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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (12437 bp)
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PERCEVAL Exon Candidates (4 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       2562       2647   0    Initial     86    79        Good
actcccacctggacgacagagcgagactccatctcaaaaaaaaaaaaaaaaaagaaaaag
gaaaagaaagggtccaaacctcagggctttgcccctctccagctttcagaacccctactg
gttgctctctcaacatgtcctggcttttttctgtcttagctcaggaaataaccttggaag
ATGGTGGCCACGAAGACCTTTGCTCTGCTGCTGCTGTCCCTGTTCCTGGCAGTGGGACTA
GGAGAGAAGAAAGAGGGTCACTTCAG
gtaggagtggtgagaggaaagggatggggcagaggaggggttaggggatgacaggttctg
gatttgtttctagggggagatgagaaagggaaggaatccaggctaagaggtaggaagctc
cagggaaatacctgccggcagcgtgagtgcaaagtgagcactgagccagagaggatttat

Exon  2 +       5380       5484   2   Internal    105    97   Excellent
ataaaaacggactggtttgttttcaagtgtctgcctcctgttagtgacagtcatttaccc
tagcattgtgattctccccccatctctgccccttctccgcacccttgtttccagcgctct
cccctccctgcctgttggatctcatgctaaggtgagcagccctcaacctcgaggccccag
GTACGCGGAAGGGACTTTCATCAGTGACTACAGTATTGCCATGGACAAGATTCACCAACA
AGACTTTGTGAACTGGCTGCTGGCCCAAAAGGGGAAGAAGAATGA
gtgagtcgctgcttacactcctcctgttccctgtgccgggctctgccttcctaccttcag
aggaggccaccggctgtggccacacaggccacatgatgcacaaccccaggtggcaccttt
ctttttcttttcttttttttttttttttttgagatggagtctcactctttcgcccaggct

Exon  3 +       7975       8067   2   Internal     93   100   Excellent
tggtcagcacggtagattctgaaaagctgttcactggtggaggcagctgaagaccactgt
taggtggggttgagtggaaaaaggtaccctctgcttttggggttcagatattaaaagatt
caagtgtccctagactggagtctccgcagcttgcccactctctaatctttatcttcccag
CTGGAAACACAACATCACCCAGAGGGAGGCTCGGGCGCTGGAGCTGGCCAGTCAAGCTAA
TAGGAAGGAGGAGGAGGCAGTGGAGCCACAGAG
gtgagtcagggcgcagagggaagggagggagccaagcctcctgccccgcccccacctctt
tgttccctctccctgaccccagagcagagcaaggacctgagataagcatcctcttcctct
cagagttcaaagaggggtcttcattgagcaaactcctggaggtcagcccaagcttaagga

Exon  4 +       8807       8908   2   Internal    102    89        Good
gctgggtggggctggcagaaaggaggctccagatctcagagctgagccaacggagagata
gctgtgtcggctccctccccccatccgcggctgcccctcagtggtgtccccaaccctgtg
tttaccctctctgggcgaagctcaggctaaaatagttagccagagactgttcccttgcag
CTCCCCAGCCAAGAACCCCAGCGATGAAGATTTGCTGCGGGACTTGCTGATTCAAGAGCT
GTTGGCCTGCTTGCTGGATCAGACAAACCTCTGCAGGCTCAG
gtaggggagtgtggtgttgcacagcggttctaacttgagcttgggcatcagacatggatt
cagatctttgcccctccacatgctggctgattacatagcctttctgaacctcagtgtttt
cactaaaatcagaggtatagaatcatttcacaggattgttgtcagctttaagtaagagaa

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