--------------------------------------------------------------------------------
GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (28797 bp)
--------------------------------------------------------------------------------
PERCEVAL Exon Candidates (12 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1201       1338   0    Initial    138    53    Marginal
gcctcgaaccccaagcacccgactccctccttaccctgtgttggctcacttctctctctt
gtcccctcctttctcaggctgaggccccagcttgtggccaccacaacgtatcaagctatc
tccagggttgggctcaggactcagagctgacgcagctggggtgccccttggttctggagg
ATGAGGCTCCTCCGCAGACGCCACATGCCCCTGCGCCTGGCCATGGTGGGCTGCGCCTTT
GTGCTCTTCCTCTTCCTCCTGCATAGGGATGTGAGCAGCAGAGAGGAGGCCACAGAGAAG
CCGTGGCTGAAGTCCCTG
gtgagccggaaggatcacgtcctggacctcatgctggaggccatgaacaaccttagagat
tcaatgcccaagctccaaatcagggctccagaagcccagcagactctgttctccataaac
cagtcctgcctccctgggttctataccccagctgaactgaagcccttctgggaacggcca

Exon  2 +       1225       1691   0    Initial    467    95   Excellent
ccctccttaccctgtgttggctcacttctctctcttgtcccctcctttctcaggctgagg
ccccagcttgtggccaccacaacgtatcaagctatctccagggttgggctcaggactcag
agctgacgcagctggggtgccccttggttctggaggatgaggctcctccgcagacgccac
ATGCCCCTGCGCCTGGCCATGGTGGGCTGCGCCTTTGTGCTCTTCCTCTTCCTCCTGCAT
AGGGATGTGAGCAGCAGAGAGGAGGCCACAGAGAAGCCGTGGCTGAAGTCCCTGGTGAGC
CGGAAGGATCACGTCCTGGACCTCATGCTGGAGGCCATGAACAACCTTAGAGATTCAATG
CCCAAGCTCCAAATCAGGGCTCCAGAAGCCCAGCAGACTCTGTTCTCCATAAACCAGTCC
TGCCTCCCTGGGTTCTATACCCCAGCTGAACTGAAGCCCTTCTGGGAACGGCCACCACAG
GACCCCAATGCCCCTGGGGCAGATGGAAAAGCATTTCAGAAGAGCAAGTGGACCCCCCTG
GAGACCCAGGAAAAGGAAGAAGGCTATAAGAAGCACTGTTTCAATGCCTTTGCCAGCGAC
CGGATCTCCCTGCAGAGGTCCCTGGGGCCAGACACCCGACCACCTGA
gtaagtagcacccagagtccttgtggggagaccagggctttgctaaaggcatggctagta
tggccagggccatagatcaagggccagagaaagagttgaagggaattttataatatgggc
aaggatctcctctatgcctcacttctttcccagaacaactgtgctgatcccaggggttgt

Exon  3 +       3615       3765   2   Internal    151   100   Excellent
tgggtggcagataccggggaagacaggaacagggaacagctgttcccacctgctatagag
aatgtaggctgtggttcagaggagtggaggatggtctgggggagtctctggatggggccc
tccccacacctggtactcccagggaccaggagaactttgtccgtactttcatacttccag
GTGTGTGGACCAGAAGTTCCGGCGCTGCCCCCCACTGGCCACCACCAGCGTGATCATTGT
GTTCCACAACGAAGCCTGGTCCACACTGCTGCGAACAGTGTACAGCGTCCTACACACCAC
CCCTGCCATCTTGCTCAAGGAGATCATACTG
gtggatgatgccagcacagagggtgaggctggaggggcccagaggagggggccggggtct
cccctgggcactcaaaggaggagggcagttcctttcaagggagcaggcaccacctcatga
gcctgttgcctgacatcacagctcatcttaaaggccaggagcaggaagaagtcaggtagg

Exon  4 +       8108       8213   0   Internal    106    79        Good
taagtcacttcctagatacaatggaggtataggcattgcgtaaatacaaccatttgaaat
gggagaaattagccaaaacagaggggctacaggccccatgcaaatcgaaaatccaacagg
gcattcattaagccttaaagttccaaagtgatttcctttgacttcgtgtctcacatccag
GTCACGCTGATGCAAGAGGTGGGCTCCCGTAGCCTTGGACGTGGGGGTTCTAAACTGTTA
ACTTTTCACCCTAAACTTTGTGACTCTGTGAGCTGCAAGTGCCCAG
gtaggcaactcctctgactagctagacaagtgacataatgccaggctggcataggcagca
tctaacaggcagagtagcctgtgttcagtagggcagagttggcagtagccccagtatccc
ctccagagcacccgcccctagcaggccaccatatacacgttcaccttctctctgtctgtc

Exon  5 +      15403      15576   1   Internal    174   100   Excellent
catcttccctgttaacctccttccccagctccggcttctgtggaatggctcagtacagca
ggtgttgggggtttaaaattcaggcctgctagaggcctgagagcccctagcttggtgccc
acaggggattgggtatacagcaaagtggtggactggccacaatgacactgtcccttccag
AGCACCTAAAGGAGAAGCTGGAGCAGTACGTGAAGCAGCTGCAGGTGGTGAGGGTGGTGC
GGCAGGAGGAGCGGAAGGGGCTGATCACCGCCCGGCTGCTGGGGGCCAGCGTGGCACAGG
CGGAGGTGCTCACGTTCCTGGATGCCCACTGTGAGTACCAGGGCACCGGCCTGG
gtgtaacctggaggctccctccctgctagaatgagccagggccacagcctccccaaggcc
ccttcctgttctctcttccgggagtgaaggaggcttgggacccactccaggtgcctctac
ccctttctcaccccaatcccaaggatgtttcatcaagaagacaaacatccctaaaacaac

Exon  6 +      16564      16861   1   Internal    298    98   Excellent
tgaccatgttactcccctgagacctccattctccctgccaaagctgcctccgcctttggg
ggtagaggggtggtagaagggttttaggaaattctgtgtgctccctgtagctgtggggct
tgctgcctgtaacccaggagtaggtggactgtctcttatcctcctgggcattccctccag
GATGCAGCTTGGGCTCTGCTGTGGGCAGGGCCCTGACTGCTGCCTCCTGGTTGGGGCCTG
CAGGTGAGTGCTTCCACGGCTGGCTGGAGCCCCTCCTGGCTCGAATCGCTGAGGACAAGA
CAGTGGTGGTGAGCCCAGACATCGTCACCATCGACCTTAATACTTTTGAGTTCGCCAAGC
CCGTCCAGAGGGGCAGAGTCCATAGCCGAGGCAACTTTGACTGGAGCCTGACCTTCGGCT
GGGAAACACTTCCTCCACATGAGAAGCAGAGGCGCAAGGATGAAACCTACCCCATCAA
gtaaggaccgcagcctggtgagcccccaacctggccccagtcctacccagttccaggaac
ctgtgccatctcacatcaacatttgttaggtgctctatcaagcacttgacatattgtgat
taatcctcactccctatgaagcaggtacaatactaagaatactaaggctcatagtgataa

Exon  7 +      20111      20261   2   Internal    151   100   Excellent
aattacatatttccttgacctggtcctagaaggggaagaggacatagtaaaagctaaatg
atgagtgagttagtggatgaggggctgcacgtcctgagaaagaggaaaggagggggaggt
gggttaggaggggagtccacaaacagctttccccgccaggctccgctcctcctctcccag
AAGATGCACACACTTCTCCCTCTGTCTCTCCAGATCCCCGACGTTTGCTGGTGGCCTCTT
CTCCATCTCCAAGTCCTACTTTGAGCACATCGGTACCTATGATAATCAGATGGAGATCTG
GGGAGGGGAGAACGTGGAAATGTCCTTCCGG
gtgagagtgaagagggctttggggggaaccacaacatcccaggcgacagcttgagaaaca
tctctcaggcagaggtggcatcagggacatcccatctggaactgaactagaaagggtggc
tatttcccagtgtgtctcttcctcttttctgctccccctgtccatggcagtagggcttgg

Exon  8 +      21650      21850   0   Internal    201    82        Good
cgtgtagtcatggcctaggaagaagcctggtcggtatcctttttcccagggagagagagc
agcatttgcccaagtccttggacctggggtctggtgctctgggaatagaatagagctgct
tatggggagactgtctcacctagcccactgaaggcctcatcctgtctcctcttacatcag
GTGTGGCAGTGTGGGGGCCAGCTGGAGATCATCCCCTGCTCTGTCGTAGGCCATGTGTTC
CGGACCAAGAGCCCCCACACCTTCCCCAAGGGCACTAGTGTCATTGCTCGCAATCAAGTG
CGCCTGGCAGAGGTCTGGATGGACAGCTACAAGAAGATTTTCTATAGGAGAAATCTGCAG
GCAGCAAAGATGGCCCAAGAG
gtgagaggaaatggttctcggagaggtttagatgaagagaagtacggcccccagaccctg
ttcatgggcctaatggctgggacccacctcatctctaccatctggcgcctcccttcaccc
tcagggacctgtgagctagagcccaggagaaggccacaaggcacataggtttcaaaagct

Exon  9 +      22721      22852   0   Internal    132    83        Good
gtagtcccagctactcaggaggctgaggcaggtgaatcgcttgaacccaggaggggaagg
ttgcagtgagccgagattgcaccactgcactccagcctgggcaacagagtgagactccct
cttaaaaaaaaaaaaaaaaactggtggaactgatccttagggggctggcttgattgacag
AAATCCTTCGGTGACATTTCGGAACGACTGCAGCTGAGGGAACAACTGCACTGTCACAAC
TTTTCCTGGTACCTGCACAATGTCTACCCAGAGATGTTTGTTCCTGACCTGACGCCCACC
TTCTATGGTGCC
gtaagtcttgagaaccaacctgcctgcccatcaccacagcaccccttggagaagttcaag
accactgaccccacagatggatgacaaacaagaattgagttttgccctgcaccctccttt
atccaggaggaggactgagaggccacgttggggcttctagagatagcaaaaaaccttata

Exon 10 +      23532      23633   0   Internal    102    93   Excellent
actttgctgttagctccaggcatgtgggttaacgcacagaggagagaaatgacgggggaa
atccagccatgcaaatttgttgcagttgactggaatttgttccagtggggccccatacca
cacatgaggaacctcctgactgtgccatcctgcttcccctctctgctcacccttctgcag
ATCAAGAACCTCGGCACCAACCAATGCCTGGATGTGGGTGAGAACAACCGCGGGGGGAAG
CCCCTCATCATGTACTCCTGCCACGGCCTTGGCGGCAACCAG
gtatgcagcccacccatctccggagcatctcctctcctcaccggctccttttctctaccc
taaagagtcctttcctgaggactgggagggaggagataccatccctgccctcaggaagct
tccagtcggaggagaaggcataacacacacaaggtctgaataagggacatccggagagaa

Exon 11 +      25024      25176   0   Internal    153   100   Excellent
tccagcataaccctgatatggtaacaatcctgaaggcagcacataaatgagtaaagtctt
ggcatggcctcacattcactctcctccccaggagaccatgcatggtagacagctcagggc
aggtggctttggaaggctgggggtgaactctccacctgcttctcttgtcttgatttccag
TACTTTGAGTACACAACTCAGAGGGACCTTCGCCACAACATCGCAAAGCAGCTGTGTCTA
CATGTCAGCAAGGGTGCTCTGGGCCTTGGGAGCTGTCACTTCACTGGCAAGAATAGCCAG
GTCCCCAAGGACGAGGAATGGGAATTGGCCCAG
gtgagtcagtgtccagaaagctcagaatcaagaacttgaggccaggtgtggtggctcacg
cctgtaatcccagcactttgagaggccgaggagggcagatcacgaggtcaggagttcgag
accacctggccaacatggtgaaaccccatctctactaataatacaaaaattagctgggca

Exon 12 +      26041      26066   0    Initial     26    44    Marginal
tagtcactgtttctacagatgagctggagccggaggaagcccagcatgtctgtgactggc
ccaagacccatcactagtaaatggcaggcctgggatttagccccagatgggtctgacttg
aaagcacgggctctttccattacaccacactgctccaggatatgccatgtaaccgccacc
ATGCTGAGCTCAAGCCAGCACCCCAA
gtgagcctccctactccaccccagcttaggaaagaggaacctaacctggaggctgcaggg
aagggagcagtctaaacataatccaaggcagaaaattggaggtggagcagtggccctggg
tctttgagcctggccatctgggggtgcgggaggccctgaaagcatttttctctcagccca

--------------------------------------------------------------------------------