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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (37448 bp)
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PERCEVAL Exon Candidates (10 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       2503       2605   0   Internal    103    55    Marginal
ctcacatctctgcctggggaactcaatggggggctgggggcagcaaagaataaatgagag
agatctcatttattagtatgtgcagattgcaagtgctgaggaagcaataaagcaggaagg
gaactaggagagagaatggggtggaggaggctatcatttttggttcctcccaccccccag
AGATCACAGATCCGCAGGGACGGAGTGAGCCAGGACGATATCAGCACACAGAGGGCTCAA
GAAGGTAATGCTGGCACCCACAGCACCTGTGTGAGGATTGAAT
gtctcagtatgtagaacgtctttgcaacatagcaagctggcagtgcatcttggcagcttt
caatcaaataattgtgactttgtttggtgttgcctaacagggtagcatgtaggttccttg
gggtagggcagggttctgtttcactaatgtgtgcccctggtgcctgccattaagttgacg

Exon  2 +       9590       9761   0    Initial    172    65    Marginal
cgtgaatttctttctttcttttttttttttttttggcctccctctgaggaagtcccatta
accttgtgccaaattctgtccccagagcccagtgttaagggccccgggcaccaggaaatg
gcattcatctacgcacgctgaactctaagcccactgttccggggagcgacatatttttag
ATGTTTGACGTCCAAATTCCAGAGGAAGAGCAAGTAATGCTTAGAGGAAAACTGGCTTTC
TTCCTCCACCACGCAAACCAGTGCTGGGGTGCATTTTTATTGGTCTGGCCGCTAAGCTGC
TGGAACTTTCCAAAGAAGGGTAAAAGCTCCTGCATGTGGAAGGAAGGGGGTG
gtgagcactgagggaggcatgtgggtagctttggtggcagctctggagattggattcttt
ttccctaaatggaagtggtttataaattcttctactgattattaaaagaatgatgtttac
tgtaaaaaaaaaaaaaagtcaggcaacacagaaagttataaattagtagaaatgatctga

Exon  3 +      13051      13330   2   Terminal    280    87        Good
actgaggatggccgagtccagctttacattttgaaagcatccttcctcatctctggagtg
tgggatatcaagacccactcccctaattcacatccgcattaagtgagcataggagtgtga
tgatgcttgcccatagcacagccttacacaaacaaaagggctgcccccacacctgtgcag
GACCCCTGCTCTGCAGAACCCACTGCACAGGGCCCATGTGCAGATCAGCGAGTTAATGCA
TGTTAAGCACTTAGAAGGGTGCCCAGCAAACTGCCAGGGTGTGTTGACCACCATCATCCT
CATCTTCATCATCATCATCATCATCACAGCTTTTGTTCCACCCGAAGAATATTTACTGAG
TACTTGCTATGTGCCAGGCACTGTTCTACGAGCCAGGGACACAGGTAAGAACAAAACCAA
GTTCCTGTCCCTAGGAGGGAGAAAAACAGCAAACAAATGA
gttcataatacacagtccacccaagggtgatgaggtgtgtgaagctccacaaagcaggga
gagggggaagggaaggctgtatgagcagatcccaggtaggtgagagccgggcagatatgg
tgggtgggcggggaaagagccagtgcaaaggcccagaggtgggactgggtggctggagag

Exon  4 +      14999      15394   0     Single    396    79        Good
agcctctgctctcagtgtggggtggcgagggcctaaaaatgaagaatcatactagaaaca
tcccgacgagtctggggaaagctgccctcagaaggctgtttaagctgaggactaaagggt
gatttggccaattgaagctgatgggaggccttccaggcagaggaccagcacgtgccaatg
ATGATCGGTGGCACTGTGCTAGATGCCAGCCTGAGTGTAGATGCCCGCCTGGGTGTACAC
TCCATCCTGAGTGTAGACACCAGCCTGGGTGTAGACGCCATCCTTGGTGTAGATGCCATC
CTGAGTGTAGATGCCAGCCTGGGTGTAGACGCCATCCTGAGTGTAGATGCCAGCCTGGGT
GTAGACGCCATGCTGAGTGTAGACGCCAGCCTGGGTGTAGATGCCATCCTCAGTGTAGAT
GCCAGCCTGGGTGTAGATGCCAGCCTGGGTGTAGACGCCAGCCTGGGCATAGATGCCATC
CTGGGTGTAGACACCAGCCTGGGCATAGATGCCATCCTGGGTGTAGACACCATCCTGGGT
GCAGACTCAGGATACCCCAGGAGGGAAGTTCTGTAG
ggagaaactgatgcttgcccaaggtcacacagcaagtgagtggcagagaggatttaagcc
ctagagccgggatttgaaccaaggccgttagctgtggagcccgctctggttgcccgtctg
ctctgccggatgagacaagctcagctggaggaaacggtttgaagagatgaatgtgcttgg

Exon  5 +      25661      25727   0    Initial     67    58    Marginal
tgacttgcttgtgtaaatgtctgtgtccccatgcgactgtagggctgagtgtgtgtttca
gggtgtatccgtgaacatgtctatatggatgttgctgagcctgtgagagtatgtttggga
tcaggtgagcttggactgcctgtgtttgtgtgcgtgtttgtgggtgtgcacgtgtgccac
ATGCCGCTGAGTGAGACCCAGGGCCTAGCCTGGAACCTGGGGTACAGAGGCGAGGCCGCC
TCTCTGG
gtgaggtgcgttccctgcacccgtcccgggagtctgccttctagaccctagcatgtgcac
ctgtcctgggagtcggccttctagaccccagcgtgtgtccctcctgcagcagaggcgtgc
agcaccacggaggatggggccgaacccctgctctgtccctcgggctatgagtgccacatc

Exon  6 +      25837      26036   1   Terminal    200    97   Excellent
ccacatgccgctgagtgagacccagggcctagcctggaacctggggtacagaggcgaggc
cgcctctctgggtgaggtgcgttccctgcacccgtcccgggagtctgccttctagaccct
agcatgtgcacctgtcctgggagtcggccttctagaccccagcgtgtgtccctcctgcag
CAGAGGCGTGCAGCACCACGGAGGATGGGGCCGAACCCCTGCTCTGTCCCTCGGGCTATG
AGTGCCACATCCTGAGCCCAGGTGACGTGGCCGAAGGTATCCCCAACCGTGGGCAGTGCG
TCAAGCAGCGCCGGCAAGCAGGTGAGTGTGGCACCCCAGCCCTGATCCTGGCTCCTGCCC
CAGTCCCCTTCTCCCTGTAA
gcgcctctcacccgcatggacgacctgccccaggaagcagccccagcacctgggcctgac
tgagagctcctcacatcttccccctgcccggctccttctttcatggcccctaccctttcc
ctgtcacactagcatgtgaccgaagctcttgagccagcagactggctgcaaaccccagct

Exon  7 +      28475      28552   0    Initial     78    45    Marginal
cctcagttccttgatctgtaaaatagagatggcgatggtaaccatagtgactacttcatg
gggtagttatggggcttgagtgagagaaacacgtatgaagtgcttagaatagcacctggc
ccactgtaggtcctcagtgaatgtgtgccaccatcatccctgtcttcgtaaagggaggat
ATGAGTTCAGGAATTTACCCAAAAGATGCAGAGCTGGAAGAGCTGGAATTCCAAGACTGT
CCACCAGCCTCAGAGCCT
gtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagcttcccctcccaa
atgaacgatttgaggcttccaaatggaactgtaagtggaattccccctagccttgttctc
agggggctgacacttagcaataattactggtaatttactggtaattatatataggtttga

Exon  8 +      29227      29320   2   Terminal     94    48    Marginal
cccgtaagagaggcttctagcgggtaccaatagtccttcaagtttgaccatccagcacct
ggaaccaggcatttgaggggttcacattttatgcaagaggaaaatgaacactgacatgta
tagtaaatctggtttttcagagagtgggttcagggaaaatcggtgcatttttctgagtag
GTTTGAGGTCACACAGAAGCTGAGCTGCGGGGGCTGGCCCCTCCTTGTCCTGCCCAAGAC
ACTGCTTGAGAAGAATGAAGTGGGGCTTGTCTAG
ccttgagtgggaggcaatttgagaaaagtgacgagtaatcatttttggtaataaattata
agtgattatatttggcctgaggagggggtccggggtccacatttacctctgtctccttgt
ggtgttatgggccagaattcacccccaggtaaagggggagcaggaaagttttggggagct

Exon  9 +      30825      30992   0   Terminal    168    55    Marginal
atcatattagaaactagagctgagacattacaaatgctcatgtagcctctgaacaattcc
attgtacactagtgagatggggagactgaaaaacacaagtaattcctcagtgttattatg
acaacagttttggccttctaaactcctaaaagaagttttttcctctcacttgttttccag
ATGGGCGAATCCTACGACACAAACTTTACAAAGAATATCCAGGTAAAAGAAGAAACTGTT
CTTTCTTTCCAGAGGGCACAAAAAAAAGGCAGTGAAAGTTTCTTATGTGAAGAAAAAAAT
AAAAGCCCAGGGCTGAGATATAGGGAACAAAATGGGACCTGGGATTAA
gaaacaaaatagaagacctgtggtctgatggtgggcagggagttgtgagtcacagaggag
ctcatggcaaacatgacctcatgctgaagagcagagcctggaactgctcatatttaagcc
tctgctactttcattcagagaattggaaaacacgcctgataccactcttccattcatcca

Exon 10 +      33386      33452   0    Initial     67    78        Good
ttggcagttcctggtgagccacggggggcattagagcaggaatagatacatctaccccaa
cagagctgtgttcttttcacagaaggtgactcaaagaatgtggcagaacctggaagggga
caacagaagcactttcagtaaagcaacggcaagcaggtgagtgggcagagagcaagagtc
ATGGCCAGGGTAAATGTGGGCAGCCAGTGTCCTGGCAGCTTTCACCACCAGGTTGAGGAG
CAGGAGG
gtgagagtagcgctttccctactggtagaatttgaaattcccttctgcagtaagtcctca
cctaacgtcatcaataggttcttggaaactgactttaaatgcaacgacatactatatgca
ctgtatgccatagaagcttaactcatttgtttgtttttttaagagatggggtctcactct

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