--------------------------------------------------------------------------------
GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (37064 bp)
--------------------------------------------------------------------------------
PERCEVAL Exon Candidates (4 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1281       1357   0    Initial     77    88        Good
ggtgggtccaacgcggaatgaggcacagcctgggacagcccgggcccggcgcgccgcggc
cgcgcgaggcccccgccgtcgccgacgcccgagcgccggagccccggccccgccccgcga
gcgccgagacttgttggccgcggagactgcgaccctcttctctcagtctgccttactacc
ATGCCGCTCTACGAGGGCCTGGGGAGCGGCGGGGAGAAGACGGCGGTCGTGATCGACCTG
GGAGAGGCCTTTACCAA
gtgagtggccgtgacgccagctgtgttcgacccgaggggagggcgggtggcagagcccca
ggcactgcctgggtcctcatcgccgactcgctgggcagctccgggcctccccttttcttc
aaccagcgcccttgcaaataacagctcttattatttcctccctgggcgatgcgaatccga

Exon  2 +       8999       9081   0   Internal     83    86        Good
acattccgattcttaaggattcctaatttaagagattactctgtatttaatttttatatt
ctcaatacagattgcttttaatttattcccagaaaatgtattagtaaataattacatttt
aatcttaatttgaggttattttattaatataaattaataaatcattttaattttttacag
CCTGTCAGAGTTGTTCAGTATAATATCAATACAGAAGAATTATATTCCTACCTAAAGGAA
TTCATCCACATACTATATTTCAG
gtaagatacattttgttttctagcttttatgattagatagattttcctaatgccatagtg
ataattggttgtgttacagctgaggccaaaaaaaaaaaaaatggacttctattgccattt
ttacatgcttattttcaaccttttcaaaaatatatttgaagactagaaaactggcagaca

Exon  3 +      32162      32216   2   Internal     55    53    Marginal
cccagctaatttttgtattatttagagacagggtttcgccatgttggccaggctggtctt
gaactcctgaccttgtgatccgcccgcctcggcctcccaaagtgctgggattacaagcgt
gagccaccgcacctggccttttttttctctttttttgacagtgttgctcttgttgcccag
GCTGGAGTGCAATGGCATGATCTCAGCTCAGCACAACCTCCGCCCCCGGGTTCAA
gtgagtatcctgcctcagcttcccgagtagctgggattacaggcatgtgccaccatgcct
ggctaattttgtatttttggtagagatggggtttctccatgttggtcaggctggtcttga
actcccgacctcaggtaatccacctgtctcggcctcccaaagggctgtacaggcgtgagc

Exon  4 +      35433      35614   1   Terminal    182    50    Marginal
cctgttattcaaaatgtaaaataaagaatggcttaactggaattactttgaagattgtgg
ctatgcattgctgaattttaccagtccacttttgtcatatagtgaagtagatgtatgtgt
acataaagttttctggtaaaagttttcatcttagctataaaaaatatttttgtcacacag
GGGCTATTTTTGGAGCATTACAAGATATACTTGGGAGCCGTTCTGTTTCAAAGGAATATT
ATAATCAGACGGGCCGTATACCTGATTGGTGTTCTCTCAATAACCCACCTTTGGAAATGA
TGTTTGATGTCGGGAAAACTCAACCACCTCTGATGAAGAGAGCATTTTCCACTGAGAAAT
AG
aagtttgattaaaaatcaaccttgcttcatatcaaatatttaaccaattataagcaaatt
gtacaaagtatgtaggatgttttgttatagaggactatagtggaagtgaaagcattctgt
gtttactctttgcattaatatataattcttttgactttgtttctcttgtgtagtggtaaa

--------------------------------------------------------------------------------