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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (41870 bp)
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PERCEVAL Exon Candidates (15 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1273       1938   0     Single    666    89        Good
agggacggggccgggccacggggcggggaggagccgcggacggtgggcggggccggcggg
ccggggcctaaaaggcggcgcgggcggggttcctgacgcagctgcgggcggcgggcggcg
cgcacactgctcgctgggccgcggctcccgggtgtcccaggcccggccggtgcgcagagc
ATGGCGGGTGCGGGCCCGAAGCGGCGCGCGCTAGCGGCGCCGGCGGCCGAGGAGAAGGAA
GAGGCGCGGGAGAAGATGCTGGCCGCCAAGAGCGCGGACGGCTCGGCGCCGGCAGGCGAG
GGCGAGGGCGTGACCCTGCAGCGGAACATCACGCTGCTCAACGGCGTGGCCATCATCGTG
GGGACCATTATCGGCTCGGGCATCTTCGTGACGCCCACGGGCGTGCTCAAGGAGGCAGGC
TCGCCGGGGCTGGCGCTGGTGGTGTGGGCCGCGTGCGGCGTCTTCTCCATCGTGGGCGCG
CTCTGCTACGCGGAGCTCGGCACCACCATCTCCAAATCGGGCGGCGACTACGCCTACATG
CTGGAGGTCTACGGCTCGCTGCCCGCCTTCCTCAAGCTCTGGATCGAGCTGCTCATCATC
CGGCCTTCATCGCAGTACATCGTGGCCCTGGTCTTCGCCACCTACCTGCTCAAGCCGCTC
TTCCCCACCTGCCCGGTGCCCGAGGAGGCAGCCAAGCTCGTGGCCTGCCTCTGCGTGCGT
GAGTACGGGGCGCGGGCCGGGGGTTGGGAGGTCGTAGTCTCTGGGTCCCTGCATCCTTGC
ATCACTACGCCCCTGGCTCCCACATCTCTACATCTTTACGTTCCTGGACCATCCCGGCAG
TTCTAG
gctaaggtcattggtcccagaaaccacgtgcgtttctttcattcattcttttacacttct
ccccacaggctgggaatatcttcagtgacgggacagcagggtccctgccctgcccttcgg
tgggcattccattcccccacttaagcggtttaggcaagtgccaccctcccgttggccccg

Exon  2 +       3241       3324   0    Initial     84    87        Good
aatcaggggagtggcttctgactggcaggacctgttggcgctgttttctgccacaccgta
ctttgggggggagggggagggggaggcatttcttcataaatgtgagaatgccccgagggc
aagactcagcagggctctgtgtggtttctctgaggctctgagtcgagcagccgcaccacc
ATGCAGGTCAAAGCCGGGAAAAATCGTAGCAGGACAGCAGTGGGGAGAGCCTGTGCCTTC
CAGCTGGGCGTTGGAGATGTGAAT
gtaggggatgactctgatttctttttttgtcattagaatttcactggttcagtctccctc
ccgcctaggtacatgtcggcccggtatgtaacgacatggatagtagcttacgcagcctgc
actcttatctttaaaaaatgaacccctggttggctgggtgtgatggcccacgcctataat

Exon  3 +       3487       3576   0    Initial     90    47    Marginal
ggcgttggagatgtgaatgtaggggatgactctgatttctttttttgtcattagaatttc
actggttcagtctccctcccgcctaggtacatgtcggcccggtatgtaacgacatggata
gtagcttacgcagcctgcactcttatctttaaaaaatgaacccctggttggctgggtgtg
ATGGCCCACGCCTATAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCTACCGAGGT
CAGGAGTTCGAGACCAGCCTGACCAACATG
gtgaaaccccatctctactaaaaatacaaaaattagccgggcagagtggctcacgcctgt
aatcccagctgcttatgagtctgaggcatgctccgggatgtggaggttgcagtgagttga
gatcccgccactgcactccagtctgggtgacagagcaagcctgtctcaaaaaaaaaaaag

Exon  4 +       9671       9824   2   Internal    154    51    Marginal
cccccagtaggcctggccctccctggagcatcacctggatagctggccatgggcaggcct
tgcctggcccgtctgcagggacaggacacgtgtatgcatgcagattggtactgtgtgccc
gcacgctccccagaggccctgtggcagcaccctcttcccgctgctgcccttttccaacag
GAGGGCCCCCCACAGCGTCTCCTTCCCTGATACTGGCCGAATCCTGAATTCTCCCTCTGG
AAGGCGGACCCTCCGGGGTGGCCACAGCACGTGCGTGCCTCCGGGAGTGTGGGAGGCGTC
TCTCCCTGCATCCCTGGCCGTCAGACCACCCCAG
gtggggaccgttctctggcattgcccgcccctcccctgccctaggatttgcccactacgt
gaggaatgagcaccgacctcctattctgggccttggagcgtgacgcccgcaaactcgatc
cctgctgagtcatcctgacctcggggtgggccagcatctgtcactactgagacactgtat

Exon  5 +      10186      10258   0    Initial     73    47    Marginal
tgtgagctgcttgttaacgagaaagccagactctgtaaaatgtttgaagagatttatccg
gagtcaaatgtgaggaccaaggcctggaggccctgaggacatgtgccccagggggtgggc
cacagctggagttcatacctcctacaaggacagaagttacaggcagacatcagtcagtac
ATGAAAGGTATTTGTTGGTTCTGCCGAGAAAGGCGGGACAACTCCAAGGCGGGGATGGGC
TTCCTGGTCACAG
gtgggttcgaagatttcctttttctttatatatatatgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatttttttttttttttgagatgctt
ttgttactcgggctggagtgcagtggtatgatctcagttcactgcaacctccgcctcctg

Exon  6 +      15693      15794   1   Internal    102    67    Marginal
aggccttggtgcccaccccagggtcctgaggagaaatgggctggccgcgtccccaatccc
tcctgcgtgagcctcagggtatctgaagtggcttttgagtcaggaccaggaccacagctt
gggcctcactgtgacaggtgtcctggccaaggccctggcgctggctctgggtatggccag
GGCTGTCCTTCCTTCACCGGGCTGTGGGCCTTGCTGTCAATGCCCACCCGAAGATGAGGA
TGTTTCTGTGGCTGATGGCCCTGAAGGGTGGTGGAGACACAG
gtgaagggaggaggagggcaggggttcctccaatgcactgcccccaaggcaccccagctc
ctctggagcccctgccagccagccaggtgggaggcagccaggtgaggacggggaagacag
caccccagactgggaggggcccccagctcagcctgcccggctatctgccaatcaagccaa

Exon  7 +      18083      18131   2   Terminal     49    82        Good
tggctcagcgtgcgcacatattgcaacagaaccccccaaaacacacacacacacgcacac
acacacagtggctcagcgtgcctatatattgcaacagaacccccaacacacacacacaca
cacacacacacacacacacacacacacacacacagaggctcagagctgggtgccttacag
GGCCCAGGAGGACGTGCTGGTGTCTGGAGACCTGTCTGAGCGTGCCTGA
ccccacatctcagcgcctcctggggcaggcgttctggccatctgtgtggggtcactcagg
cttctgaagcacacggtgctattttgggtttcatcgtatgcccccaaagcagcagggcag
cagggtctgctctgctcaccacaggcccctgtggcccctcccaggctgccgtccccaggt

Exon  8 +      18846      18971   1   Internal    126   100   Excellent
aacaggtctcagaaagtcagaacgtgccctaagggctggcaggggactggagctgtttaa
ggagcttgtttttctggtggacctggccctggggtgggggtggggtcgtcacctcccagc
ctacccctgagctggcgtctgtctgcccgtggaactcaccgctgccctctgtctccacag
TGCTGCTCACGGCCGTGAACTGCTACAGCGTGAAGGCCGCCACCCGGGTCCAGGATGCCT
TTGCCGCCGCCAAGCTCCTGGCCCTGGCCCTGATCATCCTGCTGGGCTTCGTCCAGATCG
GGAAGG
gtgagtacgtcccccaggccccaccggcggcccctcgaggctttgcctgtgtgtccttca
cagggcatgaggtcccgtccccgggtgcctcccagtccgcagctctgcagtgctgtacaa
cgtggagatttccctctgggaaaatcacccagcaagtgaaatccgacccagagggggaca

Exon  9 +      29540      29645   1   Internal    106   100   Excellent
tggttggaaccctgcaccctccatgtggctcagcaggtacataccatttgtcacagtgaa
aagccttcactccagcatttttgtttgctatgtattttgctccaggaacattctagaact
ggtagcatgacctctgttcagcgctctctaacccagcattcctttctttggccctgccag
GTGATGTGTCCAATCTAGATCCCAACTTCTCATTTGAAGGCACCAAACTGGATGTGGGGA
ACATTGTGCTGGCATTATACAGCGGCCTCTTTGCCTATGGAGGATG
gtaggttctggaatgtctgggtcccttggtctggggacatacagtccctgacgtgtccag
gaatcccaaatctcccagccatcaaggggcagttaaagggagtggactgcccctcccttt
aactgccccttggcagttaaagagtggcaggtgaccctccagagtcacccacatcccgac

Exon 10 +      30222      30266   2   Internal     45    97   Excellent
gcagggaccccccggaacacgcaggaggctgagctccctcccactccaggtccgctttcc
agcccagcgagcagaccaccggggggcaggctcaccagctgccctgggatgctctctccc
cggtgatttattttccctgatgaggatcatataatttgaacgctgttctctaaattttag
GAATTACTTGAATTTCGTCACAGAGGAAATGATCAACCCCTACAG
gtacgtgcaagaatggatggagccgtcttttttcattattttaatgtgaggcaggaagca
gccacattccactcgaagcctgttggtcggctcaggccagttcacagtcgggccgtgatt
ggggcctctggggccagcaggatgtggggcgggtggcttctggccgtgtgtccttgagca

Exon 11 +      30870      31047   2   Internal    178   100   Excellent
cgctccaggcacagcctcctgccgccagcctgtgttctcttgctgcttcccaccttcccc
gagaagcccagcacagaggctggagctactgcttgcgaggagcccacctggctcctgggc
acagggtttggccttcagcccgggctgcgttgggtgacatgtcgtccctgttctttccag
AAACCTGCCCCTGGCCATCATCATCTCCCTGCCCATCGTGACGCTGGTGTACGTGCTGAC
CAACCTGGCCTACTTCACCACCCTGTCCACCGAGCAGATGCTGTCGTCCGAGGCCGTGGC
CGTGGTGAGCCGCTACCCGCCAGCTTCCACCAGGGGCCTGAGAGGCTGTGGCCAGCCC
gtcccttccagaccggagtggtgccccacatctctaagcctcccctacgcagagggggcc
ccgcgtctctaagcctcccctacccggaggggtggagtggtggtctcccctcacagcgac
cgcagaggaagtgtctggggatcatcctcaagctcagctgctgggggagtcaaaggggag

Exon 12 +      31878      31981   0   Internal    104   100   Excellent
tggaaagccctgtcctgggaagtccccccagaggccagaatccagcctgagaggtcctct
gcagagggctcttgtgagcacagagggcgagggctggcccggtgcagagggctcccagtg
agcacagggagggcgagggccggcccggtggggcccagctcactggttgtgcctgcctag
GACTTCGGGAACTATCACCTGGGCGTCATGTCCTGGATCATCCCCGTCTTCGTGGGCCTG
TCCTGCTTCGGCTCCGTCAATGGGTCCCTGTTCACATCCTCCAG
gtgagcacagcccgacccaccacaggtgagggaggcccaggcctcatggccaggttcaac
atgttccatgtctgtaaaaggtttgtctctgtgatactggggatgcataattgctcaaat
aggccaggcatggtggctcatacctgtaatcccagcactttaggaggccgaggtgagcag

Exon 13 +      32754      32850   2   Internal     97   100   Excellent
agttggttgggggaactgagaggcccacagccagcggctggaggggcctggttcccactg
tggccagagaggcccagacaagccaggcacaggccctgccactccccagcctgcgtgtcc
cctgtccacgtgctgagttgtggggcggtggctgactctgccactcttgtctgtccacag
GCTCTTCTTCGTGGGGTCCCGGGAAGGCCACCTGCCCTCCATCCTCTCCATGATCCACCC
ACAGCTCCTCACCCCCGTGCCGTCCCTCGTGTTCACG
gtaagcctgctgcacggccctgtgccctacatccctgggggttgtccgggggctcccaga
gggaggctgccacagcttgcagctctgtctggggtgtggactgggtgacagctcaaatgt
ggcctcctgccgagctccgctgaatgccagagagcgctggaggggctttagattttattc

Exon 14 +      34001      34197   1   Internal    197    97   Excellent
tccctccttccctcctccccgcctcttccctcctcctctcctccctccttccctcctttc
ctccttcaagaccttgcatgttgctcagatgaggtttctcctttaaaacaaaattccctg
gtgctcagctgggcccagccaggctggacagtccccggtggccaccacggccgtccacag
CCCTGCTCGTGGGCCCCAGGGCTCAGCCAGCCGCCTCTCTCTTCCAGTGTGTGATGACGC
TGCTCTACGCCTTCTCCAAGGACATCTTCTCCGTCATCAACTTCTTCAGCTTCTTCAACT
GGCTCTGCGTGGCCCTGGCCATCATCGGCATGATCTGGCTGCGCCACAGAAAGCCTGAGC
TTGAGCGGCCCATCAAG
gtgagcccggggcctcccgctcacccaggcacccttcacagaggcagggtccgtgggtcc
taaggaccctgagttgggagccagcatcccagctcagcctctggacctgcccctgcctgc
atgcacctgggtcgactaattccggtgatgacttgaccaccagctacgagggtgccaagt

Exon 15 +      36104      36281   0   Internal    178   100   Excellent
tgcagagtcgagggcgggacagcccggtgtgtgaggcagatggagtgcagatcgcatctt
ggtgacctggaagtcagcagccgtgggtgtggagggcccaggagggctgaggaacctcgg
ggcatgggggagggaggctggacaggagagggctcacccaggccctgtcctctgccccag
GTGAACCTGGCCCTGCCTGTGTTCTTCATCCTGGCCTGCCTCTTCCTGATCGCCGTCTCC
TTCTGGAAGACACCCGTGGAGTGTGGCATCGGCTTCACCATCATCCTCAGCGGGCTGCCC
GTCTACTTCTTCGGGGTCTGGTGGAAAAACAAGCCCAAGTGGCTCCTCCAGGGCATCT
gtgagtatctcgctggcccacagcccgtggtaccctctgccctgggcagcgaagggagtt
gagaggcgtcggccgtctccacccacatggggcgaagcgtgttgggtggcaggagggttc
aggtcactgcagtgtccgccagtgacacgcagcccacatggttcagggataagacacaca

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