-------------------------------------------------------------------------------- GrailEXP v3.31 [March, 2002] http://compbio.ornl.gov/grailexp/ Authors: Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and Edward C. Uberbacher, 1996-2001 Reference: "Automated Gene Identification in Large-Scale Genomic Sequences", Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4, Number 3, 1997 Sequence: >GrailEXP Input Sequence (7014 bp) -------------------------------------------------------------------------------- PERCEVAL Exon Candidates (7 predicted) Index Std Begin End Frm Type Len Scr Quality Exon 1 + 1616 1786 0 Initial 171 78 Good tctgggggagcctgcgggctggggggcggctatggcggtggcttcagcagcagcagcagc agctttggtagtggctttgggggaggatatggtggtggccttggtgctggcttgggtggt ggctttggtggtggctttgctggtggtgatgggcttctggtgggcagtgagaaggtgacc ATGCAGAACCTCAATGACCGCCTGGCCTCCTACCTGGACAAGGTGCGTGCTCTGGAGGAG GCCAACGCCGACCTGGAAGTGAAGATCCGTGACTGGTACCAGAGGCAGCGGCCTGCTGAG ATCAAAGACTACAGTCCCTACTTCAAGACCATTGAGGACCTGAGGAACAAG gtgggtgaatgggcagcagaaggcaccattccagctagctccttctgggaacaattcatg ccccaggcccctgagaccttaagatttctctataggacagagtccaccccagatcccttc tttcgaggtcttggatgccctaagactgatcagtgagaagatgctttcccttccccagcc Exon 2 + 3039 3121 0 Internal 83 100 Excellent tagcaaagtcttaggacaggcctggggcatctgttttcctttgggctgctatggtcaagt tttgtgggggaaaagggggattcaggcaagaacatgaagcaagagcttaatgtaggctac agtgaagtccagcttgtgaagtccatttgacaaattacctgtgccttttccatcctgcag ATTCTCACAGCCACAGTGGACAATGCCAATGTCCTTCTGCAGATTGACAATGCCCGTCTG GCCGCGGATGACTTCCGCACCAA gtgagtttgaaatggtgggccagaacatccagtgtccccagagtagggcatttttggagc agtgtttcccaaatagaactagccagtaccaggataggtgcatgaaaactccctggggtg cttataaaagaataagactcttgggccccacccttggagttttgattcagctatttatag Exon 3 + 3683 3839 2 Internal 157 100 Excellent gcaggaatgttcatatctgagcaatcaatgggcactgtgttcaaccacgccattttcaag attggctccttaaaccacccacaaggcaccagctctgggagaagctgcagggagaagaga acaaagccctcgctgtgatcaggatgggtgtctcataccttttctctggggtcattccag GTATGAGACAGAGTTGAACCTGCGCATGAGTGTGGAAGCCGACATCAATGGCCTGCGCAG GGTGCTGGACGAACTGACCCTGGCCAGAGCTGACCTGGAGATGCAGATTGAGAGCCTGAA GGAGGAGCTGGCCTACCTGAAGAAGAACCACGAGGAG gtgagaactatatggaaaagtcagcttaaaagaaatgcagggaggctgggtacagtggtg cgtgcccatagtcccagctacttgggaggctgagacaggaggatcacttgaacacaggag tttgagtccagcctgggcaacaaggctagaccctgtccaaaaaaaaaaaaaaaaaaaaaa Exon 4 + 4175 4336 0 Internal 162 91 Excellent tccaaaaaaaaaaaaaaaaaaaaaaaaaaaaagagagagagagagagagattgagagaga gagagagaagggagagtcgagatagaattgtgatggtgggagggcagtattcaggcctaa ggaacaccaatccgctgccatggtggaactcctgactgtggactgtccctggctgtgcag GAGATGAATGCCCTGAGAGGCCAGGTGGGTGGAGATGTCAATGTGGAGATGGACGCTGCA CCTGGCGTGGACCTGAGCCGCATTCTGAACGAGATGCGTGACCAGTATGAGAAGATGGCA GAGAAGAACCGCAAGGATGCCGAGGAATGGTTCTTCACCAAG gtgggtgtcatttgaggtggaaggaacccagaccacctgccttctggggccttctggtgt gaatggcattctcttttttgcagacagaggagctgaaccgcgaggtggccaccaacagcg agctggtgcagagcggcaagagcgagatctcggagctccggcgcaccatgcagaacctgg Exon 5 + 4420 4569 0 Internal 150 100 Excellent cgtggacctgagccgcattctgaacgagatgcgtgaccagtatgagaagatggcagagaa gaaccgcaaggatgccgaggaatggttcttcaccaaggtgggtgtcatttgaggtggaag gaacccagaccacctgccttctggggccttctggtgtgaatggcattctcttttttgcag ACAGAGGAGCTGAACCGCGAGGTGGCCACCAACAGCGAGCTGGTGCAGAGCGGCAAGAGC GAGATCTCGGAGCTCCGGCGCACCATGCAGAACCTGGAGATTGAGCTGCAGTCCCAGCTC AGCATGGTAGGAATAGTGCCAGGAAGGGTG gtgcacccaggactggcagggagagaacggccacactcactaatcgttgattccctttcc ctccctcacagaaagcatccctggagaacagcctggaggagaccaaaggtcgctactgca tgcagctggcccagatccaggagatgattggcagcgtggaggagcagctggcccagctcc Exon 6 + 4641 4861 0 Internal 221 100 Excellent ggtgcagagcggcaagagcgagatctcggagctccggcgcaccatgcagaacctggagat tgagctgcagtcccagctcagcatggtaggaatagtgccaggaagggtggtgcacccagg actggcagggagagaacggccacactcactaatcgttgattccctttccctccctcacag AAAGCATCCCTGGAGAACAGCCTGGAGGAGACCAAAGGTCGCTACTGCATGCAGCTGGCC CAGATCCAGGAGATGATTGGCAGCGTGGAGGAGCAGCTGGCCCAGCTCCGCTGCGAGATG GAGCAGCAGAACCAGGAGTACAAGATCCTGCTGGACGTGAAGACGCGGCTGGAGCAGGAG ATCGCCACCTACCGCCGCCTGCTGGAGGGCGAGGACGCCCA gtgagtcttggccctccccttagtccgccccccccatggcactctcacggccccaccatg tatctaatgatcctgtccttttctattttcacagcctctcctcctcccagttctcctctg gatcgcagtcatccagagatggtaagaccctcctcctctgcaggcctgggctccaggcca Exon 7 + 5577 5661 2 Terminal 85 94 Excellent gtgttgatggtatcagtgcttgggcaacagcagggagtgaagcagtaatcaggggagagg gcaatggggagccagtttgagtttcctcaccttcttggcctccttactcctgattagtcc attgtctgtccacctctggtaacgtcctcttcccacctcttccccagtgacctcctccag CCGCCAAATCCGCACCAAGGTCATGGATGTGCACGATGGCAAGGTGGTGTCCACCCACGA GCAGGTCCTTCGCACCAAGAACTGA ggctgcccagccccgctcaggcctaggaggccccccgtgtggacacagatcccactggaa gatcccctctcctgcccaagcacttcacagctggaccctgcttcaccctcaccccctcct ggcaatcaatacagcttcattatctgagttgcataattctcgcctctctctggtcattgt --------------------------------------------------------------------------------