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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (4621 bp)
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PERCEVAL Exon Candidates (3 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1423       1624   0    Initial    202    79        Good
tgtctgcagcccggacactaagggagatggatgaatgggtggggaggatgcggcgcacat
ggccccgggcggctcggcggtcagctgccgcccccacagcggaccggtcggggcgggggt
cgggcggtagaaaaaagggccgcgaggcgagcggggcactgggcggaccgcggcggcagc
ATGAGCGGCGCAGACCGTAGCCCCAATGCGGGCGCAGCCCCTGACTCGGCCCCGGGCCAG
GCGGCGGTGGCTTCGGCCTACCAGCGCTTCGAGCCGCGCGCCTACCTCCGCAACAACTAC
GCGCCCCCTCGCGGGGACCTGTGCAACCCGAACGGCGTCGGGCCGTGGAAGCTGCGCTGC
TTGGCGCAGACCTTCGCCACCG
gtgagcgggggaaactgaggcacgagggacaagaggtcgtcggggagtgaaagcaggcgc
agggaaataaaaagaaggaaagggagacagaccaggcgcctaacagatggggaccaagaa
acaagagatagctgagaggtgcaaacagaagagaaaaaagagcaacatcccttaggagag

Exon  2 +       2576       2783   1   Internal    208   100   Excellent
ccatgttggagctgggttcagtctaactctggggccaatgctttttccagatggagacac
atttgcagaggagaaggaagaactagagagaggcagggagatgcaggggagggaagggta
aggaggcaggggctgcctgggctggctggcaccaggaccctcttcctctgccctgcccag
GTGAAGTGTCCGGACGCACCCTCATCGACATTGGTTCAGGCCCCACCGTGTACCAGCTGC
TCAGTGCCTGCAGCCACTTTGAGGACATCACCATGACAGATTTCCTGGAGGTCAACCGCC
AGGAGCTGGGGCGCTGGCTGCAGGAGGAGCCGGGGGCCTTCAACTGGAGCATGTACAGCC
AACATGCCTGCCTCATTGAGGGCAAGGG
gtaaggactggggggtgagggttggggaggaggcttcccatagagtggctggttggggca
acagaggcctgagcgtagaacagccttgagccctgccttgtgcctcctgcacagggaatg
ctggcaggataaggagcgccagctgcgagccagggtgaaacgggtcctgcccatcgacgt

Exon  3 +       2898       3336   2   Terminal    439    84        Good
ggaggagccgggggccttcaactggagcatgtacagccaacatgcctgcctcattgaggg
caaggggtaaggactggggggtgagggttggggaggaggcttcccatagagtggctggtt
ggggcaacagaggcctgagcgtagaacagccttgagccctgccttgtgcctcctgcacag
GGAATGCTGGCAGGATAAGGAGCGCCAGCTGCGAGCCAGGGTGAAACGGGTCCTGCCCAT
CGACGTGCACCAGCCCCAGCCCCTGGGTGCTGGGAGCCCAGCTCCCCTGCCTGCTGACGC
CCTGGTCTCTGCCTTCTGCTTGGAGGCTGTGAGCCCAGATCTTGCCAGCTTTCAGCGGGC
CCTGGACCACATCACCACGCTGCTGAGGCCTGGGGGGCACCTCCTCCTCATCGGGGCCCT
GGAGGAGTCGTGGTACCTGGCTGGGGAGGCCAGGCTGACGGTGGTGCCAGTGTCTGAGGA
GGAGGTGAGGGAGGCCCTGGTGCGTAGTGGCTACAAGGTCCGGGACCTCCGCACCTATAT
CATGCCTGCCCACCTTCAGACAGGCGTAGATGATGTCAAGGGCGTCTTCTTCGCCTGGGC
TCAGAAGGTTGGGCTGTGA
gggctgtacctggtgccctgtggcccccacccacctggattccctgttctttgaagtggc
acctaataaagaaataataccctgccgctgcggtcagtgctgtgtgtggctctcctggga
agcagcaagggcccagagatctgagtgtccgggtaggggagacattcaccctaggctttt

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