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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (8073 bp)
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PERCEVAL Exon Candidates (4 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1237       1270   0    Initial     34    66    Marginal
atcccatgctggcaaatcgtcagggtcattcctgcaacagacagattcaaggccagcccc
aaactcagccaagagcaaagcaaacactccagccttatctgggcagggttgtgtggagac
tgactataagactatacctgagactggtcatctcagttcttttctcaccttgactgcaag
ATGAAACTCCTTGTGCTAGCTGTGCTGCTCACAG
gtaggcaagtctccccggctccacccgcctttctctcccaagtgagctaagatctcactc
ctctggaatgggggccacaggccacagcaaacagggatggccagccccgcagtctcaatt
cgaggttcccagtggggcttaagggctcctctattggggttccctcaaggctggcacttt

Exon  2 +       2832       3129   1   Internal    298    98   Excellent
ggcctagctgggtggcacatgcctgtaatcctagctgaggcggtagggtcccagaagaag
aagaagaagaaaaagaagaagatatatatatatatacacacacacaaagatataaacttt
atatatataaagttttcattaaaaaaaaaaaaaaacctctacccactttcactttaccag
GTTCCTGGGTCCAACGGTCTTCAGAGGAGGCAGCTGGCAGGGGTCAGGGAGGCAGCGTGG
GACCCGAGGGAGCAGGAAGGCAGTGTGTCCCCGGGGTGCTGGCAGACCGATTTGAACTCT
GGCTATGTCTTCTTGCAGTGGCCGCCGCCGACAGCGGCATCAGCCCTCGGGCCGTGTGGC
AGTTCCGCAAAATGATCAAGTGCGTGATCCCGGGGAGTGACCCCTTCTTGGAATACAACA
ACTACGGCTGCTACTGTGGCTTGGGGGGCTCAGGCACCCCCGTGGATGAACTGGACAA
gtaagtgatccgcctgcaggaaaattggagtgcctgccgggggcggggtggggcacacgc
caaggatctcacgaggcatacaaaggggacttgcatatctgctaaggataacatattttc
acctcttgtcaaataaacaaatatgttccaagaggaccctgtagcgaacgcaccccgtta

Exon  3 +       3929       4056   2   Internal    128   100   Excellent
aaaaaaaaatgctttcaataaatatatgataaaaggacttatattttttcaagccatagg
atcatttctcctgaagcatcttggcgaagtcatccccacctgttcctgagagtgggcagg
tgagggctgacctattgctctgcacttactcctatctcagctgtccctcccactttccag
GTGCTGCCAGACACATGACAACTGCTATGACCAGGCCAAGAAGCTGGACAGCTGTAAATT
TCTGCTGGACAACCCGTACACCCACACCTATTCATACTCGTGCTCTGGCTCGGCAATCAC
CTGTAGCA
gtaggtttatcccttccttgacctatgaattctagttggttctcagtaggccggggggaa
ataatagtaacaacagccatgatttagtgttaattttcttggttctgggcagtgtctcct
ttaatcctcagaacaacactatgggataggtacaattatcctcacttaacagataagaaa

Exon  4 +       6673       6797   1   Terminal    125    97   Excellent
tgtttatctgaaagtcaaatttaactgggcatcctgatgtacttgtattcacttaatctg
tcagccctaaatgtgcatcagtggaatggctgccagcttattccagttaattcttcttgc
cccagattgtacaaaacagggtccaccttggctcagtcctctcctttcatccctctccag
GCAAAAACAAAGAGTGTGAGGCCTTCATTTGCAACTGCGACCGCAACGCTGCCATCTGCT
TTTCAAAAGCTCCATATAACAAGGCACACAAGAACCTGGACACCAAGAAGTATTGTCAGA
GTTGA
atatcacctctcaaaagcatcacctctatctgcctcatctcacactgtactctccaataa
agcaccttgttgaaagacctcatgtttggatattgttttattctctgtctataaactagg
tctctgcctactcttttatttttatgtatttattttttctaggtggagtcttgctctgtg

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