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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (6804 bp)
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PERCEVAL Exon Candidates (8 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1529       1582   0    Initial     54    69    Marginal
gcacgccccgagatgacggccgctgccctaggcagggccggcgggcgattgcgcgtgtcc
tgctcctcttaggcccgggaccgcgggatgggtgtcggcgtgaccaggcctgagctccct
gtctctcctcagtgacatcgtctttaaaccctgcgtggcaatccctgacgcaccgccgtg
ATGCCCAGGGAAGACAGGGCGACCTGGAAGTCCAACTACTTCCTTAAGATCATC
gtaagtgcagggtgggtcgcctctgctcttcatgttgccccagcgcaaatagggacagtc
agctgctatgtgctgagggtctactcacaccggctactgaattaggccatttttgggaaa
atactgtttagttaacaatttcctgagataggtcccttctgttgcagataaacgggctca

Exon  2 +       2827       3037   0   Internal    211   100   Excellent
acccagctagccaatcatccagtttggcagtgttacaacgtagctcccaatctccctctg
acttcaaaagcttagaagaaagggagtgggatggaaacaaattgtggggttcagtttctt
ctggcattttttccctctctcttcctgttaaacttggctcctctggcttgttttttgtag
CAACTATTGGATGATTATCCGAAATGTTTCATTGTGGGAGCAGACAATGTGGGCTCCAAG
CAGATGCAGCAGATCCGCATGTCCCTTCGCGGGAAGGCTGTGGTGCTGATGGGCAAGAAC
ACCATGATGCGCAAGGCCATCCGAGGGCACCTGGAAAACAACCCAGCTCTGGAGAAGTCA
GTTCCCCTGGCAGTTTTGTCCTTTCTCCCCA
gtgcccgtctccctcttcctggagaatggtgctgaaaggtgattgtctcccataaacttc
tctttgcagactgctgcctcatatccgggggaatgtgggctttgtgttcaccaaggagga
cctcactgagatcagggacatgttgctggccaataaggtaaggggacaattgggttggct

Exon  3 +       3039       3075   1   Internal     37    58    Marginal
tgtgggagcagacaatgtgggctccaagcagatgcagcagatccgcatgtcccttcgcgg
gaaggctgtggtgctgatgggcaagaacaccatgatgcgcaaggccatccgagggcacct
ggaaaacaacccagctctggagaagtcagttcccctggcagttttgtcctttctccccag
TGCCCGTCTCCCTCTTCCTGGAGAATGGTGCTGAAAG
gtgattgtctcccataaacttctctttgcagactgctgcctcatatccgggggaatgtgg
gctttgtgttcaccaaggaggacctcactgagatcagggacatgttgctggccaataagg
taaggggacaattgggttggctaaagagactttgttgttgctccttaaagcaaaatggac

Exon  4 +       3107       3194   2   Internal     88   100   Excellent
tggtgctgatgggcaagaacaccatgatgcgcaaggccatccgagggcacctggaaaaca
acccagctctggagaagtcagttcccctggcagttttgtcctttctccccagtgcccgtc
tccctcttcctggagaatggtgctgaaaggtgattgtctcccataaacttctctttgcag
ACTGCTGCCTCATATCCGGGGGAATGTGGGCTTTGTGTTCACCAAGGAGGACCTCACTGA
GATCAGGGACATGTTGCTGGCCAATAAG
gtaaggggacaattgggttggctaaagagactttgttgttgctccttaaagcaaaatgga
ccattctcaggttgtgtgagtggagaggcttttctcactgtttgttgtctttgtcaggtg
ccagctgctgcccgtgctggtgccattgccccatgtgaagtcactgtgccagcccagaac

Exon  5 +       3312       3458   0   Internal    147   100   Excellent
gtgggctttgtgttcaccaaggaggacctcactgagatcagggacatgttgctggccaat
aaggtaaggggacaattgggttggctaaagagactttgttgttgctccttaaagcaaaat
ggaccattctcaggttgtgtgagtggagaggcttttctcactgtttgttgtctttgtcag
GTGCCAGCTGCTGCCCGTGCTGGTGCCATTGCCCCATGTGAAGTCACTGTGCCAGCCCAG
AACACTGGTCTCGGGCCCGAGAAGACCTCCTTTTTCCAGGCTTTAGGTATCACCACTAAA
ATCTCCAGGGGCACCATTGAAATCCTG
gtgagtggacctggtttgcctgtgctaaccaggcaaatggggagctgcttttagtggcca
tggatctgctggttgtccaacaggtgtttactgccccactattatctggttcagagtgat
gtgcagctgatcaagactggagacaaagtgggagccagcgaagccacgctgctgaacatg

Exon  6 +       3678       3800   0   Terminal    123    53    Marginal
gggagctgcttttagtggccatggatctgctggttgtccaacaggtgtttactgccccac
tattatctggttcagagtgatgtgcagctgatcaagactggagacaaagtgggagccagc
gaagccacgctgctgaacatgctcaacatctcccccttctcctttgggctggtcatccag
CAGGTGTTCGACAATGGCAGCATCTACAACCCTGAAGTGCTTGATATCACAGAGGAAACT
CTGCATTCTCGCTTCCTGGAGGTATATGCTGTCAGCCTTGCCCCCTCTTACACTGATGGT
TGA
gagcatgacaaggttcagactgagtccctgtaaccaaggactgtgttttcatctgtctac
ctacctcatctgtaaaatgtcagtaacaacataagattgttgaaggattttttttttttt
tttttggagacagagtcttgctgtgtcgcccaggctggagtgcagtggcacaatctcccg

Exon  7 +       4829       4990   0    Initial    162   100   Excellent
gatttggaataagggcaaaatttatttgatggggctgaattgctctgccaggagcatttg
gtatgagatgaaatggcctctcttgagactgagctgccaacctggcaattattgtctgct
aagggttctctttattcacccttacttggacttcctttcctgtagggaatctcacgtaaa
ATGAAATCTTCCCTCCCCCAGGGTGTCCGCAATGTTGCCAGTGTCTGTCTGCAGATTGGC
TACCCAACTGTTGCATCAGTACCCCATTCTATCATCAACGGGTACAAACGAGTCCTGGCC
TTGTCTGTGGAGACGGATTACACCTTCCCACTTGCTGAAAAG
gtaaaaggatcccaccaggaccacagtgggcctgactgtgacaaattagcagggtgatgt
ggccttctaccttactgcttttatagttgtattttatatagcagataattttgtgagggg
atatttgagaggttgggaggcagggaaggcgtttctcacttgagaaatgacaagagaccc

Exon  8 +       5378       5539   0   Terminal    162    97   Excellent
ggccttaggaaccctgcctcactaggccatacccaagctgtcctgcttgggctgcttctg
acaggaaaggcttcacacggactttgatattgttggtccttaaactctaccaaggcagga
gggtggtgggtaatagaggagtgtggatgaccattttgaccacttcccccctcctttcag
GTCAAGGCCTTCTTGGCTGATCCATCTGCCTTTGTGGCTGCTGCCCCTGTGGCTGCTGCC
ACCACAGCTGCTCCTGCTGCTGCTGCAGCCCCAGCTAAGGTTGAAGCCAAGGAAGAGTCG
GAGGAGTCGGACGAGGATATGGGATTTGGTCTCTTTGACTAA
tcaccaaaaagcaaccaacttagccagttttatttgcaaaacaaggaaataaaggcttac
ttctttaaaaagtctctggactcttaattttgtaattttttttcctttttgacacagggt
ctggctgttgcccaggctggagtgtggtggtgtaatcataactcactgcacccttgaact

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