATTGAATAC
TTTGTGAATCAACGCAAAACTGGACAGATTCCACCAG
gtgaatggggcagtggggtggggagtgttatttacacaattctattagcctttcttgtta
gatgtcattaaggatgaaagacgcctgcctcttcatgtcctgtttcttggtgactctcct
agcacccatcatgtatgagaatttctactcctcccagaagaatgcagtcccagcaggaaa

Exon 19 +      81414      81556   0   Internal    143    80        Good
ttaattgacctttttttattagatgtacgaacaagtccgaaagagtttagaaatgtgcag
cattcagagggacattgaatactttgtgaatcaacgcaaaactggacagattccaccagg
tgaatggggcagtggggtggggagtgttatttacacaattctattagcctttcttgttag
ATGTCATTAAGGATGAAAGACGCCTGCCTCTTCATGTCCTGTTTCTTGGTGACTCTCCTA
GCACCCATCATGTATGAGAATTTCTACTCCTCCCAGAAGAATGCAGTCCCAGCAGGAAAG
GCTACAGGGCCTAACTTGGCAAG
gtaataaccagctgcctttcatatgaagaaaaatacttttaacaaacattgttatcatga
atgttctaagacatgttagaattggaacatatctactactgcatctgcttaataaggctg
cttgctttttggaaatagtatttttaggacaaatattaagtggattttaatagtcatagt

Exon 20 +      83618      83670   1   Terminal     53    57    Marginal
gtctttttctttctttgaacgcctatgatatctctgggagaagtacacatcttagcactt
cttattagttgtatgggatgtgagggcagtctggctgcaacatttgtcagcccattgatt
gctagggttgattcggtgcatccggctggctaagcgggtgtccccttcctccctcaccag
TCCGTGTGCATCCCTCCCGAAGCTACGTGCTCAAAGAGGATGATCATTTCTGA
tagaggagggccagtctttggtcaagagtatatgagtagctgcattcccctgcagctact
ccaaacaagctctcattagttgtatgccttgaataataagaagatcccaaggtcaggtac
aactttgtcttctgtattactcacaacagctgacacagttctgagtacatagtaggtgtt

Exon 21 +      84066      84185   0     Single    120    62    Marginal
tacctatccatgttcaagagaatgagtgtactagtctgtttacatgctgctgataaagac
atacccaagactgggaagaaaaagaggcttaattggacttacagttccacatggctgggg
aagcctcagaatcatggcgggaggtgaaaggcacttcttacatggtggtggcaagagaaa
ATGAAGAAGATGCAAAAGCGGAAACCACTGATAAAACCATCAGATCTCGTGAGACTTATT
CACTACCAGGACAACATTGTGGGGGAAACTGCCCCCATGATTCAAATTATCTCCCACTAG

gtccttcccacaacggtggaaattatgggagatacaattcaagatgagatttgggtgggg
acacagagccaaaacctatcaataagggaggaggacagtttatgctgcacttaacagttc
actaaaaatttagtgatggaaaaaaaactgtagtggctgaaattatatctttgaacaata

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