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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (48320 bp)
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PERCEVAL Exon Candidates (6 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1244       1558   0     Single    315    79        Good
ctggcccgccctgcccggcccgccctgcgagtcagttcgctggttccctccctccctggg
cgcgctcgggccgccgccgcgctccccgccctcgagcctcggtgccggagccgcccgccg
ccggaggaggaggtggagggagccggaggggcccgccgaggcggcggcggcggcggcaag
ATGGCGGACTTCCTGCCGTCGCGGTCCGTGCTGTCCGTGTGCTTCCCCGGCTGCCTGCTG
ACGAGTGGCGAGGCCGAGCAGCAACGCAAGTCCAAGGAGATCGACAAATGCCTGTCTCGG
GAAAAGACCTATGTGAAGCGGCTGGTGAAGATCCTGCTGCTGGGCGCGGGCGAGAGCGGC
AAGTCCACCTTCCTGAAGCAGATGCGGATCATCCACGGGCAGGACTTCGACCAGCGCGCG
CGCGAGGAGTTCCGCCCCACCATCTACAGCAACGTGATCAAAGGTGCCGGGCCGGGAATG
GGGGCCGGGGGTTAA
gggcaggggggctggggcggcggcgggtgcggggcggggcaccgccctggtccgctgtgt
cgctggcgaaggaacgggcccggcgggcgggctggcgggaagggggcgcgccccggcaac
tggccctgcccgcccggggtgccctcgcgccccagggcgagaggatgctcggggtcgccc

Exon  2 +       4111       4335   0    Initial    225    87        Good
aactgttattttttttaacctctgagaagttacatttgttttcgatgttggtcttcattt
ttgaagaaggtttgtctaggttaattcagaagtataaggaaataatactggaataaaaac
ttatgataatatgtaatgactcctctccatacattttttttcttctttttaaacaaaggt
ATGAGGGTGCTGGTTGATGCTCGAGAGAAGCTTCATATTCCCTGGGGAGACAACTCAAAC
CAACAACATGGAGATAAGATGATGTCGTTTGATACCCGGGCCCCCATGGCAGCCCAAGGA
ATGGTGGAAACAAGGGTTTTCTTACAATATCTTCCTGCTATAAGAGCATTATGGGCAGAC
AGCGGCATACAGAATGCCTATGACCGGCGTCGAGAATTTCAACTG
gtaagagatttgctcttttaaaacgtgtggttttattttaatgatgtttagtaatacagg
ttgcacatccctaatgcgaaaattcgaaatgttcccaaatctaaaagtatttgagatgga
ggaacagactgaaaggctaaggcacagacctaatgtgtcctagtctctaatgactacgtg

Exon  3 +      20286      20561   0    Initial    276    66    Marginal
tcgaactcctgggctcaagcagtctgcctctctcggcctcccaatgtgttgggattgcag
gtgtgagccactgtgctcagtctgacagtagagtcttgagaaatctctacatcttttgag
aatgttcagaggaggagatcctagcagaagtggccagaaaggtaggagaaatgtaggcac
ATGTCACGTCATGGAAGCCAGGAAAGTGTTTCAAGAAGAAAAAAGTGGTCAGTGGTGTCC
TGTGCCATTGAGAGGTCTAGGAAGAATTCTAGGAAGAATCGATGTTGGCACAGGAAAGTT
GGATATGCTGACTATGGCAGCAGGTGCCCTGGTGAGGGAGAGGCCAGCCTAGAAGGGCTT
AAGAGGAGAGAGAGGCGAGGAAGTGGAGAAGATTCAGTTGAAGTCAAGCTCACTGTTCTC
TTTTCCCTTTTACAGTACTTTCAACCCTCTGGCTTA
gtaagttgtggtttttctgacctttttaaagtttgagaggacattttatttatattaacc
aatttatttgaatttcagtctcagaagtattaaatattagttcataagattgttaatctg
ctgggtcaggcaaatacagaagagtttttcactttattcttgattattttacttatgatc

Exon  4 +      29009      29067   1   Internal     59    52    Marginal
cagtattatatcagtaactctgcctcctttttttttctttttctttttctttttgtttct
acctcctttttaagaaacaaaatccatagtattcctctttaaggaaactgtcacctactt
ggggaaggctagattctagagactgcatgtagaggctgtagctctctggaaggtgtgtag
GTGGGGGAAGTGGAGGCTGCAGATTGGAAGAAGAAGGTGGTGTGGAGCTGAAGAGTAAA
gtagggaggcaggaattagagatagtttgatctgtattccttgactttcatctttcttgg
tgacctgaaagttgcttaaggttgtggcgctatcatcctagtgttgaggccaagacaagt
gatctgcagtcatacctctcatgacacatgaaacagtcttcttaggctcaagtatttcat

Exon  5 +      39534      39584   0   Internal     51   100   Excellent
tagcagtctgtgacagagcagacgttttatatgtttttaggaaggttagctgtctgaaat
tggtgactaaacaaagtctgtttgggttaagtgtacaaccagacagtatgatgtaaactg
ttgtaacaagatcttccatttctaagccctaataactatttgttttcttcttgtttttag
GGTGAATCTGTAAAATATTTCCTGGATAACTTGGATAAACTTGGAGAACCA
gtaagtgtttaaaccaaatgtttatgtttagtgccatttgaaagcagaagtcaggatatc
gatgttaggaaatttagaaaaattatgtattaagctatttgcttctttctctcttttttt
ttttttttttttttttttttttttttttttttttttttttagtggtggcgttctgattct

Exon  6 +      43008      43576   0   Internal    569    92   Excellent
taggcatgacccaccatgtctgaccagtcttggcattttataataagcataatctatctg
aaaatgtcacttaaaagatcattttgtttgcatatctattcactagtccagttagtagtc
cattaaaaattcgcattacttcgggattaataggtataaaacaagttttttcttttccag
GATTATATTCCATCACAACAAGATATTCTGCTTGCCAGAAGACCCACCAAAGGCATCCAT
GAATACGACTTTGAAATAAAAAATGTTCCTTTCAAAATGGTTGATGTAGGTGGTCAGAGA
TCAGAAAGGAAACGTTGGTTTGAATGTTTCGACAGTGTGACATCAATACTTTTCCTTGTT
TCCTCAAGTGAATTTGACCAGGTGCTTATGGAAGATCGACTGACCAATCGCCTTACAGAG
TCTCTGAACATTTTTGAAACAATCGTCAATAACCGGGTTTTCAGCAATGTCTCCATAATT
CTGTTCTTAAACAAGACAGACTTGCTTGAGGAGAAGGTGCAAATTGTGAGCATCAAAGAC
TATTTCCTAGAATTTGAAGGGGATCCCCACTGCTTAAGAGACGTCCAAAAATTCCTGGTG
GAATGTTTCCGGAACAAACGCCGGGACCAGCAACAGAAGCCCTTATACCACCACTTCACC
ACTGCTATCAACACGGAGAACATCCGCCTTGTTTTCCGTGACGTGAAGGATACTATTCTG
CATGACAACCTCAAGCAGCTTATGCTACA
gtgatgtacaaaagacttgctgttttaatatctttttgtgtttttgatgttttctgtttg
ttttgttttttaaaatagcagtttacaaccagaattagaacaatcttaattctacgttta
acttcttgaaaatcttagtactttttctgcggcctttggtttgtggctgaaagctgttga

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