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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (6862 bp)
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PERCEVAL Exon Candidates (4 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +        595        662   0   Internal     68    55    Marginal
ccgccaccctgagacccctcaggggcgggtcctgaccactagggttggggatgagggatg
gagatatttcggggcgatgaaggaggggggatggtgcgactgtgcttgtggcctgtggtt
tccaggtgtgtttgccattcctgtgggccactctcccccacttcccacttctctgcttag
CCTTCAGCGGTGGAAAAAGGGGATGAGGGCGCCGGCGACAGAAACGCAAGCGGGGTTGGA
AGAGAGGG
gtgggggcgcgcccgagggtggggaaggagctcgggtctacccagggccagcttcggcgc
gtcgagtctgaagtgggagaccgacgccggggcggctctcacgctcggcaggcgccgcac
aagcgcccctttaaagcgcaggcagctggcccaccgcagggagacgcatccagctgtccg

Exon  2 +       1376       2123   2   Internal    748    89        Good
tggcctcgatgctccacgtaggagctggctcggctgccggctgcggtcagggccaccgta
taaagagggcggcagacccgagcgcctaggactcgccgctgcccgcgccccgccgccgct
gctgcccccagccccggccccaggcgtcccagccatggtccgcccaatgctcttgctcag
CCTCGGCCTCCTGGCTGGTCTGCTGCCGGCGCTGGCCGCCTGCCCCCAGAACTGCCACTG
CCACAGCGACCTGCAGCACGTCATCTGCGACAAGGTGGGGCTGCAGAAGATCCCCAAGGT
GTCAGAGAAGACCAAGCTGCTCAACCTACAGCGCAACAACTTCCCGGTGCTGGCTGCCAA
TTCGTTCCGGGCCATGCCGAACCTCGTGTCATTGCACCTGCAGCACTGCCAGATCCGCGA
GGTGGCCGCCGGTGCCTTCCGCGGCCTCAAGCAACTTATCTACTTGTACCTGTCCCATAA
CGACATCCGCGTGCTGCGCGCAGGTGCCTTCGACGACCTGACCGAGCTGACCTACCTCTA
CCTGGACCACAACAAGGTCACTGAGCTGCCCCGGGGGTTGCTCTCCCCGCTGGTCAACCT
CTTCATCTTGCAGCTCAACAACAACAAGATCCGTGAGCTGCGCGCAGGCGCCTTCCAGGG
AGCCAAGGACCTGCGCTGGCTCTACCTGTCGGAAAACGCGTTGAGCTCCCTGCAGCCCGG
GGCCCTGGACGACGTGGAGAACCTCGCCAAATTCCACGTGGACAGGAACCAGCTGTCCAG
CTACCCCTCAGCTGCCCTGAGCAAGCTACGGGTGGTGGAGGAGCTGAAGCTGTCCCACAA
CCCCCTGAAAAGCATCCCGGACAATGCCTTCCAGTCCTTTGGCAGATACCTGGAGACCCT
CTGGCTGGACAACACCAACCTGGAGAAG
gtgagctcctggctgtgggctctgccctggttccttcttcccttcctggaggccccagga
gccagggccacagctggcaccatcccccgtccccaggttccctgtccctctggctatctc
caaggtgagcagctctgccacctcccttcctcgccttgtcacatccctaccctaatccct

Exon  3 +       4293       4456   0   Internal    164   100   Excellent
agggggttgtgtagattggattatctgagatcacttggtcatactgctttgaaaactggg
aaactcctcaaagtgctatggctcaggttcagggaaggatcctgcccctctggcactcgg
gtgcttactcattcactcatgaccaccttgctcccaccttgctcccaccttgctccccag
TTCTCAGATGGTGCCTTCCTGGGTGTAACCACGCTGAAACACGTCCATTTGGAGAACAAC
CGCTTGAACCAGCTACCCTCCAACTTCCCCTTCGACAGCCTGGAGACCCTCGCCCTTACC
AATAACCCCTGGAAGTGTACCTGCCAGCTCCGGGGCCTTCGGCG
gtaagaacacttccatgtcactcccagagcccaccctcatgtgatagaggcacattagcc
ctgcactaagacatgttggacatgcatcctagatctgctacctaataagcatgggaccct
gggagcctcagtttccccatttgtaaaatgaagatgacagcttcagactatcctgtggcc

Exon  4 +       4724       4865   2   Terminal    142    92   Excellent
cctagatctgctacctaataagcatgggaccctgggagcctcagtttccccatttgtaaa
atgaagatgacagcttcagactatcctgtggccaagtcaatcctggccccatagttcact
gcccttccccccagcactcccaccttcttccccagccccagcaagtttctgtctctccag
GTGGCTGGAAGCCAAGGCCTCCCGCCCAGATGCCACCTGTGCCTCACCTGCCAAGTTCAA
GGGCCAGCACATCCGTGACACGGACGCCTTCCGCAGCTGCAAGTTCCCCACCAAGAGGTC
CAAGAAAGCTGGCCGCCATTAA
acaggtgggggccaggtaaacaggtcccctatgtccctctttggtgattccagcaagtga
gctggtatcttccaggataccccctggccctggagggtcaggcagaccctccatttttac
agagagaggaggggacgactgggtcccctgttgaagggaggaaaaggtcctgcccaggac

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