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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (5837 bp)
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PERCEVAL Exon Candidates (4 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1111       1368   0    Initial    258    73        Good
cgcctccacacgggcccgcaagcaggcaccgcccccgactctgcccccagccccggctcg
ggcccggcccccgcgagcacggcgcgcgcctccggctcctgtggccgcgcgctggcctgg
aggctgacctggaggctcatctggaggccgagctgacccggcaggccttgcgcgggcaac
ATGGCGGCGCCCGGCGAGCGGGGCCGCTTCCACGGCGGGAACCTCTTCTTCCTGCCGGGG
GGCGCGCGCTCCGAGATGATGGACGACCTGGCGACCGACGCGCGGGGCCGGGGCGCGGGG
CGGAGAGACGCGGCCGCCTCGGCCTCGACGCCAGCCCAGGCGCCGACCTCCGATTCTCCT
GTCGCCGAGGACGCCTCCCGGAGGCGGCCGTGCCGGGCCTGCGTCGACTTCAAGACGTGG
ATGCGGACGCAGCAGAAG
gtgcagttccctgcccgatttctcccagccccgcgcagcccctgtccccgcccccgccca
ggtaccccggcagagcttcccagggttgcctgtccctgaaccttgccccccgggtaggcc
cggccttacagccttcatccgcgcgtgggttggatcgtctgcaggactttggccggagtc

Exon  2 +       1639       1772   0   Internal    134    74        Good
tgtccctgaaccttgccccccgggtaggcccggccttacagccttcatccgcgcgtgggt
tggatcgtctgcaggactttggccggagtccagtgggccaccggctgggccgtacagtgg
ggagctttgggcgcctttgttcggagaatgaactcactctcggtcggcctgcttccgcag
CGGGACACCAAGTTTAGGGAGGACTGCCCGCCGGATCGCGAGGAACTGGGCCGCCACAGC
TGGGCTGTCCTCCACACCCTGGCCGCCTACTACCCCGACCTGCCCACCCCAGAACAGCAG
CAAGACATGGCCCA
gttcatacatttattttctaagttttacccctgtgaggagtgtgctgaagacctaagaaa
aaggtaagatgtgtttgcacgcagcagagctttgcactggagcctgggcctggggctcct
ggctgacgttatagcggggaacgtagagaaacggatgcagaggtggcagaagtttgctga

Exon  3 +       2501       2544   0    Initial     44    46    Marginal
tgaagtctcttgctgaactgacgcaccagggcctgccctcagatgctaagaaacaagtcc
agttttcagttacaaggctgtgcccagccccacccaggccacactctgcctgaggccagg
gacactggatgccgcttcctgggtgttaggagcttataaaattgccaggtctgtgctgta
ATGTGTTGCCTTGAGGCCTCGTTGGAGTTTGCCAAGCTGTCCAG
gtgggtgtttgcgcagccctgggagttcatcacacccggggagctgcagggtcagccctg
ttctgggagtgcctgtaccttggagcataagggcactcccaggtgtagttcacagcagtg
ccccagctctccttccttgacagcagacagggaactggcaggggcagtggagccgctgcg

Exon  4 +       2758       2920   2   Terminal    163   100   Excellent
acccggggagctgcagggtcagccctgttctgggagtgcctgtaccttggagcataaggg
cactcccaggtgtagttcacagcagtgccccagctctccttccttgacagcagacaggga
actggcaggggcagtggagccgctgcgtcctctcattctttacctgctctccctacacag
GCTGTGCAGGAACCACCCAGACACCCGCACCCGGGCATGCTTCACACAGTGGCTGTGCCA
CCTGCACAATGAAGTGAACCGCAAGCTGGGCAAGCCTGACTTCGACTGCTCAAAAGTGGA
TGAGCGCTGGCGCGACGGCTGGAAGGATGGCTCCTGTGACTAG
agggtggtcagccagagctcatgggacagctagccaggcatggttggataggggcagggc
actcattaaagtgcatcacagccagagcctgttgtgtctcagttgggtggtccccaggac
actgcctgtggggacctgccctgcccctcttaggtttggagcagaagtggaggtgcccac

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