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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (4334 bp)
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PERCEVAL Exon Candidates (3 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1279       1729   0    Initial    451    78        Good
tgagcagatttccttatccgggaatcgcaggcggggcggccattggctcggaggatcacg
tgggcgcctaactttgttcacttgacagtaagtaggagggctttcggaaacaggaaaacg
agtcaggggtcggaataaattttagtatattttgtgggcaattcccagaaattaatggct
ATGAGTTCTTTTTTGATCAACTCAAACTATGTCGACCCCAAGTTCCCTCCATGCGAGGAA
TATTCACAGAGCGATTACCTACCCAGCGACCACTCGCCCGGGTACTACGCCGGCGGCCAG
AGGCGAGAGAGCAGCTTCCAGCCGGAGGCGGGCTTCGGGCGGCGCGCGGCGTGCACCGTG
CAGCGCTACGCGGCCTGCCGGGACCCTGGGCCCCCGCCGCCTCCGCCACCACCCCCGCCG
CCCCCGCCACCGCCCGGTCTGTCCCCTCGGGCTCCTGCGCCGCCACCCGCCGGGGCCCTC
CTCCCGGAGCCCGGCCAGCGCTGCGAGGCGGTCAGCAGCAGCCCCCCGCCGCCTCCCTGC
GCCCAGAACCCCCTGCACCCCAGCCCGTCCCACTCCGCGTGCAAAGAGCCCGTCGTCTAC
CCCTGGATGCGCAAAGTTCACGTGAGCACGG
gtgagtgcgtgggcaccccttccccctcccacccctggagctttacaccaaagggacttc
ggaggcatgggttgggggggggttgagctggggaagccaattgtccccgctataaactcg
ccattgccggagatttacggtcgcctgttttcagagccacataattacatcccccataaa

Exon  2 +       1992       2062   1   Internal     71    56    Marginal
ttgagctggggaagccaattgtccccgctataaactcgccattgccggagatttacggtc
gcctgttttcagagccacataattacatcccccataaatttttatggcctggtgggccct
gcgcctttgaagtaggttccccatcctcttcaccattctcaccagcgactttttcgccag
GGAGATACAGTCTTAATGAAGTTGGAAGTTGGGGAGGGGTGGAGGAGGTGGAGGAGGAGA
AGGAGGAGGAG
gtaatccgtatttaagcagagagttgagtcaactcccagtatttattttttcctttcttc
cagtctgactccttggctggagaagtgagcaaaagttttcagtaggggtaggcactgctt
ggaatctgagcagcaagggtgggaactaaacagaggaaaggtttagggaaacctcccctc

Exon  3 +       2572       2870   1   Terminal    299   100   Excellent
tctctttctcattcttgggtcttgcattcttcccttttcgtttttccccgctctccctca
gaaggaagaagaggtggcgggagagggagggagggaaacgctgtgttccctggaagaaag
gactctctctttcgggggcaataaaactttctctttctccctctctccgtgtgtgtccag
TAAACCCCAATTACGCCGGCGGGGAGCCCAAGCGCTCTCGGACCGCCTACACGCGCCAGC
AGGTCTTGGAGCTGGAGAAGGAATTTCACTACAACCGCTACCTGACACGGCGCCGGAGGG
TGGAGATCGCCCACGCGCTCTGCCTCTCCGAGCGCCAGATCAAGATCTGGTTCCAGAACC
GGCGCATGAAGTGGAAAAAAGACCACAAGTTGCCCAACACCAAGATCCGCTCGGGTGGTG
CGGCAGGCTCAGCCGGAGGGCCCCCTGGCCGGCCCAATGGAGGCCCCCGCGCGCTCTAG
tgcccccgcacgcgggagccacgaacctcggggtgggggtgggcagtgagtgcaggggat
ggggtggggggacaggagggggccctggggcctgggccccggaaaaatctatctgccctc
ccccacactttatatacgaataaacgcagaagagggggaggggaagctttatttatagaa

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