--------------------------------------------------------------------------------
GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (68295 bp)
--------------------------------------------------------------------------------
PERCEVAL Exon Candidates (23 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1229       1399   0    Initial    171    90   Excellent
accacacccggctaattttttgtatctttagtagagacggagtttcagtatgttggccag
actggtctcgaactcctgacctcaggtgatctgcccgcctcagcctcccaaagtgctggg
attacaggcgtgagccaccattctcggctgaagatccattttaagaagatttattcctct
ATGATGGAGAAGTATGAAAAAATTGGGAAAATTGGAGAAGGATCCTATGGAGTTGTTTTC
AAATGTAGAAACAGGGACACGGGTCAGATTGTGGCCATCAAGAAGTTTCTGGAATCAGAA
GATGACCCTGTCATAAAGAAAATTGCCCTTCGGGAAATCCGAATGCTCAAG
gtaattgattcacttttccttttttttctttttcgagacagggtttcactctgtctccca
ggctggagtgcagccatgtgatcatagctcacagcagcctggaactcctgggctcaagcc
atgcttctgcctcagcctcctgagtagctgggattacaggttctagccactgctccggga

Exon  2 +       4386       4578   0   Internal    193    55    Marginal
ttcaaggtttttgactgattgactggaagaatgaggagattgttcactgtgatagagaga
cccaggtgcaaatgtgggggaaaggagatgaagagctctgttttggacaggttaagtttg
agttgtgaacccaaggagacttgtaaagtaggcagttgactacacaagtctggcattcag
GGGAAGTCCAGGTTGGAGACAGAGTTGGGGGACATAAGCATATCGATGGTATTTAAAGCT
GTGGGACCGGAGGAGGTCACCATGTGGGATGGAGGGACAGGTACTAAAGGTGGAAGCTTG
GTGTACCCAGCCTTTGGGGGTCAGGAAGATGAAAAGGAACCGGCAAGGGAGGCAAGAAGA
GGCGATCTGCATG
gtaggaaaccccatagaacaatgttctttcattattattattattattattattattatt
attattatttcttttttggagacagtctcactctgctacccaggctggagtgcagtggca
caatctcagctcactgcaacctccgcctcccaggttcaagagattctcctgcctcagcct

Exon  3 +       6880       6971   2   Internal     92    84        Good
gaagaggaaagaaagaatttctgccagcagtggcagaaaaagtagatgctcctagcggag
ttggaggtcaaggacaggacagtgtcactgtgggatccctgggcagacgttctacctatg
gcaggtggtatgggggcgttaaaatatattagaccagcattggtcaagggctgaaagcag
CAGCTGGGACATTGTCTATGACATGTCTCCCTCCAGAAAACAAGAAAAACAAGTGAGACA
AAGAGAAGGAATCATCTACTGCTATGTGGCAG
gtaggggcaagggacctagtaaatttggacaaactgccaagtatcattgttacttaggat
gcacaaattacactaataacaaccttagaaggtagatatcgttacactaataacaacctt
agaaggtagatattgttatcccattttacaaatggattcagtatggttaatgatttgcca

Exon  4 +       7469       7495   2   Internal     27    80        Good
gtcagaatttatactgcccgttctcccgcagggccttagctgtgagatttgtggcttctg
tggaggcctgagtgcagattgtagctgaacagccgttctttccatatctcattccataac
cctatggactattttagaaggctaaaatagccttctaaacctttgtacaaacctttgtag
GTTTGCCACCTACAAAGATGAGAATAA
gtgtgaggggaaatgtccatttgaaaattaattataaatatcacaacgtaatgcagagat
tcataatgagaacaaggtcactcctaaagggtgaaaattggttcttggcaggtggcaaaa
aaatctaacttttttattgtttaaagcacagatatacatatggttcatatacagatatat

Exon  5 +       8564       8681   2   Internal    118    78        Good
ccctgtttggcattgctttgctgattttttgctgaggagggcagagggctcttgggccaa
acatctaacagcggtcaagcagcctcaaggatgcaagagcaggaaagtagagggtcaaag
ggagtaaacatagaagaggaaagcacagacagaagggcagaaggtgggattttaacatag
TGCTGTGGCCAACGGCCAACGGAGGCGCTGGAGGCAAAAGCTCTTCACACAGTCCCCCAA
GAGGCTCACTGTCTTCAAAGAGCAGACCAGAAGTCCTGCTGGGCACATTACCATCATG
gtgacaggcacatgctttaagaagtaggactgtcaaggttgcctgttatccaaagcattt
attaagtgcttaactgaatgtgctctgtgcagtgccacatccactaaatgctaagagtac
catgtaaatgctccctagcattagaatctaattagaactttcatagttggaagggcttct

Exon  6 +      15501      15608   0   Internal    108    81        Good
acaaacaaacaaacaaacaaacaaaaaaccacacagaatttctaaaccaacagatgtttt
cggccacacataaaaaccaatgaaataattgactttatcacagggttgctgcattaattc
ttggctgtgtcagtgccatttttcatttttgtcacaattgtactattccttctctcatag
TACTTTCCACGTACTGTGTTAGTCAGTAAAACAGGTCAAGCATCCACGGTGCACATCACT
GGCCTGTGCTGGGTCTTGAGAGGAATGCAGAAGAGACCCGTGAGCCAG
gtgtgaggctttgttcctcatacatgtaagctgaaggagaggtaacagggcagcaacaca
gatgagttgggaaaaggagctacctctttgtcacttgcttgttccctccagacctgctcg
agcctgattccagatgttttcttaggacagtggtcagtatatctctattatccagctcac

Exon  7 +      16468      16601   1   Internal    134    61    Marginal
aaaaaaaaaaggaagtcacagcatgccccaggccattggactcctagaataccacttata
tgccattccccagagggttttcttccactctgtggtacacacatatcttaactggacagc
cagagtacttgccatttctgttcaccaggagatccagttaacatgatgtcatcaatacag
TGGAGCAGCATGATATTCAGTGGAACGTCAAGACAATTAAGGTCCTTGTGGATTATATGG
TGACAGAGTGCTGGAGAGTTAACTTAGGCTTCAGGCAGGACAGTGAGTGTGAACTGCTGT
CCATCCCACACAAG
gtgaactgcttttgatctaacttactgattggtattggaaagaatacattcaagtcaata
gttgcatgtcaagtgccagagcctgtgtatatcagttccaggaaagataccatatctggc
ccagctgctgcaattggaagtacagttgggttgagtttataggagtctaccaggtgagtt

Exon  8 +      16868      16989   1   Internal    122    62    Marginal
gtatatcagttccaggaaagataccatatctggcccagctgctgcaattggaagtacagt
tgggttgagtttataggagtctaccaggtgagttgagggggttagcatgggcatcaccac
ctctgcattcctaagtctttgatggtggtactcatcactgcattttctcctgggatgcag
TTTTGCTTCGGATTTACTATTTTGACCAGGGTTGTGTTGCCAGGGAGGAAGAGCAGTTTC
AGGAGCTTGTGTTTGGCCCTTTCTGCCATATTGGCTCTTACTTCACAGGTCATAGAACCA
AT
gtgagggtatgcttagctgactgttaagcatacctatgccaattttgcatttctcaagtg
gaggaagttatctcaagaatggattcatggacctgttaagcccagtatgaaacggtgctc
taacctgaggccatggtagcatttggggtccccacatatcagtgccagctcagaccttgt

Exon  9 +      19474      19615   2   Internal    142    57    Marginal
taggtgttaacaagagccagcttattcaatacttcccataatgaccattgccgcatacca
ctcatgtgccactgcagtgccgaagcaagcttacaccccattcaaaaccagccctgacaa
aaggcttagtgactgtgttgctacacctccctgggctcctcccaccccacttatcatcag
CAGTGGGGTCCTTGTTGCCATCTGCTCCATGATTGATCCAGTTCCAGAATTCCATTCTGA
AGGCCTGCTAGCTAAGGCCACTTCAGGTACCAATGGTCTTAGACTGTGCACCTCCCAGAA
AGTAAAGTCTGAGACAGGAACT
gtgtgttaggagtttattttgggaagtgataccagagagcaggagtaggtgacaggggag
aaaacaaggaaggaggaaacccaatgtaaccaggaacggggactcatcctgccaggcctc
tttaaggagcccaaggaacggaagagaggacactgaagcaccctgtcccccattggtcca

Exon 10 +      24208      24332   2   Internal    125    82        Good
tttccattgaaatagaaaaaactatgctaatattcatatgtaaccacaaaatgtcccata
tagctaaagctatcatgagaaaaatgaacaaagctggagccatcacactacctgatttca
aactattttataaaaatatagtaattagaacacaatggtactggcaaaaaaaaaaattag
ACACATTGACCAGTGGAACACAATGGAGAGCCCAGAAATGAACCCACACCTGAATGGTCA
ATTGATCTTTGATAGAAGCATCAAGAATACACAGTGGGAAAAGCATAGTCTTTTCAATAA
AAGAT
gttgggaaaactggatgtccacatgcagaacaatgaaactggacccttatctcacacaat
atacaaaaatcaacccaatagattaaagacttaaactgtaaaacttctagaagaaaacat
agggggaaaattacacagcattggtctgggcagtgatttttttaaatttgactccaaaag

Exon 11 +      30358      30523   2   Terminal    166    81        Good
tccccaccaattcaatgagacaaagctagtgacttctttctcccagtcttactccccctc
tctgtgatggcatcaccatctgccccagtgtgtaaacctttgtgtcatttttgacagttc
cagtgtgtaaacctttgtgtcatttttgacacttccttctcccctgtccctcacctccag
CCGATCACCACATCCGGACTATTCTGATAACAAAATACATCTCAAGACAATGCTTCTCAC
CGACTACCCTGCCTCTGCTCTGCTCCAAGTCACCACAATGTCAGCTATCAACAGCCACTT
CATCCATTTTGCGTCCTCCAAGCCATTCTATATCCTGTTGCTGTAG
tgagcttttaagagccccatggtatcatatcacgtcttgctgaaatccttccagtggctt
cccattgcactaggatagagtgaattgcttagcgtggcctgcaaggccctgtaggatctg
ccttctgactggctggccttgattccacgagcttcacccaccagccacactgtctttcag

Exon 12 +      34063      34210   0   Internal    148    88        Good
agtgttacacttcttaaaggcggcgtgtccggagtttgttccttctgatgttcggatgtg
ttgagtttcttccttctggtgggtttgtggtctccctggctcaagagtgaagctgcagac
cttcgcagtgagtgttacagctcttaaggcagtgtgtttggagttgttctttcctcccag
TGGGTTCGTGGTCTCCCTGGCTTCAAGAGTGAAGCTGCAGCCCTTTGCCATAAGTGTTAC
AGCAGTGCGGACCCAAAGCGTGAGCAGCAGCAAGATTTATTGCAAAGAGTGAAAGAACAA
AGCTTCCACAGTGTGAATGGTGCCCAGG
gtaggttgccactgctgggtcgggcagcctgcttttattctcttatctggccctacccac
atcctgctgattggtccattttacagagagccaattggtctgttttacagagaggtgatt
ggtccgttttgacagggtgctgattggtgcatttacaatccctgagctagacacaaaagt

Exon 13 +      34985      35332   1   Internal    348    56    Marginal
tcccatgccgtgcgcccgcactcctcagtccttgggtggtcgatgggaccgggtgctgcg
gagcagggggcggttctgatcgtggaggctcggccgcgcaggagcccacggtgggggtgg
gggggtggggaggggaggctcaggcatggcaggctgcaggtcctgagccctgccctgcag
GGAGGCACCTAAGGCCCGGCCAGAAGTCGAGCACAGCAGCTGCTGGCCCAGGTGCTAAGC
CCCTCACTGCCCGGGGCTTGTGGGCCAGGGGGCCGCTAGAGTGCCGGGCCCCCCAAGCCC
ATGCCCACCCGGAACTCGCCGGTTCCCGCCTGCGCCTCTCCCTCCACACCTCCCTGCAAG
CTGAGGGAGCCGGCTCCGGCCTTGGCCTGCCCAGAAAGGGGCTCCCACAGTGCAGCGGCG
GGCTGAAGGGCTCCTCAAGTGCCGCCAAAGTGGGAGCCCAGATAGAGAAGGCGCCGAGAG
CGAGCGAGGACTGCCAGGGCTGCCAGCATGCTGTCACCTCTCACAAAG
gtgattaatgggctgctctgtttcaatgatggtggtgcgtcctccaaaattcatgttgaa
acttcacccccagtgcaactgtattaagaggtgtggccgctgggaggcagagccctcatg
aatgggattagcacccgtataaagagctcaaggttgaggggggtgctctcttgcccttct

Exon 14 +      37951      38072   0   Internal    122    99   Excellent
tgacttacaagctactgacaaatagcttgttaagaggggtaagatgatactgtttacagc
ctccttcaatctaagaatgaaattcttaaaggacaaacaacttactttttattggatcaa
gattagagaaagctgtctttcacaagtcaaatttagtaacttgtttttttgtgttttcag
CAACTCAAGCATCCCAACCTTGTTAACCTCCTGGAAGTCTTCAGGAGGAAACGGAGGCTT
CACCTGGTGTTTGAATATTGTGACCACACAGTTCTCCATGAGTTGGACAGATACCAAAGA
GG
gtgagtgatccatcccttacaagcaaaacaaagacacactgggatttgtgagcgaaaagt
ggcaatgactctttttaagactaggtaaggccgggtgcagtggctcatgccagtaatccc
agcactttgggaggcctagacgggtggatcatctgaggtcaggacttcaagaccagcctg

Exon 15 +      50727      50826   2   Terminal    100    93   Excellent
caggagtccaaagttcagtgagctatgatagcaccactgcctccagcctgggcagcacag
caagaccctgaccctaaaaaaaaaaaattaaaagtggaggctggggaaaagcattccccc
taatgtctcatcttagttgcatttttctaagccttttttctcgacagtgactttttctag
CATCTATGCCTATATGCCGCTCAAACAAGGAAAAGAGAATTTGGAGAGAAGCAACTTCAA
ACACAGGGACATAGACCTGGTCCAGCAATGTCCCAACTAG
ccttcctggaagtggcctcttcctttccttcatgtgatcccactctctgttcaaacaccc
cctgatctgcttgaaaggatttcctgaacgtctggcctgtgacaacagtggccttgtagc
ctctctcagaggctacaagtgactttttgtagtccccttaacacagctactcaagagctt

Exon 16 +      54878      54968   0   Internal     91    95   Excellent
tgattcaggctctgacaggcatggtactagatttattttaggctgctcttttgctgttgt
ccaacaggccaaggagagatttaaatgatttatccaatatttgctaaatagtcatgtgtt
tcatttatcccatatatagttcagccttaatattgtttttgttttgatttgttacactag
TGCATACATAGAGACGTGAAGCCAGAAAATATCCTCATCACGAAACATTCCGTGATTAAG
CTTTGTGACTTTGGATTTGCTCGGCTTTTGA
gtgagtattgacattttcttttgttaagtataaaaaatgaaaaagttcttgatacaacaa
aggatctaaatgctctagaagtatacaagatagtacttgtatatttagggcataagtgtg
ctataaattataattttgtaattaccgaaaatgtgtagataatacaatggtttacctatg

Exon 17 +      55892      56068   1   Internal    177    94   Excellent
atttatttaagtgatttgaatgtgcaactagaattgagaaccagcgatatagaaaggcca
caaaattgggcacaggcttgacttctgagatctccccctcagttttgattccagccttcc
gctgctgtttgttttccatgttccatcactggctagctggaccgagtgactactatacag
ACTACGTGGCTACCAGGTGGTACCGCTCCCCTGAGCTGCTGGTGGGGGACACGCAGTACG
GCCCCCCGGTGGATGTTTGGGCAATTGGCTGTGTCTTTGCTGAGCTGCTGTCAGGAGTGC
CTCTGTGGCCAGGAAAATCGGATGTGGATCAGCTGTATCTGATTAGGAAGACCTTGG
gtaagtggtgtttttgtcccaccttttggaaaactggatatttccccaggttggggcagg
gcagagccaagttctcagtctcacctaatgccctttaaggcattagttaggaaagaggaa
aactcgaagcctcatttaaatgactccattaaaggtggccatatttgttttaattaaaat

Exon 18 +      58087      58153   2   Internal     67    61    Marginal
atacaggttgctgtgggttgcctgaatgcctctccttctgattgcccaagaacactgcag
tgtccatgcatatgggcacagacaaacacagcattgatggaagaaaaccatagatcagtg
tttgctaaccaatttcacttacctttttcttttcttgtccaaaggggatctcattcctag
GCACCAGCAAGTGTTTAGCACGAATCAGTACTTCAGTGGAGTGAAAATTCCAGACCCTGA
AGATATG
gtgagttacccattttggagagagctctgtaggccaggctagctaggctttggttgttat
tcacctcctgagccccatggctcaccctgcattggaggtcagtctaacagagaaaaagaa
aattggagcaaattggctagcgagactttagccttactgctcatttagaggctgctgata

Exon 19 +      64408      64474   2   Terminal     67    59    Marginal
ctacagtggtggagactttgctgtatgctgtattaactgtatttgttatcatgtgtaaat
atcatttttaaaataaaaacactagtttttacaaagtacatgcaagggaccaaactggct
aaatggattaccccatttggccactgaggtaaactctaaaattatatcttactctcccag
GGCAGAGTACCAATTGCTTCAAGAACAGAATAAGGTGGAGAAAATGATTTTTCATTACTA
CTTCTAG
aaactatttatttaatatgtgagtgccatttaggaatgactggaaggaactaaaatcatg
actggtgtgttttcctgccttttcccccttcttattgcaactgaagtttcatctttcaaa
gaagaaaaaaatgacattaataagttaatacaattttgaagaagtaagaagaaggaattt

Exon 20 +      64668      64850   0   Terminal    183    64    Marginal
aatatgtgagtgccatttaggaatgactggaaggaactaaaatcatgactggtgtgtttt
cctgccttttcccccttcttattgcaactgaagtttcatctttcaaagaagaaaaaaatg
acattaataagttaatacaattttgaagaagtaagaagaaggaattttctgttcttttag
GGCTGTCTCCACATGGACCCTACTCAAAGGCTGACATGTGAACAGCTGTTGCATCACCCA
TATTTTGAAAACATCAGAGAAATAGAGGATTTGGCAAAAGAACACAACAAACCAACAAGG
AAGACCCTAAGAAAGAGCCGAAAGCACCACTGCTTTACAGAAACATCCAAGGTTATAATT
TGA
aatgatctcctacctgccacctggtacagagagttggaatctagacttgaggatggcagt
tgtggctttcagctccagcatcctcattccagcactaggagacaggtcataggatctatc
aaccagggccccagggacatctgtctcctgaagccccctctccctgaatcctaaaggtgc

Exon 21 +      66919      67026   0   Terminal    108    88        Good
atttaaaaggaaaagccaagacgaaattgaaacatttaatcctctctcaagtcctggatt
gtgtgcaaaaaaagtacttctatactaaaaagcttaattacctcttttgtgatatattct
aaataatgaaaaaaatgcatggcacagttttgaacctaattctgtgttttgcatttttag
TTGCAGTACCTACCCCAGCTAACTGGCAGCAGCATCCTTCCAGCTTTGGATAATAAGAAG
TACTACTGTGATACCAAGAAACTTAACTACCGTTTTCCAAACATTTAA
aggagctaggagacatgattttaaaaaaggaatcaatagatgctttgaagaaaataaaac
ttatacagttgattgaaaacaattacaatgttgaaaacacaccaggagaaaacataagca
agaaactgggaggccaactggcaagatatgaagggaaattccagatccagtcttccatgc

Exon 22 +      67041      67267   0    Initial    227    77        Good
ataatgaaaaaaatgcatggcacagttttgaacctaattctgtgttttgcatttttagtt
gcagtacctaccccagctaactggcagcagcatccttccagctttggataataagaagta
ctactgtgataccaagaaacttaactaccgttttccaaacatttaaaggagctaggagac
ATGATTTTAAAAAAGGAATCAATAGATGCTTTGAAGAAAATAAAACTTATACAGTTGATT
GAAAACAATTACAATGTTGAAAACACACCAGGAGAAAACATAAGCAAGAAACTGGGAGGC
CAACTGGCAAGATATGAAGGGAAATTCCAGATCCAGTCTTCCATGCTTGATGATGGTGTC
CAGAAAAGAAAAAACCTGTTTGGAGTTGCACTTGTATTTCAGTTTAT
gtaagtagccgaacttatggacagaatatgaactgtcccatacctctggcaaaactagat
gatatcaaaaagatttatgcttcagttgtaccacatgccacacaagaaaaatgaaccaca
aaatgcccatatatatttcctcggatctctgttgcctgagtcctatctcctgcctctcag

Exon 23 +      67664      67712   2   Terminal     49    51    Marginal
ttgaaatcaaaatgtttaaaatcccatttcctgcttgctctatttcttgatttttatatt
ttaaaacattttgagggtaacacttaggttcaaaatatttaaaagcatatgaattatcac
aaaagcttggtaatttataatttaattatatgtttccacatttcatccttactttatcag
TAAAGGATACACCTTAGTCACTTTTGCAGGCAACGTGGATTTACTGTAA
tctgtctacatttattcacccaattccccttgtaaacaatggcatgaagctcggcagctg
attaaggcagtcaaagggtagagcaagacctacaggctttgcaggaactgaacctatcag
cctgaaaataattagtatttcattctctctggcacagcctttgacctggtacatctatag

--------------------------------------------------------------------------------