-------------------------------------------------------------------------------- GrailEXP v3.31 [March, 2002] http://compbio.ornl.gov/grailexp/ Authors: Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and Edward C. Uberbacher, 1996-2001 Reference: "Automated Gene Identification in Large-Scale Genomic Sequences", Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4, Number 3, 1997 Sequence: >GrailEXP Input Sequence (8282 bp) -------------------------------------------------------------------------------- PERCEVAL Exon Candidates (10 predicted) Index Std Begin End Frm Type Len Scr Quality Exon 1 + 1364 1918 0 Initial 555 92 Excellent acttaatcattcacagctcgacagctctctcgcccagcccagttctggaagggataaaaa gggggcatcaccgttcctgggtaacagagccaccttctgcgtcctgctgagctctgttct ctccagcacctcccaacccactagtgcctggttctcttgctccaccaggaacaagccacc ATGTCTCGCCAGTCAAGTGTGTCCTTCCGGAGCGGGGGCAGTCGTAGCTTCAGCACCGCC TCTGCCATCACCCCGTCTGTCTCCCGCACCAGCTTCACCTCCGTGTCCCGGTCCGGGGGT GGCGGTGGTGGTGGCTTCGGCAGGGTCAGCCTTGCGGGTGCTTGTGGAGTGGGTGGCTAT GGCAGCCGGAGCCTCTACAACCTGGGGGGCTCCAAGAGGATATCCATCAGCACTAGTGGT GGCAGCTTCAGGAACCGGTTTGGTGCTGGTGCTGGAGGCGGCTATGGCTTTGGAGGTGGT GCCGGTAGTGGATTTGGTTTCGGCGGTGGAGCTGGTGGTGGCTTTGGGCTCGGTGGCGGA GCTGGCTTTGGAGGTGGCTTCGGTGGCCCTGGCTTTCCTGTCTGCCCTCCTGGAGGTATC CAAGAGGTCACTGTCAACCAGAGTCTCCTGACTCCCCTCAACCTGCAAATCGACCCCAGC ATCCAGAGGGTGAGGACCGAGGAGCGCGAGCAGATCAAGACCCTCAACAATAAGTTTGCC TCCTTCATCGACAAG gtgagctacgatcttttgtaaaaaatcactgtgggtctgaaataaatgccaaagagagag aaagaaggaagatgttttggctttgtgcaaatacttttatagttgtacagttctgtgttt ccgtttgtttctgtgccctggatttgtggacacgttctgaattagactggcagctgggaa Exon 2 + 2500 2714 0 Internal 215 100 Excellent ctccccctggaaaagtgagtttgggtgcctcagtctgcacctcccctcctggggcccagg gccaggcacagtgcacagaaaagctttagagggacggaaagaggtgggaggcaccttagt gagttgatcatagaacatgaaatccaagtttctctatcttcaaaccctgctcccctccag GTGCGGTTCCTGGAGCAGCAGAACAAGGTTCTGGACACCAAGTGGACCCTGCTGCAGGAG CAGGGCACCAAGACTGTGAGGCAGAACCTGGAGCCGTTGTTCGAGCAGTACATCAACAAC CTCAGGAGGCAGCTGGACAGCATCGTGGGGGAACGGGGCCGCCTGGACTCAGAGCTGAGA AACATGCAGGACCTGGTGGAAGACTTCAAGAACAA gtgagttggggtggagggtggacacaggggagggtggtgtcttcttggtaccagatgggc tttgttactagtctactaccatgccttcctttggggctgggaggatataccttccatgga cacctccagtactaaaacaaacaaacaaatacacaagccaggctcatgtttagaaagttc Exon 3 + 2880 2989 0 Initial 110 66 Marginal agacttcaagaacaagtgagttggggtggagggtggacacaggggagggtggtgtcttct tggtaccagatgggctttgttactagtctactaccatgccttcctttggggctgggagga tataccttccatggacacctccagtactaaaacaaacaaacaaatacacaagccaggctc ATGTTTAGAAAGTTCCAGCCCCAGGCTCAGGCCCTCTGCAAGGAACTTAGTCAACAGCCA GAGCAACATGCTCTGTGCCCTTGGCACTACCTGGTGAAATCTGCCCTGAT gtaaggcttgctctctgggactttcctccccggtacatgggcctttggatagatttgtct caaagcaggagctggtgacataacccagcttggtggctcaagtaatttctttagtcttat gaaccagcaactaggatgctagatttaattttgtttcttttctttttttttttaaagcct Exon 4 + 3497 3557 2 Internal 61 100 Excellent agtatttaaatggggagggaccttggccagaggttcatgctaccagtgtcccctccctct ctgcctatgaggagaagccccttcccactgcaaaagtaggcttacagttgactgcataat aaagaccccttacctgttgctcatcctctgacaaacacttcccatccctttcaccaccag GTATGAGGATGAAATCAACAAGCGTACCACTGCTGAGAATGAGTTTGTGATGCTGAAGAA G gtgcgtgtgggtgggagagaaccagcagcctgcagctatgctctctaagcgtggagctca cttgagtagggtgacggtgtgtgcagtgccaatcatccctgtttccccaggatgtagatg ctgcctacatgaacaaggtggagctggaggccaaggttgatgcactgatggatgagatta Exon 5 + 3668 3797 0 Internal 130 100 Excellent caccaccaggtatgaggatgaaatcaacaagcgtaccactgctgagaatgagtttgtgat gctgaagaaggtgcgtgtgggtgggagagaaccagcagcctgcagctatgctctctaagc gtggagctcacttgagtagggtgacggtgtgtgcagtgccaatcatccctgtttccccag GATGTAGATGCTGCCTACATGAACAAGGTGGAGCTGGAGGCCAAGGTTGATGCACTGATG GATGAGATTAACTTCATGAAGATGTTCTTTGATGCGGTAAGAAACTTATCTAAATTTTTC ACATGGGTGG gttttttttcctcaagttgtcatatcacaatgagtgaaagatttgaatggaactgacatt aaataacacaacacagaaccagatgaccgactccaaatctccctgcaggagctgtcccag atgcagacgcatgtctctgacacctcagtggtcctctccatggacaacaaccgcaacctg Exon 6 + 3874 4088 1 Internal 215 100 Excellent ggtggagctggaggccaaggttgatgcactgatggatgagattaacttcatgaagatgtt ctttgatgcggtaagaaacttatctaaatttttcacatgggtgggttttttttcctcaag ttgtcatatcacaatgagtgaaagatttgaatggaactgacattaaataacacaacacag AACCAGATGACCGACTCCAAATCTCCCTGCAGGAGCTGTCCCAGATGCAGACGCATGTCT CTGACACCTCAGTGGTCCTCTCCATGGACAACAACCGCAACCTGGACCTGGATAGCATCA TCGCTGAGGTCAAGGCCCAGTATGAGGAGATTGCCAACCGCAGCCGGACAGAAGCCGAGT CCTGGTATCAGACCAAGGTGGGTGCTCTGATGACT gtctcctgagtgaggggacacacccatgtctaggattctaggccatgacgacactaagaa tggggctcctggaacctgctgaagcccattgggatgctttataggaatggctgtgtagac aatttccatctaaacccaaggacctgagaaataatctcactctgaatctcacaccagtgt Exon 7 + 4428 4553 0 Internal 126 100 Excellent ctctgaatctcacaccagtgtctccaggagagcaaaggcactagactagctcagccttgg aaaagcctgaaccagccccacactatttgccaccacttagtactcactgcctgtgaactt tgggaaagttcttcccattctcatataaacagaatctttcctctttcctggctgcatcag TATGAGGAGCTGCAGCAGACAGCTGGCCGGCATGGCGATGACCTCCGCAACACCAAGCAT GAGATCTCTGAGATGAACCGGATGATCCAGAGGCTGAGAGCCGAGATTGACAATGTCAAG AAACAG gtagggtgagattgaaagagggcaaggaaggggcctgagttctaaaagaaacacctactt tgttttattttgttttacttttgctaaacacacgcagctagatccagtaccagtgtttca gtgtcctgccacccacgatgtactggtttctctctgggattcatgatagtttggtttgtc Exon 8 + 4803 5023 0 Internal 221 100 Excellent ttgttttacttttgctaaacacacgcagctagatccagtaccagtgtttcagtgtcctgc cacccacgatgtactggtttctctctgggattcatgatagtttggtttgtctgacccaga aactcagaaggagacacctcaggtcccaagcaaccccactctcctcctttctatctgtag TGCGCCAATCTGCAGAACGCCATTGCGGATGCCGAGCAGCGTGGGGAGCTGGCCCTCAAG GATGCCAGGAACAAGCTGGCCGAGCTGGAGGAGGCCCTGCAGAAGGCCAAGCAGGACATG GCCCGGCTGCTGCGTGAGTACCAGGAGCTCATGAACACCAAGCTGGCCCTGGACGTGGAG ATCGCCACTTACCGCAAGCTGCTGGAGGGCGAGGAATGCAG gtgagtagacagcatgaactcaagatggccttcagctgataaagcgaagctgctctactg tggggtgtacaacacacatacatgagatcagtgacttgtgcgtgataatgacacatcatc aacactatttcagtctgactcatggccatatagctgacctcaactcacttttctggtctc Exon 9 + 5828 5862 2 Internal 35 74 Good ccctcttcattggaaaatccctctggagagttctcccttcctttaacttaagcagctttt gggtgtacagactcctggcttatggaatgaactcgaatcatgaggatgggagttagccac atagactaatgctgtctttttgggagctgttaacccttaattcaatttttcccctttcag ACTCAGTGGAGAAGGAGTTGGACCAGTCAACATCT gtaagtagctttgaacagacattaacaacgacaataatatgggatatatttagtgccaac tcagaattctgctgtttctagatccaaacttttcccatcccagcatatggttatttataa taatacacttagtaagttgtgggtggtggaggggaaggacagattgggacaggaagcaat Exon 10 + 6420 6718 1 Terminal 299 74 Good cctcttacactcacccacttttttagggaccttaattaaatgacagttcttccgggcctt gtttgctactctgtaaagggggtccagtagagtgctccaacaccagcagatcaaataaat gggccatgcaggatcagcctggcagatggtctcactgagtcctccctcctttccctgcag CTGTTGTCACAAGCAGTGTTTCCTCTGGATATGGCAGTGGCAGTGGCTATGGCGGTGGCC TCGGTGGAGGTCTTGGCGGCGGCCTCGGTGGAGGTCTTGCCGGAGGTAGCAGTGGAAGCT ACTACTCCAGCAGCAGTGGGGGTGTCGGCCTAGGTGGTGGGCTCAGTGTGGGGGGCTCTG GCTTCAGTGCAAGCAGTGGCCGAGGGCTGGGGGTGGGCTTTGGCAGTGGCGGGGGTAGCA GCTCCAGCGTCAAATTTGTCTCCACCACCTCCTCCTCCCGGAAGAGCTTCAAGAGCTAA gaacctgctgcaagtcactgccttccaagtgcagcaacccagcccatggagattgcctct tctaggcagttgctcaagccatgttttatccttttctggagagtagtctagaccaagcca attgcagaaccacattctttggttcccaggagagccccattcccagcccctggtctcccg --------------------------------------------------------------------------------