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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (9044 bp)
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PERCEVAL Exon Candidates (8 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1247       1409   0    Initial    163    89        Good
caggcagaggaagggggcgggagatcggcaacgaagggcgtagccggcttccactcaaac
ttgaggtttccccccatcccctcacagcggaagccgacctcgcccgccccggaagtgcaa
actgtgtggtctggcaggtgtggattccgccggtgaaggctgaaggcagctaccttaaag
ATGCCGGGATCCGCAGCGAAGGGCTCGGAGTTGTCAGAGAGGATCGAGAGCTTCGTGGAG
ACCCTGAAGCGGGGTGGTGGGCCGCGCAGCTCCGAGGAAATGGCTCGGGAGACCCTAGGG
TTGCTGCGCCAGATCATCACGGACCACCGCTGGAGCAACGCGG
gtgaggccggcctgcctccgccggcgaacctggcccctgtctgttcccgatcccagggct
gaaaatttcccaggcctcacttcgcgttggctcctcttatcctctctcttttggactgta
ggggagctgatggagctgatccgcagagagggcaggaggatgacggccgctcagccctcc

Exon  2 +       1531       1651   1   Internal    121   100   Excellent
tcgggagaccctagggttgctgcgccagatcatcacggaccaccgctggagcaacgcggg
tgaggccggcctgcctccgccggcgaacctggcccctgtctgttcccgatcccagggctg
aaaatttcccaggcctcacttcgcgttggctcctcttatcctctctcttttggactgtag
GGGAGCTGATGGAGCTGATCCGCAGAGAGGGCAGGAGGATGACGGCCGCTCAGCCCTCCG
AGACCACCGTGGGCAACATGGTGCGGAGAGTGCTCAAGATTATCCGGGAGGAGTATGGCA
G
gtcaggctcacgtcctgggctcctggttggatccagtgacactttttgcacgggcccctc
tacctgctcggagactttattggagctgaacagcccttgttacctgcctgaccactcctc
cccacctctctctttgggtcttgttgcctctatagactccatggacgcagcgacgagagt

Exon  3 +       1807       1988   2   Internal    182   100   Excellent
agattatccgggaggagtatggcaggtcaggctcacgtcctgggctcctggttggatcca
gtgacactttttgcacgggcccctctacctgctcggagactttattggagctgaacagcc
cttgttacctgcctgaccactcctccccacctctctctttgggtcttgttgcctctatag
ACTCCATGGACGCAGCGACGAGAGTGATCAGCAGGAGTCCCTGCACAAACTGTTGACATC
CGGAGGCCTAAACGAGGATTTCAGCTTCCATTATGCCCAACTCCAGTCCAACATCATTGA
GGCGATTAATGAGCTGCTAGTGGAGCTGGGTAAGAGGCCTGATCGCTGGGAAAATGGGAC
TG
gtcacaggcacataagggaacagaagcctctgaaggttgttcattagcagagatgggaga
ttagctgtcttctggttctcagaggtttgtcctccttcctgattaggaaatgttgcaaca
ggtgacaggaccaaagtaatcctctctacttttccttacagaccaacccttgatagacta

Exon  4 +       2993       3222   1   Internal    230    96   Excellent
ttaagcacattaaccctgtggtaccagggtctgctaggtgggcagtgcatgtgaagggca
gacatctttttccgtatacgcgtaatgtgtgtttgtgatatagcaatttcatatatatat
atatatatatatatttttttttttttttttttttttttttttgcaaaaccgttcttacag
AAGGGACAATGGAGAACATTGCAGCCCAGGCTCTGGAGCACATTCACTCCAATGAGGTGA
TCATGACCATTGGCTTCTCCCGAACAGTAGAGGCCTTCCTCAAAGAGGCTGCCCGAAAGA
GGAAATTCCATGTCATTGTAGCAGAGTGTGCTCCTTTCTGCCAGGTAAGGAGACTGCTGG
AGTTGCTACTAAGAAAAATGAAAAATGAAGAAGAAATAAACGAGAGATGG
gtagggccattccaaccttgaattgataagcaagactttgagacactgagaagatcaagt
aaaacattaagtgaattttcaaggtgttcgtcctgtgaacattcataaatagtggtttaa
gaaagttggggccgggagcgatggctcatgcctgtaatcccagcactttgggaggctggg

Exon  5 +       4122       4237   0   Internal    116   100   Excellent
acagcttaccagagctatgagagtctgaaaaatcagttgtccgaaaaatgagttatctat
tggaaattatgtgctggatatgcccatatcacacaattccccagatccagttacatttga
gagcacttttcactatttctcactctttctcttagaatcagcctttccctcccattgcag
GGTCATGAAATGGCTGTGAATTTGTCCAAAGCAGGTATTGAGACAACTGTCATGACTGAT
GCTGCCATTTTTGCCGTTATGTCAAGAGTCAACAAGGTGGGTATATCTGGAGTTAT
gttgaattcatgaagattatgtttctaaaatattgatttttatctcctcctgtaatatcc
acggtgagagaataaagtttctagcacctttcaaagtacatacttaggcctttttaatct
gttaactgaatttcttttcccttttttctgcatcattgttcctctcttggagtagcctct

Exon  6 +       4802       4970   2   Internal    169    84        Good
gcagtttcttgtcccattttacattcattctttccttggaaacctacttttaagctagaa
cttgtattgagccagggatcccttcacctctaccagtctgtgacccctcacgataccaat
tctgaggtctaagcatttagctttttgtggccagtggcccttttagggctccacccccag
GATGGCTCACATTTTTTGTCTTGTCCCAAAGGTGATCATTGGCACGAAGACCATCCTGGC
CAATGGGGCCCTGAGAGCTGTGACAGGAACTCACACTCTGGCACTGGCAGCAAAACACCA
TTCCACCCCACTCATCGTCTGTGCACCTATGTTCAAACTTTCTCCACAG
gtaagtgtgtctgtctctagctagaagccagcagaaaagaaggaagccaaagggtaggct
tgaactctgggacttcaaccacctcactccagggcctccatttatctgcatttactcaat
ggattacacccagtggaggctggaaagaaccacagaagtcttgattcagtaaaacagttg

Exon  7 +       5978       6059   0   Internal     82    89        Good
taatccattcatctgtttatgggcatttgggttggttccagcttttggcttttgtgaata
atgctgctataagcatctgtgtataagttttctgtgtggacatatgttttcatctctagg
gtacatacctaggagtggaattgctgggtctctagtttttataaattttttcctttttag
TTCCCCAATGAAGAAGACTCATTTCATAAGTTTGTGGCTCCTGAAGAAGTCCTGCCATTC
ACAGAAGGTACAGAAGCTGTGT
gtgcatgcgtgcatgtgttgtgtgtattcggggtttgtgtgtgcatgtgttttggtcttt
ttgttgttttgttggtcagtagaactgaatgctgtcaagttgtgttttttatcatacttc
ttgtggggactgttttctttagaagctcaaagtgcttgaggacctgaccaagtccatgtt

Exon  8 +       7287       7444   1   Terminal    158    99   Excellent
gagagttgtaagcagggattgtcatgatctgaagtcatctcttctggtttgcatttttcc
atagcttcccgtccttggggagctaatatgcctgcattctcgagcctggaatctatatgc
tacttaattatgagagagggagcctcagttttacctttagcatgtgtgcttgcctttcag
GGGACATTCTGGAGAAGGTCAGCGTGCATTGCCCTGTGTTTGACTACGTTCCCCCAGAGC
TCATTACCCTCTTTATCTCCAACATTGGTGGGAATGCACCTTCCTACATCTACCGCCTGA
TGAGTGAACTCTACCATCCTGATGATCATGTTTTATGA
ccgaccacacgtgtcctaagcagattgcttaggcagatacagaatgaagaggagacttga
gtgttgctgctgaagcacatccttgcaatgtgggagtgcacaggagtccacctaaaaaaa
aaatccttgatactgttgcctgcctttttagtcaccccgtaacaagggcacacatccagg

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