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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (38068 bp)
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PERCEVAL Exon Candidates (14 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1498       1639   0    Initial    142    78        Good
agcgggtctgggactggtggcaccggcggcggcgtaggacggaggcgtcgctaggtacgt
gcgcgggccgtgttccggtaggtgggcggcttcgggtccgagggccgcggcgtcccagag
cccggggggtgcttcggcgtcctcgctgtcccccgccgtaccccaccctctgcagccgca
ATGACGGGAGGGGAGCGCTTGGGTCGCGCCTGGGCTGGGGATCGGGCGGCGGCCAGCCGC
AGCGCCCCAGTTCCAGGCACATTCGGTATGATGGGGTGGCGGCCCGTGGCCTTTGGCAAG
AATGCGAAGGCTTATCGGGGAT
gtgagtagtagctctccactgaacacttttctcgttgagcattttcgatttaaacaatcc
tagctccttcacaacaaagctgcaagtcaagtgctactgtttcccccattttacaggtga
ggaaggtggtggggccctgagaaaggaggcaacttaaatggcagagcccggaatagaacc

Exon  2 +       2586       2722   1   Internal    137    52    Marginal
aaagaaagaaagagagagaaagaaaagaaaaaaaagaaaagaaataacgtaaatttatta
cttgggggaacttggaacggaagtgggtaattgtgtttttatttagtgcaatgtcctggg
acaaggccttggaactgaagagaaaccattgttcagattctggctcttatatggctttag
ACAAGTTAGCTCCCTGGGCCTCAATTTCCTCTTCTGTAAAGAAGAGAACACAAAATGTGT
GTGAGATAGAAGATGTGCAACAAGTTAGTTCCCTGAGCAGATCCTTGGCTGGATCCTCTT
ATGTGACAGAGGCCCAG
gtaagatttggaggcatggggaggctggtgaccttgcaggtgacttcacttactaggtct
ttttccctgacgttgaggatcatgccacacatgagcaacagtgcctctacagaaatatcc
aatgttgtaatgactgatgttgcagtgagctgtgttggctgggggacttaccaggtatta

Exon  3 +       8747       8871   0   Internal    125   100   Excellent
gaagattgaggcaggagaatctcttgaacctgggagacggaggttgcagtgagccgagat
catgccactgcactctagcctgggcaacaaagactacatctcaaaaataaataaaaaata
aataaaataaataaatttaattctggaagctacacatgtttttcccatttttttaggcag
CTTCGAACCAGTGCAATGACGATGCCAGTCAACGGGGCCCACAAGGATGCTGACCTGTGG
TCCTCACATGACAAGATGCTGGCACAACCCCTCAAAGACAGTGATGTTGAGGTGAGATTT
TTGGG
gtcttcacagatttttttatgttggaggccttcatttaatctttagttctaattacaaat
taattagggacagccttgaaatgagtattatcctgctggatttagaggtggtggcagaca
aaatggctacaaatcctttgagggtaaatttaaagattgctgggtttcttcaaagtgtgg

Exon  4 +      16303      16424   2   Internal    122    81        Good
tccagaggcattggtggaacacttgatcatgctggcttcagcatctgcatgttaacaagc
tcttctcattacttctctccactttagtttcactgtcccacccctaagcttctttggcct
ctgtgaagcacagactttctgggtctgagtggatctaagtctcctgctcttctcccacag
ATACTATGGCGGGACTGAGTTTATTGATGAACTGGAGACCCTCTGTCAGAAGCGAGCCCT
GCAGGCCTATAAGCTGGACCCACAGTGCTGGGGGGTCAACGTCCAGCCCTACTCAGGTGC
TT
gtctcatccatatggcctggtgcagcctcttcatgtgcatcccccagggccgacatgcac
caagaagagtcctaagatggactgccatggactgccataggccgggcccagtggctcacg
cctgtaatcccagcactttgggaggcggaggcaggcagaccacctgaggccggcagttca

Exon  5 +      17087      17257   1   Internal    171   100   Excellent
tgccctctctctgaacttcacctctcaaggctggtggtgaaggggcacctcctggagctc
agggaaggtacaaggcctgttctcgccactcctgggtgaaggcttagtggccaaggtccc
ggatgccacttggtacctcagttagaaataatcatgtctcctctggtccactcgtttcag
GCTCCCCTGCAAACTTTGCTGTGTACACTGCCCTGGTGGAACCCCATGGGCGCATCATGG
GCCTGGACCTTCCGGATGGGGGCCACCTGACCCATGGGTTCATGACAGACAAGAAGAAAA
TCTCTGCCACGTCCATCTTCTTTGAATCTATGCCCTACAAGGTAAGCATGT
gtttctctcctagcttttatttccttgggaaacctctgatgcttggctgtgcctgcaggg
gtaagtttggtttatgtgtcactacaggaagtccccacctcgcaccgtttttaatttcct
tgcagcggggactcctcaggttttcaggacccgctggggcagctgggatggagagacgag

Exon  6 +      20624      20655   1   Internal     32    63    Marginal
gaaccacacccctgaagcaaaacacagcaaacaaaaccacaaatcatctttcagcttgac
tttctagatgaggtcttggttcccgaaaccttgtggcaagcttctatagttgggttggat
tataactgcctttttttatttggaaagagtgaccaccaatcctgaaacctttcactccag
ATGTGCTGGTAGTTTCTGAGGGGGACACCAAG
gtaagaggaaggaaggttgggtcagggccttcagaacagggagcctctctgcacatctcc
tcttccctgaggcttctcagatcccagagcccagtttttcctgtggtgcgctctatgctc
tgctggttatgtgtgcttacccatgactttttttttttttttttttttaagacagtatct

Exon  7 +      23930      24011   0   Internal     82   100   Excellent
tgtgagccatacttggttgagcaggctgaacacaccagtatccatcctgtctcaccctca
agtcctcatctaggacatcattcctcttgtcatggtgggtggagccagttcaagtgggag
gacaggaggcaggtgtggttggaggaagcagcctgaacctgcctccctgacattccacag
GTGAACCCAGATACTGGCTACATCAACTATGACCAGCTGGAGGAGAACGCACGCCTCTTC
CACCCGAAGCTGATCATCGCAG
gtgatgcgcggggcggaaagtcaccttgttcaccagtagcctggtgcctcttacagaatg
aggatggaaagatgttcgcaccctgttgagcccactgctagtttctgccctggataactg
agtttctggggtctacatatattagtttctttcaggatacagatgtgtgtttgctgcttt

Exon  8 +      24488      24700   1   Internal    213   100   Excellent
gttagagtggttgcctttagcacagaggtgctttttgagggcattctccatttttgctct
gagactttaagggaagaaatctctgggctttcagatctgcacatctagaggccactgtga
agccaactcagctggccggtggacatctctgatgcagctgtgtcacctttcctgtctcag
GAACCAGCTGCTACTCCCGAAACCTGGAATATGCCCGGCTACGGAAGATTGCAGATGAGA
ACGGGGCGTATCTCATGGCGGACATGGCTCACATCAGCGGGCTGGTGGCGGCTGGCGTGG
TGCCCTCCCCATTTGAACACTGCCATGTGGTGACCACCACCACTCACAAGACCCTGCGAG
GCTGCCGAGCTGGCATGATCTTCTACAGGAAAG
gtgagctcccgaatgttgggtacagatgggtaccatggtttacatttctcctgtgggggt
tcagattcagttgagggagctgggaaaaactctgacctgggatccttggaaaatattaag
atcccagtcccttaaagagctgcttaggaaggagcagtgacaggctttacagaaaggatt

Exon  9 +      29068      29184   1   Internal    117    92   Excellent
ctggtctgccctcaggaggcaagggtcccctctgctccgctgtgttacaaatcagttctc
catgccaggataaaggccaggcttgtgcttgattcttccctggccagtctgggtttgagc
ctaaaaagaaaaagaggggacagcccctatgatcccactgtgatgtttttcttcctccag
GAGTGAAAAGTGTGGATCCCAAGACTGGCAAAGAGATTCTGTACAACCTGGAGTCTCTTA
TCAATTCTGCTGTGTTCCCTGGCCTGCAGGGAGGTCCCCACAACCACGCCATTGCTG
gtaaaacatcatctgcctctgctcatcctgtagcccctaattcccatcccacctgtcctc
caaaatcgtgtgccaggacttccacgctggggaaaaagctggagggctgtctctgtgcag
gagatgctaacacagagtagggcatggttgagactggcctaaggtagggacagtagggaa

Exon 10 +      31455      31577   1   Internal    123    94   Excellent
taataaataataaaaaatttttaaaaatatatcattttggaggaaaagataatccaacgc
aaaagcaaggggtgacattgaaaagcaaggaagcttgagtaaaaacaggaatgttgtttg
actcatcatctgtgtatgattctatcctagcctcctgacccattgtctcttcttgtccag
GGGTTGCTGTGGCACTGAAGCAAGCTATGACTCTGGAATTTAAAGTTTATCAACACCAGG
TGGTGGCCAACTGCAGGGCTCTGTCTGAGGCCCTGACGGAGCTGGGCTACAAAATAGTCA
CAG
gtagagacacagatggtgttcagcaggcctgttcttgtggttgtattaaggcttgcttct
cagtttgtgcaaccaggatgtggcccaggctctgctgctgcagctgcaatgatgggccca
ccttgggaggaggtcagcctcgcctccaactggaaagcctccccctgcctcagaccagcc

Exon 11 +      34072      34188   1   Internal    117    85        Good
tttcacattcttaggcacgggcatctctcgtggggattagaatcccaggccatgtggtgg
gggtgctcaccttcctgacctcatctgctttgactgccttcatcctcgccttcgtttctc
agagattccttcacggcatagaattcgcctgcatttctacatgtccaactttgtttccag
GTGGTTCTGACAACCATTTGATCCTTGTGGATCTCCGTTCCAAAGGCACAGATGGTGGAA
GGGCTGAGAAGGTGCTAGAAGCCTGTTCTATTGCCTGCAACAAGAACACCTGTCCAG
gtgagaatcatccttgccttctccttcactcctctcccatctgcatttcttctggccaaa
gttgtagctgatgaatatattggctccggggacagacctcacataaaaactgtagtgggg
gctgggcacggtggctcacgcctgtaatcccggcactttgggaggccgaggcaggcggat

Exon 12 +      34960      35016   1   Internal     57    91   Excellent
cttgaacccaggaggcagaggctgcattgagccgagactgcgccactgcactccagctta
ggcgacagtgagactccgtctcaaaaaaacaaaaacaaaaacaaaaaatggagcgggggc
agggaccataccttggctgtctcttggctgtgcctttgtacttggccctgaccctgccag
GGAGCAAAAAGACTGATGTAGAGCTGTTGGAGGTGGTACATTCATCAGATGAGGGAG
gtcagggcctccggaatccagaggctgcatttctctgtgggttgttaacaaaatattgat
gacgcatctcagacccagacagatgttaccctcatttttaggagcaaggggcacatcaga
ccactttgtgtactagtaattaagtcagagtggccaaacgtggttgtgcctccttgtgcc

Exon 13 +      35824      35993   1   Terminal    170    94   Excellent
tgcccaggacatctgtccaagggtgggtgcatctcagagtaattgaggtaagcatggaga
ccttgtgccctgccacactccccagctgggggacattctgacatttgtgcctcggccccc
agccattgtaccccctttggtgtgtagtgtggggtgactcatttgtgtcttgtggcacag
GGATAGAGCTGACCCTGCAGATCCAGAGCGACACTGGTGTCAGAGCCACCCTGAAAGAGT
TCAAGGAGAGACTGGCAGGGGATAAGTACCAGGCGGCCGTGCAGGCTCTCCGGGAGGAGG
TTGAGAGCTTCGCCTCTCTCTTCCCTCTGCCTGGCCTGCCTGACTTCTAA
aggagcgggcccactctggacccacctggcgccacagaggaagctgcctgccggaggacc
cccacctgagagatggatgagctgctccaaaggggaactgttgacactcgggccctttga
gggggtttcttttggacttttttcatgttttcttcacaaatcaaaatttgtttaagtctc

Exon 14 +      36921      37039   2   Internal    119    63    Marginal
accatttttaataagcacaatcaaatttttaaccacagaatgtctacaagaattatagct
ttaaaaaatacaaccaatttttatatttcaaaaatatttgaactcaaataaattaatttc
ttaaaaagtacacttctcatactatgtgtttggcattgactctggttaactcttgtgcag
CAACACCTACGAGATGCTATCACACACGCGCCAGCTGCACTCCTGCACCAGCCGCTGCAA
CGACTGCACCTCACGTGGTGGCGGGGACTCACATTCACAAGACGGGACGGGAACATGCA
gtaataaaatagctttttaaaaaataacacatataaattcatcacataggattatgcttt
tcactgcaaccttgaaggtggcatttatctcaatctgtgactccagctatttagtggcag
acaatcccggtgaggcagcctgtggtcccaccttgtaggtggcagcccctgcaatctggg

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