-------------------------------------------------------------------------------- GrailEXP v3.31 [March, 2002] http://compbio.ornl.gov/grailexp/ Authors: Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and Edward C. Uberbacher, 1996-2001 Reference: "Automated Gene Identification in Large-Scale Genomic Sequences", Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4, Number 3, 1997 Sequence: >GrailEXP Input Sequence (21578 bp) -------------------------------------------------------------------------------- PERCEVAL Exon Candidates (7 predicted) Index Std Begin End Frm Type Len Scr Quality Exon 1 + 267 451 0 Internal 185 64 Marginal ggagctgggtcctggtctgaaggacagcagtccggagctaacggttgagtctccaaagtc ttcatactgcagaggaagcacagcggagattagcctcagccaggatggcttcgaagttct cagggatccgacgcagagctaaagaaacccacctgtgcttccctcctcttctgggagtag GCAGAAGACTCCCGGGAGGAGAGGCGAACAGCGGACGCCAATTCTTTTGAAAGCACTGTG TTCCTTAGCACCGCGGGTCGCTACGGGCCTCTTGCTGTCGCGGGATTTCGGTCCACCTTC CGATTGGGCCGCCGCATCCCGGATCAGATTTCGCGGGCGACCCACGGAACCCGCGGAGCC GGGAC gtgaaaggttagaaggtttcccgttcccatcaagccctagggctcctcgtggctgctggg agttgtagtctgaacgcttctatcttggcgagaagcgcctacgctccccctaccgagtcc cgcggtaattcttaaagcacctgcaccgcccccccgccgcctgcagagggcgcagcaggt Exon 2 + 2598 2706 2 Internal 109 78 Good gaaagaagtgtgcagaaggcaagcccggaggtattttcaagaatgagtatatctcatctt cccggaggaaaaaaaaaaagaatgggtacgtctgagaatcaaattttgaaagagtgcaat gatgggtcgtttgataatttgtcggaaaaacaatctacctgttatctagctttgggctag GCCATTCCAGTTCCAGACGCAGGCTGAACGTCGTGAAGCGGAAGGGGCGGGCCCGCAGGC GTCCGTGTGGTCCTCCGTGCAGCCCTCCGGCCCGAGCCGGTTCTTCCTG gtaggaggcggaactcgaattcatttctcccgctgccccatctcttagctcgcggttgtt tcattccgcagtttcttcccatgcacctgccgcgtaccggccactttgtgccgtacttac gtcatctttttcctaaatcgaggtggcatttacacacagcgccagtgcacacagcaagtg Exon 3 + 12178 12279 2 Internal 102 69 Marginal tgggttgtggtgaaacattggaagagagaatgtgaagcagccattcttttcctgctccac aggaagccgagctgtctcagacactggcatggtgttgggggagggggttccttctctgca ggcccaggtgacccagggttggaagtgtctcatgctggatccccacttttcctcttgcag CAGCCAGACTGCCTTCCGGGTCACTGCCATGGAGGAGCCGCAGTCAGATCCTAGCGTCGA GCCCCCTCTGAGTCAGGAAACATTTTCAGACCTATGGAAACT gtgagtggatccattggaagggcaggcccaccacccccaccccaaccccagccccctagc agagacctgtgggaagcgaaaattccatgggactgactttctgctcttgtctttcagact tcctgaaaacaacgttctggtaaggacaagggttgggctggggacctggagggctgggga Exon 4 + 13564 13791 0 Internal 228 95 Excellent atctcaaaaaaaaaaaaaaaaaagaaaagctcctgaggtgtagacgccaactctctctag ctcgctagtgggttgcaggaggtgcttacgcatgtttgtttctttgctgccgtcttccag ttgctttatctgttcacttgtgccctgactttcaactctgtctccttcctcttcctacag TACTCCCCTGCCCTCAACAAGATGTTTTGCCAACTGGCCAAGACCTGCCCTGTGCAGCTG TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAG TCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGC GATGGTGAGCAGCTGGGGCTGGAGAGACGACAGGGCTGGTTGCCCAGG gtccccaggcctctgattcctcactgattgctcttaggtctggcccctcctcagcatctt atccgagtggaaggaaatttgcgtgtggagtatttggatgacagaaacacttttcgacat agtgtggtggtgccctatgagccgcctgaggtctggtttgcaactggggtctctgggagg Exon 5 + 14510 14619 0 Internal 110 100 Excellent aggagaatggcgtgaacctgggcggtggagcttgcagtgagctgagatcacgccactgca ctccagcctgggcgacagagcgagattccatctcaaaaaaaaaaaaaaaaggcctcccct gcttgccacaggtctccccaaggcgcactggcctcatcttgggcctgtgttatctcctag GTTGGCTCTGACTGTACCACCATCCACTACAACTACATGTGTAACAGTTCCTGCATGGGC GGCATGAACCGGAGGCCCATCCTCACCATCATCACACTGGAAGACTCCAG gtcaggagccacttgccaccctgcacactggcctgctgtgccccagcctctgcttgcctc tgacccctgggcccacctcttaccgatttcttccatactactacccatccacctctcatc acatccccggcggggaatctccttactgctcccactcagttttcttttctctggctttgg Exon 6 + 14963 15143 2 Internal 181 57 Marginal cttttctctggctttgggacctcttaacctgtggcttctcctccacctacctggagctgg agcttaggctccagaaaggacaagggtggttgggagtagatggagcctggttttttaaat gggacaggtaggacctgatttccttactgcctcttgcttctcttttcctatcctgagtag TGGTAATCTACTGGGACGGAACAGCTTTGAGGTGCGTGTTTGTGCCTGTCCTGGGAGAGA CCGGCGCACAGAGGAAGAGAATCTCCGCAAGAAAGGGGAGCCTCACCACGAGCTGCCCCC AGGGAGCACTAAGCGAGGTAAGCAAGCAGGACAAGAAGCGGTGGAGGAGACCAAGGGTGC A gttatgcctcagattcacttttatcacctttccttgcctctttcctagcactgcccaaca acaccagctcctctccccagccaaagaagaaaccactggatggagaatatttcacccttc aggtactaagtcttgggacctcttatcaagtggaaagtttccagtctaacactcaaaatg Exon 7 + 18085 18195 0 Terminal 111 100 Excellent catctcaaaataaataaataaatatttttaaaagtcagctgtataggtacttgaagtgca gtttctactaaatgcatgttgcttttgtaccgtcataaagtcaaacaattgtaacttgaa ccatcttttaactcaggtactgtgtatatacttacttctccccctcctctgttgctgcag ATCCGTGGGCGTGAGCGCTTCGAGATGTTCCGAGAGCTGAATGAGGCCTTGGAACTCAAG GATGCCCAGGCTGGGAAGGAGCCAGGGGGGAGCAGGGCTCACTCCAGGTGA gtgacctcagccccttcctggccctactcccctgccttcctaggttggaaagccatagga ttccattctcatcctgccttcatggtcaaaggcagctgaccccatctcattgggtcccag ccctgcacagacatttttttagtcttcctccggttgaatcctataaccacattcttgcct --------------------------------------------------------------------------------