-------------------------------------------------------------------------------- GrailEXP v3.31 [March, 2002] http://compbio.ornl.gov/grailexp/ Authors: Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and Edward C. Uberbacher, 1996-2001 Reference: "Automated Gene Identification in Large-Scale Genomic Sequences", Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4, Number 3, 1997 Sequence: >GrailEXP Input Sequence (11854 bp) -------------------------------------------------------------------------------- PERCEVAL Exon Candidates (3 predicted) Index Std Begin End Frm Type Len Scr Quality Exon 1 + 1051 1155 0 Single 105 60 Marginal gtcatttccattagtatcttacatcagaatcacaagtgaaatgaacatgctgtaacctag tattttaaaaggttatgttgaaggagtaaagaggcttaaattaattttcccttttctcat ccagtaggcctttactcaataggatttcttataattctatattaatccatgtctctgtgg ATGAACCAAACAGACCACAACATAGAAGAGCCTGCCAAAGTGGCTTCCTGCCAGCAGCCC TCTCTCCTCTTTAAGATAGACTTCAGCTTAATGATTGTACAGTGA tccaaataaatgtagaaagcaaagaacagacacgtatctcattatcttctgcaaagatct atttgtttagccatgtgcaaatattgccctaaaatggtaagtcggttagcacatattaat cattcactagatctattcaattcctaaaattaatgttaatttaatatgcagggggagttg Exon 2 + 6385 6467 1 Terminal 83 83 Good aaccgcagggccttaaagagggactaacagccctggttaggagagctcccaggtctgggc tcctacaagggctgtagctcttctctccctctgttcgcccacaacgaggtgagcaaaggg catgtttcagtcctgtttgtgggtttgtggtacagctcttctagacttgccatttgacag GCCCCAAGTTCTCGTCCTGCAACCAGAAAGATGAGGCACAGAGACAAGCGGAGGATGAGC AAGAGGAAGAAGAGCTTTATTGA gcagtagaatagctcagagacctgctgtagatagctcttttctgtagccagggtgtctgg acgagtgttcagctctcagcagagcgtagaaagccctgggttaggttgctcctctctaca gacaggtctccctggagtggaagctcctctctgccgctggttgtccctacattctccagc Exon 3 + 7168 7230 0 Initial 63 43 Marginal caagaacaggcacctccgagcctgcaaggacaggggccttcctgagcgagagtgcaggga ggttttcccaggcctccaagagtgtaaggatgcctgagtctgcagccgctgtttgggcag ctgcagctgcacccgggagtggggcaggactcctgcctgctccacggagcgaggctgggt ATGCAGCCCTGGTTTGGGCAGCTGCAGCAGCACCCGGGGAGCTACCACCCCAACTCAGAA GGG gtggggctccagcttgtccacggtcccctggctccacacagtaggcagccccaaccacgc ctccctgctccagccgggtgatggcagtggcaggttgtctggagggctgctaccatcacg ggaaccaaatgaaagtaaaagtaagccacagtgcttagaacggtttcagacaggacagaa --------------------------------------------------------------------------------